BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478824
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14110.3 | Symbols: FLU | Tetratricopeptide repeat (TPR)-lik... 1568 0.0
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 78.7 1e-13
> AT3G14110.3 | Symbols: FLU | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4676175-4677689 REVERSE LENGTH=1088
Length=1088
Score = 1568 bits (849), Expect = 0.0
Identities = 975/1036 (94%), Gaps = 8/1036 (1%)
Strand=Plus/Plus
Query 2 TTGTTTTATCCTCTCAGAGAGCTTTCTTTAGAGATGGCGGCGCTTATCCGGTGTTGCTCC 61
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 55 TTGTTTTATCCTCTCAGAGAGCTTTCTTTAGTGATGGCGGCGCTTATCCGGTGTTGCTCC 114
Query 62 TCCTTTTCTCATACCTCCGGTGGCCAACCACCGCCGAGAGACATGTCTCGAGGTCCAGAG 121
||||| |||||||| ||||||||||||||||||||| | |||| |||||||| |||||||
Sbjct 115 TCCTTCTCTCATACTTCCGGTGGCCAACCACCGCCGCGTGACAAGTCTCGAGCTCCAGAG 174
Query 122 ATTGGAAAATTTGCTACATCTATTGGCTACTCAGTAGTCAGAAAACCTGGGGATCATCAT 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 175 ATTGGAAAATTTGCTACATCTATTGGCTACTCAGTAGTCAGAAAACCTGGGGATCATCCT 234
Query 182 CCTTTCTTCAAAATTATACATTCGTCTTCCCTGCCCAAGGAGCGTGATGGCAAGGGAACC 241
||||||| ||||||||||||||||||||| | ||| |||||||| | || ||||||| |
Sbjct 235 CCTTTCTCCAAAATTATACATTCGTCTTCACAGCCTAAGGAGCGACAAGGAAAGGGAATC 294
Query 242 ATAAAAACGCCATTTCCCAGCG-GGGAAACTCTTGACAAGTTTTCGGCTTTTGA-G--GG 297
|| ||||||||||| |||| | ||| | |||||||||||||||| |||||||| | ||
Sbjct 295 TTACAAACGCCATTTGCCAGTGTGGG-ATCTCTTGACAAGTTTTCAGCTTTTGAGGTAGG 353
Query 298 AATTGGGAGGCTCAAATTACCGGTGATGGCAGCGTTGTTGACAAACTCTCTACAGATGGC 357
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 354 AATTGGGAGGCTCAAATTACCGGTGATGGCAGTGTTGTTGACAAACTCCCTTCAGATGGC 413
Query 358 TACACCACTTGAAGCTTTGGCTGCTGAGATATGTGAGCCTGAGAGCTCCATGTTCAGCAT 417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TACACCTCTTGAAGCTTTGGCTGCTGAGATATGTGAGCCTGAGAGCTCCATGTTCAGCAT 473
Query 418 GCCAATTTTGTTGCTTGTAGCTCTTATTGGAGCCACCGTTGGAGGGTTGGTTGCTCGGCA 477
||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 474 GCCTATTTTGTTGCTTGTTGCTCTTATTGGAGCCACCGTTGGAGGGTTGCTTGCTCGGCA 533
Query 478 GAGGAAAGGGGAGTTACAGAGGTTGAATGAACAACTACGACAGATTAACGCAGCTCTTAG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GAGGAAAGGGGAGTTACAGAGGTTGAATGAACAACTACGACAGATTAACGCAGCTCTTAG 593
Query 538 GAGACAAGCCAAAATCGAGTCTTATGCACCAAGCTTGAGTTATGCCCCAGTGGGAGCAAG 597
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 GAGACAAGCCAAAATCGAGTCTTATGCACCAAGCTTGAGTTATGCTCCAGTGGGAGCAAG 653
Query 598 AATCCCAGAGAGTGAAATCATTGTGGACCCAAAGAAACAAGAGTTGATTTCCAAGTTGAA 657
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 654 AATCCCAGATAGTGAAATCATTGTGGAACCAAAGAAACAAGAGTTGATTTCCAAGTTGAA 713
Query 658 AACAGGTAAAACCTTTCTGAGGAACCAAGAACCAGAGCAAGCGTATGCAGAGTTCAAGAT 717
|||||| ||||||||||| |||||||||||||||||| |||| ||| |||||||||||||
Sbjct 714 AACAGGAAAAACCTTTCTTAGGAACCAAGAACCAGAGAAAGCTTATACAGAGTTCAAGAT 773
Query 718 AGCTTTGGAACTTGCCCAGGGTCTCAAAGACCCCATCGAAGAAAAGAAGGCTGCAAGAGG 777
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 774 AGCTTTGGAACTTGCCCAGAGTCTCAAAGACCCCACCGAAGAAAAGAAGGCTGCAAGAGG 833
Query 778 CTTAGGAGCCTCGCTGCAACGTCAAGGGAAGTATAGGGAAGCCATACAGTATCACTCCAT 837
| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 834 CCTAGGCGCCTCGCTGCAGCGCCAAGGGAAGTATAGGGAAGCCATACAGTATCACTCCAT 893
Query 838 GGTTCTAGCCATCTCAAAGAGGGAAGGTGAAGATTCTGGAATCACTGAAGCATATGGAGC 897
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 894 GGTTCTAGCCATCTCAAAGAGGGAAAGTGAAGATTCTGGAATCACTGAAGCATATGGAGC 953
Query 898 TATTGCAGACTGTTATACCGAGCTGGGAGATCTCGAGAAAGCTGGAAAATTCTATGATAC 957
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 TATTGCAGACTGTTATACCGAGCTGGGAGATCTCGAGAAAGCTGGAAAGTTCTATGATAC 1013
Query 958 GTACATTTCTCGGTTAGAGACAGACTGATTCTTCCTCAAGGTCTTTTGTCT--GTTGTCT 1015
||||||| ||||||||||||| ||||||| ||||| ||| || |||| ||| |||||||
Sbjct 1014 GTACATTGCTCGGTTAGAGACTGACTGATCCTTCCGCAATGTTTTTT-TCTTTGTTGTCT 1072
Query 1016 GTTTGTGTTCATGTAA 1031
|||| |||||||||||
Sbjct 1073 GTTTATGTTCATGTAA 1088
> AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4672919-4676162 FORWARD LENGTH=1604
Length=1604
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 1044 TGGATATCCAAATCCCTTTTATTGAATGTAATTCGCTTGTCGTAC 1088
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1604 TGGATATCCAAATCCCTTTTATTGAATGTAATTCGCTTGTCTTAC 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53312978790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5