BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478816 Length=1110 Score E Sequences producing significant alignments: (Bits) Value AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1640 0.0 > AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15405068-15406573 REVERSE LENGTH=1506 Length=1506 Score = 1640 bits (888), Expect = 0.0 Identities = 1036/1108 (94%), Gaps = 8/1108 (1%) Strand=Plus/Plus Query 1 TCAAGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTCAAGCTATGTTCCTCATTT 60 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 19 TCATGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTCAAGCTATGTTCCTCAATT 78 Query 61 AAACATCTTCTACAGATCCATGGTAAAATCCATGTCTCCTCACTCCAAAATGACAGCTTT 120 ||||| |||||||||||||||||| |||||||| ||||||| |||||||||||||||||| Sbjct 79 AAACACCTTCTACAGATCCATGGTCAAATCCATCTCTCCTCTCTCCAAAATGACAGCTTT 138 Query 121 ATCATCATCGAGCTTGTACGGGTTTCATCACTATCCCTCGTCAAAGACCTTACCTTTGCG 180 ||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 139 ATCATCAGCGAGCTTGTACGGGTTTCATCACTATCCCTCGCCAAAGACCTTGCCTTTGCG 198 Query 181 CGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACTTGGAATATGCTCAATAGA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 199 CGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACTTGGAATATGCTCAGTAGA 258 Query 241 GGCTATTCTTCGAGTGATACTCCAGTAGAATCGATTTGGTTTTATTCTGAGATGGAGAGA 300 ||||||||||| |||||| |||| || |||||||||||| |||| ||||||||| ||||| Sbjct 259 GGCTATTCTTCAAGTGATTCTCCTGTGGAATCGATTTGGGTTTACTCTGAGATGAAGAGA 318 Query 301 CGAGGAATCAATCCTAATAAGCTTACTTTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTT 360 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 319 CGAGGAATCAAACCTAATAAGCTCACTTTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTT 378 Query 361 TTAGGTCTCACTGC-GGGTAGACAGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTC 419 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 379 TTAGGTCTCACTGCTGGG-AGACAGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTT 437 Query 420 TGATGTGTATGTTGGGAATAATTTGATTCATCTATATGGTTCTTGTAAGAAAACTTATGA 479 |||||| ||||||||||| |||||||| ||||| |||||| ||||||||||||||| ||| Sbjct 438 TGATGTATATGTTGGGAACAATTTGATCCATCTTTATGGTACTTGTAAGAAAACTTCTGA 497 Query 480 TGCCAGGAAGATGTTCGACGAAATGACTGACAGAAATTTTGTTTCTTGGAACTCGATTAT 539 |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 498 TGCCAGGAAGGTGTTCGACGAAATGACTGAGAGAAATGTTGTTTCTTGGAACTCGATTAT 557 Query 540 GACTGCTCTTGTTGAGAATGGTAAGTTCAATTTGGTGTTTGAGTGTTTTTGTGAGATTAT 599 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 558 GACTGCTCTTGTTGAGAATGGTAAGTTAAATTTGGTGTTTGAGTGTTTTTGTGAGATGAT 617 Query 600 TGGTAGGAGGTTTTGTCCGGATGAGACGACAATGGTTGTTTTGCTCTCTGCGTGTTGTGG 659 ||||| | |||||||||| ||||||||||||||||| |||||||| || || ||| | || Sbjct 618 TGGTAAGCGGTTTTGTCCAGATGAGACGACAATGGTGGTTTTGCTTTCGGCTTGTGGCGG 677 Query 660 TAACTTGAGCTTGGGGAAATTCCATTCCCAAAGTAGGAGAGTGGTGGTAAGAGAGTTAGA 719 ||||||||||||||||||||| | | | | || ||| |||||||||||||||| Sbjct 678 TAACTTGAGCTTGGGGAAATTGG-TGC--ATTC-AC-AG-GTGATGGTAAGAGAGTTAGA 731 Query 720 GTTAAACTGTAGACTAGGTACTGCACTTGTAGACATGTATGCAAAATCTGGTGGATTAGA 779 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 732 GTTAAACTGTAGACTAGGTACTGCACTTGTAGACATGTATGCAAAATCAGGTGGATTAGA 791 Query 780 GTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAATGCCAT 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 792 GTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAGTGCCAT 851 Query 840 GATTGTAGGTTTAGCACAATATGGATTTGTAGAAGAAGCCCTTCAACTATTCGCGAAGAT 899 ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 852 GATTGTAGGATTAGCACAATATGGATTTGCAGAAGAAGCCCTTCAACTATTCTCGAAGAT 911 Query 900 GATGAAAGAATCAACGGTGAGACCAAAATACGTGACATTTCTCGGTGTTTTATGCGCTTG 959 ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 912 GATGAAAGAATCATCGGTGAGACCAAACTACGTAACATTTCTCGGTGTTTTATGCGCTTG 971 Query 960 TAGCCACACGGCATTGGTGGATGACGGGTACAAATACTTCCACGAGATGGAGAAAGCACA 1019 ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| ||| Sbjct 972 TAGCCACACGGGATTGGTGGATGACGGGTACAAATATTTCCACGAAATGGAGAAAATACA 1031 Query 1020 CAAGATCAAACCAATGATTATTCACTACAGAGCAATGGTAGATATCTTGGGACGTGCATG 1079 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 1032 CAAGATCAAACCAATGATGATTCACTACGGAGCAATGGTAGATATCTTGGGACGTGCAGG 1091 Query 1080 TCGACTAAACGAGGCGTATGACTTCATA 1107 |||||||||||||||||||||||||||| Sbjct 1092 TCGACTAAACGAGGCGTATGACTTCATA 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54417390780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5