BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478813

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14030.1 | Symbols:  | F-box associated ubiquitination effec...   294    6e-79
  AT3G13624.1 | Symbols:  | pseudogene, hypothetical protein | ch...   187    1e-46
  AT3G49510.1 | Symbols:  | F-box family protein | chr3:18353842-...  63.9    2e-09


> AT3G14030.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756

 Score =  294 bits (159),  Expect = 6e-79
 Identities = 197/215 (92%), Gaps = 3/215 (1%)
 Strand=Plus/Plus

Query  418  TTGAAACTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTA  477
            ||||| ||||||| ||||||| |||| || ||||||||||||||| ||||||||||||||
Sbjct  533  TTGAAGCTGGGAG-TTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTA  591

Query  478  GACGGATATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATAT  537
            ||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct  592  GACGGACGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGAT  651

Query  538  GGATACTTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACAGATTT  597
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct  652  GGATACTTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGACATATTT  711

Query  598  GGATTTACTCTCT-CCATTTATTGTGTCCCACTTG  631
            ||||  |||| || |||||||||||||||||||||
Sbjct  712  GGATACACTC-CTTCCATTTATTGTGTCCCACTTG  745


 Score =  263 bits (142),  Expect = 2e-69
 Identities = 211/242 (87%), Gaps = 14/242 (6%)
 Strand=Plus/Plus

Query  199  ACAACACATCTTCCCGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCG  258
            |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  ACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCG  318

Query  259  CGTCTTCCTCTACCG--T---T-TC------ACTCTCATGATGAAGAGATTGTGTCTCTA  306
            ||||||||||| |||  |   | ||      |||||||||||||||||||||||||||||
Sbjct  319  CGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTA  378

Query  307  T-CTTGTGTCAAAGAAGAGCAGCTAGCTGTGTTATATCAAAACTATGCTATATGCTTGGA  365
            | || |||||||||| |||||||| ||||||||| ||||||||| ||||| |||||||||
Sbjct  379  TTCT-GTGTCAAAGAGGAGCAGCTCGCTGTGTTACATCAAAACTTTGCTAGATGCTTGGA  437

Query  366  CATTTGGATTACGACGATGATCGAGCCTACTGCGCTGTCTTGGAGCAAGTTTTTGAAACT  425
             ||||||||||| || | ||||||||||| |||| |||||||||||| |||||||||| |
Sbjct  438  GATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGT  497

Query  426  GG  427
            ||
Sbjct  498  GG  499


> AT3G13624.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:4454219-4456010 REVERSE LENGTH=1792
Length=1792

 Score =  187 bits (101),  Expect = 1e-46
 Identities = 196/240 (82%), Gaps = 13/240 (5%)
 Strand=Plus/Plus

Query  424   CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA  483
             ||||||| |||||| ||| | || |||||  |||| || |||||||||||||| |||| |
Sbjct  1515  CTGGGAG-TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGAA  1573

Query  484   TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC  543
             ||||||  ||  ||||| |||||| ||||||||||| |||| || |||||| ||| ||||
Sbjct  1574  TATAAAGGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATAC  1633

Query  544   TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAA-ACCTGACAGATTTGGATT  602
             |||||||||||||||||  | || |||||||||||| |||| |||||  |||     || 
Sbjct  1634  TTCAAATCTGTGAATATTGGGGAGGCTCCGAATCTC-GGAAGACCTG--AGA----AATA  1686

Query  603   TACTCTCTC-CATTTATTGT-GTCCCACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG  660
             | ||| | | ||| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct  1687  TGCTC-CACACATATATTGTCG-CCCACTTGTGTGCTCTTCTTATGTTCCAAGCTTAGTG  1744


> AT3G49510.1 | Symbols:  | F-box family protein | chr3:18353842-18356508 
FORWARD LENGTH=2038
Length=2038

 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  627   ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG  660
             ||||||||||||||||||||||||||||||||||
Sbjct  1990  ACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG  2023



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5