BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478816
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1640 0.0
> AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:15405068-15406573 REVERSE LENGTH=1506
Length=1506
Score = 1640 bits (888), Expect = 0.0
Identities = 1036/1108 (94%), Gaps = 8/1108 (1%)
Strand=Plus/Plus
Query 1 TCAAGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTCAAGCTATGTTCCTCATTT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 19 TCATGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTCAAGCTATGTTCCTCAATT 78
Query 61 AAACATCTTCTACAGATCCATGGTAAAATCCATGTCTCCTCACTCCAAAATGACAGCTTT 120
||||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 79 AAACACCTTCTACAGATCCATGGTCAAATCCATCTCTCCTCTCTCCAAAATGACAGCTTT 138
Query 121 ATCATCATCGAGCTTGTACGGGTTTCATCACTATCCCTCGTCAAAGACCTTACCTTTGCG 180
||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 139 ATCATCAGCGAGCTTGTACGGGTTTCATCACTATCCCTCGCCAAAGACCTTGCCTTTGCG 198
Query 181 CGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACTTGGAATATGCTCAATAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 199 CGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACTTGGAATATGCTCAGTAGA 258
Query 241 GGCTATTCTTCGAGTGATACTCCAGTAGAATCGATTTGGTTTTATTCTGAGATGGAGAGA 300
||||||||||| |||||| |||| || |||||||||||| |||| ||||||||| |||||
Sbjct 259 GGCTATTCTTCAAGTGATTCTCCTGTGGAATCGATTTGGGTTTACTCTGAGATGAAGAGA 318
Query 301 CGAGGAATCAATCCTAATAAGCTTACTTTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTT 360
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 319 CGAGGAATCAAACCTAATAAGCTCACTTTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTT 378
Query 361 TTAGGTCTCACTGC-GGGTAGACAGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTC 419
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTAGGTCTCACTGCTGGG-AGACAGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTT 437
Query 420 TGATGTGTATGTTGGGAATAATTTGATTCATCTATATGGTTCTTGTAAGAAAACTTATGA 479
|||||| ||||||||||| |||||||| ||||| |||||| ||||||||||||||| |||
Sbjct 438 TGATGTATATGTTGGGAACAATTTGATCCATCTTTATGGTACTTGTAAGAAAACTTCTGA 497
Query 480 TGCCAGGAAGATGTTCGACGAAATGACTGACAGAAATTTTGTTTCTTGGAACTCGATTAT 539
|||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 498 TGCCAGGAAGGTGTTCGACGAAATGACTGAGAGAAATGTTGTTTCTTGGAACTCGATTAT 557
Query 540 GACTGCTCTTGTTGAGAATGGTAAGTTCAATTTGGTGTTTGAGTGTTTTTGTGAGATTAT 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 558 GACTGCTCTTGTTGAGAATGGTAAGTTAAATTTGGTGTTTGAGTGTTTTTGTGAGATGAT 617
Query 600 TGGTAGGAGGTTTTGTCCGGATGAGACGACAATGGTTGTTTTGCTCTCTGCGTGTTGTGG 659
||||| | |||||||||| ||||||||||||||||| |||||||| || || ||| | ||
Sbjct 618 TGGTAAGCGGTTTTGTCCAGATGAGACGACAATGGTGGTTTTGCTTTCGGCTTGTGGCGG 677
Query 660 TAACTTGAGCTTGGGGAAATTCCATTCCCAAAGTAGGAGAGTGGTGGTAAGAGAGTTAGA 719
||||||||||||||||||||| | | | | || ||| ||||||||||||||||
Sbjct 678 TAACTTGAGCTTGGGGAAATTGG-TGC--ATTC-AC-AG-GTGATGGTAAGAGAGTTAGA 731
Query 720 GTTAAACTGTAGACTAGGTACTGCACTTGTAGACATGTATGCAAAATCTGGTGGATTAGA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 732 GTTAAACTGTAGACTAGGTACTGCACTTGTAGACATGTATGCAAAATCAGGTGGATTAGA 791
Query 780 GTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAATGCCAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 792 GTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAGTGCCAT 851
Query 840 GATTGTAGGTTTAGCACAATATGGATTTGTAGAAGAAGCCCTTCAACTATTCGCGAAGAT 899
||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 852 GATTGTAGGATTAGCACAATATGGATTTGCAGAAGAAGCCCTTCAACTATTCTCGAAGAT 911
Query 900 GATGAAAGAATCAACGGTGAGACCAAAATACGTGACATTTCTCGGTGTTTTATGCGCTTG 959
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 912 GATGAAAGAATCATCGGTGAGACCAAACTACGTAACATTTCTCGGTGTTTTATGCGCTTG 971
Query 960 TAGCCACACGGCATTGGTGGATGACGGGTACAAATACTTCCACGAGATGGAGAAAGCACA 1019
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 972 TAGCCACACGGGATTGGTGGATGACGGGTACAAATATTTCCACGAAATGGAGAAAATACA 1031
Query 1020 CAAGATCAAACCAATGATTATTCACTACAGAGCAATGGTAGATATCTTGGGACGTGCATG 1079
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1032 CAAGATCAAACCAATGATGATTCACTACGGAGCAATGGTAGATATCTTGGGACGTGCAGG 1091
Query 1080 TCGACTAAACGAGGCGTATGACTTCATA 1107
||||||||||||||||||||||||||||
Sbjct 1092 TCGACTAAACGAGGCGTATGACTTCATA 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5