BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478823
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2488 0.0
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1... 1218 0.0
> AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4672919-4676162 FORWARD LENGTH=1604
Length=1604
Score = 2488 bits (1347), Expect = 0.0
Identities = 1526/1609 (95%), Gaps = 25/1609 (2%)
Strand=Plus/Plus
Query 1 ATAGTACCTGAACCCTAAGCGGAGGaaaaataaaaaaTTGTCGAGGAGAAACAAAC--AG 58
|||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||| ||
Sbjct 16 ATAGTACCTGAACCCT-AGCGGAGG-AAAATCAAAAATTGTCTAGGAGAAACAAACAGAG 73
Query 59 ATATCTTTCTTT-TTTATTCGCAGTGGGGGaaaaaaaTGCAGAATCCGAGACTGAAGCAA 117
|||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 74 ATATCTTTCTTTCTTT-TTATCAGTGGGGAAAAAAAATGCAGAATCCGAGACTGAAGCAA 132
Query 118 CATCAGcaacaacaacaacaacaacaacaaGCTTTGATGCAGCAACAAGCTCTGATGCAT 177
|||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 133 CATCAG------CAGCAACAACAACAACAAGCTATGATGCAGCAACAAGCTCTGATGCAG 186
Query 178 CAACACTCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTGTCCCAAGT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 187 CAACACTCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTGTTCCAAGT 246
Query 238 GGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTGGAAACATT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTGGAAACATC 306
Query 298 CATACACAGGTCACAGAGCCTCTGCTTCAGGAGATTTTTACAAGCACTGGCCCTGTTGAA 357
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 307 CATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACTGGCCCTGTTGAA 366
Query 358 AGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGACCGA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 AGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGA 426
Query 418 AGATCTGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGACAGCCTATC 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGATCCGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGACAGCCTATC 486
Query 478 AAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCATTTCAACATT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCATTTCAACATT 546
Query 538 TTTGTTGGAGATCTCAGCCCGGAGGTCACTGACGCGACATTATATCAAAGCTTTGCTGTC 597
||||||||||||||||| || ||||||||||| || |||||||||||||||||| |||||
Sbjct 547 TTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTC 606
Query 598 TTTTCCAGTTGTTCGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCAAGAGGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 607 TTTTCCAGTTGTTCGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGC 666
Query 658 TTTGGGTTTGTTTCTTTCCGCAATCAACAGGATGCTCAAACTGCCATTAATGAGATGAAT 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTGGGTTTGTTTCCTTCCGCAATCAACAGGATGCTCAAACTGCCATTAATGAGATGAAT 726
Query 718 GGTAAGTGGTTAAGTAGCAGACAGATCAGATGCAACTGGGCCACGAAGGGCGCTACTTCT 777
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 727 GGTAAGTGGTTAAGTAGCAGACAAATCAGATGCAACTGGGCCACGAAGGGCGCTACTTCT 786
Query 778 GGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTAGAACTTACAACTGGGTCATCA 837
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 787 GGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCA 846
Query 838 GAGGATGGTAAAGAGACATTAAATGAGGAAGCACCTGAAAACAATTCTCAGTTTACCACT 897
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 847 GAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACT 906
Query 898 GTTTATGTGGGAAACCTTGCTCCAGAGGTAACTCAGCTTGATCTACACCGCTACTTCCAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 907 GTTTATGTGGGAAACCTTGCTCCAGAGGTAACTCAGCTTGATCTACACCGTTACTTCCAT 966
Query 958 GCTCTTGGCGCTGGAGTTATTGAAGAAGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTT 1017
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 967 GCTCTTGGCGCTGGAGTTATTGAGGAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTC 1026
Query 1018 GTGAGATATAACACTCATCCTGAGGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCT 1077
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCT 1086
Query 1078 TACCTGTTTAACAGACAGATTAAGTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACA 1137
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TACCTCTTTAACAGACAGATAAAGTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACA 1146
Query 1138 GCCTCAAACCCACTTCCCCCACCTGCCCCAGCACCAGTTCCTGGTCTGTCTGCAGCTGAT 1197
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1147 GCCTCAAACCCACTTCCCCCACCTGCCCCAGCTCCAGTTCCTGGTCTATCTGCAGCTGAT 1206
Query 1198 CTCTTAGCCTATGAGAGGCAATTGGCACTAAGCAAGATGGCTAGTGTGAATGCGTTAATG 1257
||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1207 CTCCTAAACTATGAGAGGCAATTGGCACTTAGCAAGATGGCAAGTGTGAATGCGTTAATG 1266
Query 1258 CATCCACAGGGTCAGCACCCTCTAAGGCAAGCTGCTCATGGAATAAATGCCGCTGGAGCT 1317
|||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1267 CATCAACAGGGTCAACACCCTCTAAGGCA-G--GCTCATGGAATAAATGCCGCTGGAGCA 1323
Query 1318 ACTGCAGCCATGTACGACGGTGGCTTTCAGAATGTAGCCGCCGCACAGCAGCTTATGTAC 1377
|||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1324 ACTGCAGCCATGTATGATGGTGGCTTTCAGAATGTAGCCGCCGCACAGCAACTCATGTAC 1383
Query 1378 TATCAGTAATAAACCTCAGATCGTGGCGCCAATCTTAAGTTTCAATCTCTTTGAtttttt 1437
||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||
Sbjct 1384 TATCAGTAATAAACCTCAGTTCGTGGCGCCGATCTCAAGTTTCAATCTCTTTGCTTTTT- 1442
Query 1438 ctctttttctttttttttttCTAGAACTTGTTTGTTTGTGTGTGTCTGTTTGTCTTCTCT 1497
|||||||| ||||| ||| |||||||||||||||| |||||| |||||||||| |||
Sbjct 1443 CTCTTTTT-TTTTTGTTTGTCTAGAACTTGTTTGT--GTGTGT--CTGTTTGTCT-CTC- 1495
Query 1498 CACTGAAGTTATCTATATAAA-TTTTATCCGCAGTTGTATGCTTAGTTATGTATTCCCAT 1556
||| |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 1496 -ACTTAAGTTATCTATATAAAGTTTTATCTGCAGTTGTATGATTAGTTATGTATTCCCAT 1554
Query 1557 GGATTGTACGACAAGCGAATTACATTCAATAAAAGGGATTTGGATATCC 1605
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGATTGTAAGACAAGCGAATTACATTCAATAAAAGGGATTTGGATATCC 1603
> AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein
1A | chr1:20183581-20186909 REVERSE LENGTH=1720
Length=1720
Score = 1218 bits (659), Expect = 0.0
Identities = 1104/1310 (84%), Gaps = 66/1310 (5%)
Strand=Plus/Plus
Query 113 AGCAACATCAGcaacaacaacaacaacaacaacaaGCTTTGATGCAGCAACAAGCTCTGA 172
||||||| || ||||||||||| ||||| ||||||||| |||| ||||||||| |||
Sbjct 111 AGCAACAACAACAACAACAACAGCAACATCAACAAGCTATGAT---TCAACAAGCTATGA 167
Query 173 TGCATCAACA--C-TCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTG 229
|||| ||||| | |||||||| |||||||||||| |||||||||||||| | ||||||
Sbjct 168 TGCAACAACATCCTTCTCTTTATCATCCTGGTGTTATGGCTCCTCCTCAGATGGAGCCTT 227
Query 230 TCCCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTG 289
| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||
Sbjct 228 TACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTGTATGCTG 287
Query 290 GAAACATTCATACACAGGTCACAGAGCCTCTGCTTCAGGAGATTTTTACAAGCACTGGCC 349
||||||||||||| |||||||||||| ||| ||||| ||||||||| |||| ||||| |
Sbjct 288 GAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATTTTTGCAAGTACTGGTC 347
Query 350 CTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACT 409
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 CTATTGAAAGCTGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACT 407
Query 410 TTGACCGAAGATCTGCT-GCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGA 468
|||| ||||||| |||| | | |||||||| || |||| |||||||||||| | ||||||
Sbjct 408 TTGATCGAAGATGTGCTAG-TATGGCTATAATGACTCTTAACGGAAGGCATATATTTGGA 466
Query 469 CAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCAT 528
|||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 467 CAGCCTATGAAAGTTAATTGGGCGTATGCAACTGGTCAAAGGGAAGATACATCAAGTCAT 526
Query 529 TTCAACATTTTTGTTGGAGATCTCAGCCCGGAGGTCACTGACGCGA-CATTATATCAAAG 587
||||||||||||||||||||||| || || ||||| ||||| || | |||| | | | ||
Sbjct 527 TTCAACATTTTTGTTGGAGATCTTAGTCCAGAGGTTACTGATGC-AGCATTGTTTGATAG 585
Query 588 CTTTGCTGTCTTTT-CCAG-T--TGTTC---------GGATGCGAGAGTTATGTGGGACC 634
|||| ||| ||||| ||| | | ||| ||| || ||||| ||||||||||
Sbjct 586 CTTTTCTG-CTTTTAACAGCTGCTCTTCTTATTATAGGGACGCAAGAGTAATGTGGGACC 644
Query 635 AAAAAACTGGGCGCTCAAGAGGCTTTGGGTTTGTTTCTTTCCGCAATCAACAGGATGCTC 694
| |||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 645 AGAAAACTGGACGCTCAAGAGGCTTTGGTTTTGTTTCCTTCCGTAATCAGCAGGATGCTC 704
Query 695 AAACTGCCATTAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAGATCAGATGCAACT 754
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 705 AAACTGCCATAAATGAGATGAATGGTAAATGGGTAAGTAGCAGACAGATCAGATGCAACT 764
Query 755 GGGCCACGAAGGGCGCTACTTCTGGTGATGATAAGC-TCAGTTCTGATGGAAAAAGTGTT 813
|||| || || || ||||||| ||| || || || | | || ||||||||||||||||||
Sbjct 765 GGGCGACAAAAGGTGCTACTTTTGGCGAGGACAAACAT-AGCTCTGATGGAAAAAGTGTT 823
Query 814 GTAGAACTTAC-AACTGGGTCATCAGAGGATGGTAAAGAGACAT-T-AAATGAGGAAGCA 870
||||||||||| ||| || || ||||||||||||| |||| | | | |||||| || ||
Sbjct 824 GTAGAACTTACTAAC-GGATCTTCAGAGGATGGTAGAGAG-C-TGTCAAATGAAGATGCC 880
Query 871 CCTGAAAACAATTCTCAGTTTACCACTGTTTATGTGGGAAACCT-TGCTCCAGAGGTAAC 929
|||||||||||| |||| ||||| ||||| ||||| ||||| || | ||||||| |||||
Sbjct 881 CCTGAAAACAATCCTCAATTTACAACTGTCTATGTAGGAAATCTCT-CTCCAGAAGTAAC 939
Query 930 TCAGCTTGATCTACACCG-CTACTTCCATGCTCTTGGCGCTGGAGTTATTGAAGAAGTCC 988
|||||||||||||||||| ||| ||| || | ||||| |||||||| || ||||| ||||
Sbjct 940 TCAGCTTGATCTACACCGTCTA-TTCTATACCCTTGGTGCTGGAGTGATCGAAGAGGTCC 998
Query 989 GTGTCCAACGAGACAAAGGCTTTGGTTTTGTGAGATATAACACTCATC-CTGAGGCTGCT 1047
||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 999 GTGTCCAGCGAGACAAAGGGTTTGGTTTTGTGAGATATAACACTCATGAC-GAGGCTGCT 1057
Query 1048 CTTGCTATTCAGATGGGTAACACTCAGCCTTACCTGTTTAACAGACAGATTAAG-TGCTC 1106
||||||||||||||||| ||| ||||||||| ||| |||| ||||||||| ||| || ||
Sbjct 1058 CTTGCTATTCAGATGGGCAACGCTCAGCCTTTCCTCTTTAGCAGACAGAT-AAGGTGTTC 1116
Query 1107 ATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTCCCCCACCTGCCCC 1166
||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1117 CTGGGGAAACAAACCAACTCCATCAGGCACAGCCTCAAACCCACTTCCCCCACCAGCCCC 1176
Query 1167 AGCACCAGTTCCTGGTCTGTCTGCAGCTG-ATCTCTTAGCCTATGAGAGGCAATTGGCAC 1225
||| |||| ||| |||||||||| || | ||||||||||| ||||||||| |||| |
Sbjct 1177 GGCATCAGTCCCTTCTCTGTCTGCAA-TGGACCTCTTAGCCTACGAGAGGCAACTGGCTC 1235
Query 1226 TAAGCAAGATGGCTAGTGTGAATGCGTTAATGCATCCACAGGGTCAGCACCCTCTAAGGC 1285
|| || | | | | | ||||||| |||| ||| || |||| ||||
Sbjct 1236 TA-GC-------C-A-----A--G----A-TGCATCCTCAGGCTCAACATTCTCTGAGGC 1274
Query 1286 AAGCTGCTCATGGAATAAATGCCGCTGGAGCTACTGCAGCCATGTACGACGGTGGCTTTC 1345
|||| | || |||| | |||| ||||||| |||||||| ||||| || ||||||| ||
Sbjct 1275 AAGCAGGTCTTGGAGTCAATGTTGCTGGAGGAACTGCAGCTATGTATGATGGTGGCTATC 1334
Query 1346 AGAATGTAGCCGCCGC--A-CAGCAGCTTATGTACTATCAGTAATAAACC 1392
|||||||||| || || | |||||||| |||||||||||||||||||||
Sbjct 1335 AGAATGTAGCTGCGGCCCATCAGCAGCTCATGTACTATCAGTAATAAACC 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5