BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478821
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14080.1 | Symbols: | Small nuclear ribonucleoprotein famil... 1098 0.0
> AT3G14080.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr3:4667365-4669194 FORWARD LENGTH=834
Length=834
Score = 1098 bits (594), Expect = 0.0
Identities = 718/775 (93%), Gaps = 19/775 (2%)
Strand=Plus/Plus
Query 1 TTCGATCGGATCTGGGTTCTATAttttttttGAAGAACCCGAGTCCGTTTTCGATCAGTC 60
|||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||
Sbjct 71 TTCGATCGGATCTGGGTTTTATA-TTTTTTTGAAGAACCCGTGTCCGTCTTCGATCAGT- 128
Query 61 TCGCGTTCGATAGCCAAATATTATCTCTTCAACTGAAATCTGAGGAACATTATTATTATC 120
|||||||| |||||||||| ||||||||||| ||| ||||||| |||||||||||| |||
Sbjct 129 TCGCGTTCAATAGCCAAATCTTATCTCTTCAGCTGGAATCTGACGAACATTATTATCATC 188
Query 121 GGTTTGTGTTTTATAGAAAGACCGAAACTTTTCATCAAATTTCAAGCGGATAGAGTCAGT 180
|| | ||||| |||||||||||||||| ||||| || ||||| | | | |||||||
Sbjct 189 GG-TAGTGTTCTATAGAAAGACCGAAAGTTTTCTTC-AATTT----C--A-A-AGTCAGT 238
Query 181 GGCGATGTCTTGGGCTGGTCCTGAAGATATTTATCTTTCAACCTCACTCGCTAGTTATCT 240
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 239 GGCGATGTCGTGGGCTGGTCCTGAAGAAATTTATCTTTCAACATCACTCGCTAGTTATCT 298
Query 241 CGATAGAAAACTACTTGTGCTCCTTAGAGATGGTAGAAAGCTAATGGGAATACTCCGTTC 300
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 299 CGATAGAAAACTACTTGTGCTTCTTAGAGATGGTAGAAAGCTAATGGGAACACTCCGTTC 358
Query 301 CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGA 418
Query 361 ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGAT 478
Query 421 TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCGCCGCATATGATTCGTGTCTCAGAGGT 480
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 479 TGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCTCCACATATGATTCGCGTCTCAGAGGC 538
Query 481 AGAGATTAAGAGGGCCCAAAAGGTGGAGAGAGAAGCGAGTGAGCTGAGAGGAACAATGAG 540
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 AGAGATTAAAAGGGCACAAAAGGTGGAGAGGGAAGCGAGTGAGCTGAGAGGAACAATGAG 598
Query 541 GAAGAGAATGGAGTTTCTCGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAAGAGAATGGAGTTTCTTGACTTTGATTAAACCAGATTGTATCCCCATTCATTATTGGC 658
Query 601 CTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGATGCTCTGCTTTGGCTCGCAAGTTTTATGATGAGCCTTTTTGGTGTGTTGACTTAGG 718
Query 661 GGATCGACGCAAGTCTTATGTTTCATTTGGGAAGAACATGACAGAATAA-TCTGTGTACT 719
|||||||||||| |||| |||||||||| ||| ||| |||||| | ||| ||||||||||
Sbjct 719 GGATCGACGCAATTCTTGTGTTTCATTTTGGATGAATATGACA-A-TAAATCTGTGTACT 776
Query 720 TCT-TC---GGATTTATTTATCTTTTTAAGAGAAAAATATTTAGCAATTTCTTTC 770
| | || |||| |||||| |||||||||| |||||| || |||||||||||||
Sbjct 777 TTTGTCTTTGGATCTATTTACCTTTTTAAGAAAAAAATGTTAAGCAATTTCTTTC 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5