BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478808
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14000.1 | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease resist... 1978 0.0
AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3... 433 3e-120
> AT3G14000.1 | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease resistance/zinc
finger/chromosome condensation-like region) domain
containing protein | chr3:4630869-4633411 REVERSE LENGTH=1484
Length=1484
Score = 1978 bits (1071), Expect = 0.0
Identities = 1316/1424 (92%), Gaps = 58/1424 (4%)
Strand=Plus/Plus
Query 321 AGGTCG-AATTGAAACTCTTTAGTGAGTGAGAGAGATGCTGACATGCATAGCTTGT---- 375
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 24 AGGTCGAAATTGAAACTCTTTAGTGAGTGATAGAGATGCTGACATGCATAGCTTGTACGA 83
Query 376 -TC-G---AACACCAACAATGGTGGATCTAAGAAACAAG-A-A-GATGATGAAGAAGACG 427
| | ||||||||||||||||||||||||||||||| | | ||||| |||||||| |
Sbjct 84 AGCAGCTAAACACCAACAATGGTGGATCTAAGAAACAAGAAGAGGATGAAGAAGAAGAAG 143
Query 428 ACAGAGTTATCGGAACTCCTAGGTCTAAGCAGGCGATTAAGTCCCTGACGTCACAGATTA 487
|||||||||| | ||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 144 ACAGAGTTATTGAAACACCCAGGTCTAAGCA---GATTAAGTCCCTGACGTCACAGATTA 200
Query 488 AAGACATGGCAGTGAAAGCATCAGGTGCTTACAAAAGCTGCAAACCGTGTTCTGGGTCGT 547
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AAGACATGGCAGTAAAAGCATCAGGTGCTTACAAAAGCTGCAAACCGTGTTCTGGGTCGT 260
Query 548 CAAACCAGAATAAGAACCGAAACTACGCTGATTCGGATGCTGCTTCGAATTCTGGGAGGT 607
| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 261 CTAATCAGAATAAGAACCGAAGCTACGCTGATTCGGATGTTGCTTCGAATTCTGGGAGGT 320
Query 608 TTCGTTATGCGTACAAGAGAGCGGGGAGTGGTAGCTCAACACCGAAAATTTTGGGGAAGG 667
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 321 TTCGTTATGCGTACAAGAGAGCGGGGAGTGGAAGCTCAACACCGAAGATTTTGGGGAAGG 380
Query 668 AAATGGAGTCAAGGTTGAAAGGTTTTTTGAGTGGAGAAGGAACACCTGAATCCATGAGTG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AAATGGAGTCAAGGTTGAAAGGTTTTTTGAGTGGAGAAGGAACACCTGAATCCATGAGTG 440
Query 728 GTAGGACAGAGTCCACAGTATTCATGGAAGAAGAAGATGAGCTCAAGGAATGGGTTGCTC 787
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 441 GTAGGACAGAGTCTACAGTGTTCATGGAGGAAGAAGATGAGCTCAAGGAATGGGTTGCTC 500
Query 788 AAGTGGAGCCTGGTGTCCTCATCACATTTGTATCATTGCCTGAGGGAGGGAATGATATGA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AAGTGGAGCCTGGTGTCCTCATCACATTTGTATCATTGCCTGAGGGAGGGAATGATATGA 560
Query 848 AGCGGATTCGTTTCAGCCGTGAAATGTTCGATAAATGGCAAGCTCAAAAGTGGTGGGCGG 907
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGCGGATTCGGTTCAGCCGTGAAATGTTCGATAAATGGCAAGCTCAAAAGTGGTGGGCGG 620
Query 908 AGAATTTCGACAAGGTCATGGAATTATACAATGTACAGCAGTTCAATCAGCAGAGCGTCC 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AGAATTTCGACAAGGTCATGGAATTATACAATGTACAGCAGTTCAATCAGCAGAGCGTCC 680
Query 968 CACTTCCAACTCCTCCTAGATCTGAAGATGGGAGCTCACGAATTCAGTCTACCAAGAACG 1027
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 681 CACTTCCAACTCCTCCTAGATCTGAAGATGGGAGCTCGCGAATTCAGTCTACCAAGAATG 740
Query 1028 GTCCTGCAACTCCACCTCTGAACAAAGAAGGCCCTCGAGGAAAAGGCTACGCTTCTTCTG 1087
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 741 GTCCTGCAACTCCACCTCTGAACAAAGAATGCTCTCGAGGAAAAGGCTACGCTTCTTCTG 800
Query 1088 GCTCAATCGCTCACCAAGCAACAACCCAAACACAAAGTCGACACCAAGATTCATCTGGTC 1147
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 801 GCTCACTCGCTCACCAACCAACAACCCAAACACAAAGTCGACACCATGATTCATCTGGTC 860
Query 1148 TTGCTACAACGCCAAAACTCTCAAGCATAAGTGGAACCAAAACCGAGACATCATCTGTTG 1207
|||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 861 TTGCTACAACACCAAAACTCTCTAGCATAAGTGGGACAAAAACCGAGACATCATCTGTTG 920
Query 1208 ATGAGTCTGCAAGAAGTAGCTTCTCAAGGGAAGAAGAAGAAGAAGCAGATCATTCAGGGG 1267
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 921 ATGAGTCTGCAAGAAGTAGCTTCTCAAGGGAAGAAGAAGAAG---CAGATCATTCAGGGG 977
Query 1268 AG---CTCTCTGTAAGTAATGCAAGTGACATTGAAACAGAATGGGTGGAACAGGACGAAG 1324
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AGGAGCTATCTGTAAGTAATGCAAGTGACATTGAAACAGAATGGGTGGAACAGGACGAAG 1037
Query 1325 CCGGTGTTTACATCACAATCAGAGCTTTACCAGATGGGACTCGCGAGCTTAGGCGCGTTC 1384
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1038 CAGGTGTTTACATCACAATCAGAGCTTTACCAGATGGGACTCGCGAGCTTAGGCGTGTTC 1097
Query 1385 GCTTCAGCCGAGAGAAGTTTGGGG---C-AA-G-A---TTGTGGTGGGAGCAGAACAGAG 1435
|||||||||||||||||||||||| | || | | ||||||||||||||||||||||
Sbjct 1098 GCTTCAGCCGAGAGAAGTTTGGGGAAACGAATGCAAGATTGTGGTGGGAGCAGAACAGAG 1157
Query 1436 CTCGGATACAACAACAATACTTGTGATGACCGATGATGGTTGAATGCTCTCTAGAG--GA 1493
|||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||
Sbjct 1158 CTCGGATACAACAACAATACTTGTGATGACCGATGACGGTCGAAGGCTCTCTAGAGAAGA 1217
Query 1494 ATCTGACACAC-C-AAAACAAAACACCttttttttttttttttatattttttACTTGGAG 1551
||||||||||| | |||||||||||| |||| |||| |||| |||||||||||
Sbjct 1218 ATCTGACACACACCAAAACAAAACAC-TTTTCTTTT-------ATATGTTTTACTTGGAA 1269
Query 1552 AAAAGCTACAGAGTGATGGAAATAACTTCGGCTTCAGATAATGCATGCATGTGCTTTTG- 1610
|||||||||||||||||||||||||||| || ||||||||||| | ||||||||||
Sbjct 1270 AAAAGCTACAGAGTGATGGAAATAACTTGGGATTCAGATAATG-A---ATGTGCTTTTTA 1325
Query 1611 GTTGGTGGTTGTTAGTTGATCTCTTTTCTCTTCTTTCCCATTTACATCTAT--A-AA-GA 1666
|||||||||||||||| |||||||| |||||||||| ||| ||||||||| | || ||
Sbjct 1326 GTTGGTGGTTGTTAGTACATCTCTTT-CTCTTCTTTCTCATCTACATCTATCTATAAAGA 1384
Query 1667 GGTATTAGTTTTACTCTTTCAGTGGATTTTCTTGGTGTTATTTT 1710
|| | || ||| | ||| | ||||||||||||||||||||||
Sbjct 1385 GG-AG--GTATTAGT-TTT-ACTGGATTTTCTTGGTGTTATTTT 1423
> AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like
3 | chr1:20227291-20230237 FORWARD LENGTH=1892
Length=1892
Score = 433 bits (234), Expect = 3e-120
Identities = 407/489 (83%), Gaps = 17/489 (3%)
Strand=Plus/Plus
Query 379 AACACCAACAATGGTGGATCTAAGAAACAAGAAGATGATGAAGAAGACGACAGAGTTATC 438
|||||||||||||| |||||| | | |||||| ||||||| | || || |||||||
Sbjct 304 AACACCAACAATGGCGGATCT---ACTCGAGAAGAAGATGAAG-A-AC-ACGGAGTTATT 357
Query 439 GGAACTCCTAGGTCTAAGCAGGCGATTAAGTCCCTGACGTCACAGATTAAAGACATGGCA 498
|| || |||||| ||||||| |||||||| || |||||||||||| | ||||||||||||
Sbjct 358 GGTACCCCTAGGACTAAGCAAGCGATTAAATCACTGACGTCACAGCTAAAAGACATGGCA 417
Query 499 GTGAAA-GCATCAGGTGCTTACAAAAGCTGCAAACCGTGTTCTGGGTCGTCAAACCAGAA 557
|| ||| || ||||| || ||||||| ||||||||||||||||||| | |||||| |||
Sbjct 418 GT-AAAGGCTTCAGGGGCATACAAAAACTGCAAACCGTGTTCTGGGACAACAAACCGGAA 476
Query 558 TAAGAACCGAAACTACGCTGATTCGGATGCTGCTTCGA-ATTCTGGGAGGTTTCGTTATG 616
| |||| |||||||| |||||||||||||||||||| | ||||||| || || | ||||
Sbjct 477 TCAGAATCGAAACTATGCTGATTCGGATGCTGCTTC-AGATTCTGGAAGATTCCATTATT 535
Query 617 CGTACAAGAGAGCGGGGAGTGGTAGCTCAACACCGAAAATTTTGGGGAAGGAAATGGAGT 676
| ||| ||||||| |||| || | |||||| || || |||| |||||| ||||||||||
Sbjct 536 CATACCAGAGAGCTGGGACTGCAACCTCAACTCCTAAGATTTGGGGGAATGAAATGGAGT 595
Query 677 CAAGGTTGAAA-GGTTTTTTGAGTGGAGAAGGAACACCTGA-ATCCATGAGTGGTAGGAC 734
||||||| ||| || ||| | |||| |||||| |||||| | || ||||||||| | ||
Sbjct 596 CAAGGTTAAAAGGGATTTCT-AGTGAAGAAGGTACACCT-ACGTCTATGAGTGGTCGAAC 653
Query 735 AGAGTCCACAGTATTCATGGAAGAAGAAGATGAGCTCAAGGAATGGGTTGCTCAAGTGGA 794
||| |||| ||| ||||||| || || |||||| |||||||||||||||||||||||||
Sbjct 654 AGAATCCATAGTGTTCATGG-AG--GATGATGAGGTCAAGGAATGGGTTGCTCAAGTGGA 710
Query 795 GCCTGGTGTCCTCATCACATTTGTATCATTGCCTGAGGGAGGGAATGATATGAAGCGGAT 854
||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||| | ||
Sbjct 711 GCCTGGTGTTCTCATCACATTTGTGTCATTGCCTCAGGGAGGGAATGATCTTAAGAGAAT 770
Query 855 TCGTTTCAG 863
||| |||||
Sbjct 771 TCGGTTCAG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5