BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478828
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14130.1 | Symbols: | Aldolase-type TIM barrel family prote... 1834 0.0
AT3G14150.1 | Symbols: | Aldolase-type TIM barrel family prote... 1517 0.0
> AT3G14130.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:4685646-4688309 REVERSE LENGTH=1442
Length=1442
Score = 1834 bits (993), Expect = 0.0
Identities = 1205/1305 (92%), Gaps = 23/1305 (2%)
Strand=Plus/Plus
Query 146 ATGGATCAAATCGTTAACGTAGATGAGTTTCAAGAGCTGGCCAAGCAGGCTCTCCCTAAA 205
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 153 ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAGCTGGCCAAACAGGCCCTCCCTAAG 212
Query 206 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTTAAGGAAAATGTG 265
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 213 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAAAATGTC 272
Query 266 CTAGCTTTCCGTCGAATCATGCTTAGGCCTCGAGTTCTTGTTGATGTGAGCAAAATAGAT 325
| |||||||||| |||||||| |||||||| | |||||||||||||||||||| ||||||
Sbjct 273 CAAGCTTTCCGTAGAATCATGTTTAGGCCTAGGGTTCTTGTTGATGTGAGCAACATAGAT 332
Query 326 ATGTCCACAACCATATTGGGTTACCCAGTCTCAAG-TCCTATCATGATTGCTCCAACAGC 384
||||| |||| || |||||||||||| |||| || ||| ||||||||||||||||||||
Sbjct 333 ATGTCTACAAGTATGTTGGGTTACCCAATCTC-AGCTCCCATCATGATTGCTCCAACAGC 391
Query 385 AATGCATAAGTTGGCTCATCCTGAAGGAGAAATCGCCACCGCGAAAGCTGCAGCTGCGTG 444
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 392 AATGCATAAGTTGGCTCATCCTAAAGGAGAAATCGCCACAGCGAAAGCTGCAGCTGCGTG 451
Query 445 TAACACTATCATGATAGTATCATTCATGTCTACTTGCACTATTGAGGAGGTTGTTTCCAG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 452 TAACACTATCATGATAGTATCATTCATGTCTACTTGCACTATTGAGGAGGTTGCTTCCAG 511
Query 505 TTGTAATGCTGTTCGGTTTCTTCAAATATATGTGTACAAAAGACGTGATGTAACTGCTCA 564
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 512 TTGTAACGCTGTTCGGTTTCTTCAAATATATGTGTACAAGAGACGTGATGTAACAGCTCA 571
Query 565 GATCGTGAAAA-AGGCTGAGAAAGCTGGATTCAAGGCCATAGTTCTGACTGTTGATGTTC 623
||| ||||||| || |||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 572 GATTGTGAAAAGAG-CTGAAAAAGCTGGATTCAAGGCTATAGTTCTAACTGTTGATGTTC 630
Query 624 CTAGACTTGGTAGAAGGGAAGCTGATATAAAGAACAAAATGATATCCCCGCAGCTGAAGA 683
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 631 CCAGACTTGGTAGAAGGGAAGCAGATATAAAGAACAAAATGATATCCCCACAGCTGAAGA 690
Query 684 ACTTTGAAGGTTTAGTTTCAACCGAAGTCCGACCTAATGAAGGTTCAGGGCTTGAAGCCT 743
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 691 ATTTTGAAGGCTTAGTTTCAACCGAAGTCCGACCTAATGAAGGTTCAGGGGTTGAAGCCT 750
Query 744 TTGCCTCTAGTGCACTTGATGCTTCGTTAAGTTGGAAGGACATCGAATGGTTAAGATCTA 803
|||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 751 TTGCCTCTAGTGCATTTGATGCTTCGTTAAGCTGGAAGGATATCGAATGGTTAAGATCTA 810
Query 804 TTACAAAGTTGCCAATTCTGGTCAAAGGGTTACTCACACGTGAAGATGCTCTTAAGGCTG 863
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 811 TTACAAAGTTGCCAATTCTGGTCAAAGGGTTACTCACACGTGAAGACGCTCTTAAGGCTG 870
Query 864 TTGAAACTGGTGTAGATGGGATAGTTGTATCTAACCACGGGGCTCGCCAGCTCGACTATT 923
||||| | ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 871 TTGAAGCCGGTGTAGATGGAATAGTGGTATCCAACCACGGGGCTCGCCAGCTCGACTATT 930
Query 924 CCCCTGCTACAATAACTGTTTTAGAAGAGGTTGTTCATGTTGTTAGAGGTAGGATTCCGG 983
|||| ||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 931 CCCCGGCTACGATAACTGTTTTAGAAGAGGTTGTTCATGCTGTGAAAGGTAGGATTCCGG 990
Query 984 TCTTGCTTGATGGAGGAGTAAGAAGAGGAACAGATGTTTTCAAAGCGCTGGCGCTTGGAG 1043
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 991 TTTTGCTTGATGGAGGAGTAAGACGAGGAACAGATGTTTTCAAAGCGCTGGCGCTCGGAG 1050
Query 1044 CACAAGCTGTTCTTATAGGGAGGCCAATTGTGTATGGGCTTGCAGCAAAGGGTGAAGATG 1103
||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||
Sbjct 1051 CACAAGCTGTTCTTATAGGGAGGCCTATAGTCTATGGGCTTGCAGCTAAGGGTGAAGATG 1110
Query 1104 GAGTGAAAAAAGTGATTGAGATGCTGAAGAATGAGTTAGAGATTACTATGGCCCTTTCTG 1163
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1111 GAGTGAAAAAAGTGATTGATATGCTGAAAAATGAGTTTGAGATTACTATGGCCCTTTCTG 1170
Query 1164 GTTGTCCAACCATTGATGACATAACCAGAAACCATGTTAGGACAGAGAATGAGAGACTTC 1223
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1171 GCTGTCCAACCATTGATGACGTAACCAGAAACCATGTTAGGACAGAGAATGAGAGAATTA 1230
Query 1224 GCTCTATGCTCTGATCCAAAAAAGTAAAACCAACAGATCTGGTCTCAGAGACTTTAA-CA 1282
||||||||||||||| |||||||||||||||| ||||||||||||| || ||
Sbjct 1231 AATCTATGCTCTGATCC-------TAAAACCAACAGATCTAGTCTCAGAGACTT-AATCA 1282
Query 1283 GACAGTTGGACAAGAGTCTGAAATACTGTCACA-GCACATAAATAATAAAGCTCTATTTC 1341
||||||||||||| ||| ||||||||||||| | |||||||||||| |||||||||||||
Sbjct 1283 GACAGTTGGACAACAGTATGAAATACTGTCA-ATGCACATAAATAA-AAAGCTCTATTTC 1340
Query 1342 AAGACAAGGGATTAGTACGTTTGGACTTTGCGATGTAtttttttt--CTGCTTGATTTGC 1399
||||||| | ||||||||||||||||| ||| |||||||| ||| || ||||||
Sbjct 1341 AAGACAA----T-AGTACGTTTGGACTTTGTTCTGTTTTTTTTTTTTCTGATTAATTTGC 1395
Query 1400 TGGTTATAAACTTATAATAAGCCTATGAGAGAAGCGGTTTTCTGA 1444
|||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1396 TGGTTATAAACTTATAATAAGCCTTTGAGAGAAGTGGCTTTCTGA 1440
Score = 215 bits (116), Expect = 1e-54
Identities = 132/140 (94%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 6 ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAACTGGCCAAACAGAcccccccTAAA 65
||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 153 ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAGCTGGCCAAACAGGCCCTCCCTAAG 212
Query 66 ATGTACTATGATTTCTACAATGGAGGAGCAGAAGATCAACACACTCTCAAGGAAAATGTG 125
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 213 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAAAATGTC 272
Query 126 CTAGCTTTCCGTAGAATCAT 145
| ||||||||||||||||||
Sbjct 273 CAAGCTTTCCGTAGAATCAT 292
> AT3G14150.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:4690450-4693001 REVERSE LENGTH=1389
Length=1389
Score = 1517 bits (821), Expect = 0.0
Identities = 1043/1149 (91%), Gaps = 20/1149 (2%)
Strand=Plus/Plus
Query 146 ATGGATCAAATCGTTAACGTAGATGAGTTTCAAGAGCTGGCCAAGCAGGCTCTCCCTAAA 205
||||||||||||||||| || |||||||||||||||||||| || || || ||||||||
Sbjct 81 ATGGATCAAATCGTTAATGTGGATGAGTTTCAAGAGCTGGCTAAACAAGCCCTCCCTAAG 140
Query 206 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTTAAGGAAAATGTG 265
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 141 ATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAAAATGTC 200
Query 266 CTAGCTTTCCGTCGAATCATGCTTAGGCCTCGAGTTCTTGTTGATGTGAGCAAAATAGAT 325
| |||||||||| |||||||| ||||||| | ||||| |||||||||||||||||||||
Sbjct 201 CAAGCTTTCCGTAGAATCATGTTTAGGCCGAGGGTTCTCGTTGATGTGAGCAAAATAGAT 260
Query 326 ATGTCCA-CAACCATATTGGGTTACCC-AGTCTCAAG-TCCTATCATGATTGCTCCAACA 382
||||| | ||| |||||||||||||| | |||| | ||| ||||||||||||||||||
Sbjct 261 ATGTCTACCAA-AATATTGGGTTACCCTA-TCTC-TGCTCCAATCATGATTGCTCCAACA 317
Query 383 -GCAATGCATAAGTTGGCTCATCCTGAAGGAGAAATCGCCACCGCGAAAGCTGCAGCTGC 441
| ||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 318 GGAAAT-CATAAGTTGGCTCATCCTGAAGGAGAAACCGCTACTGCGAAAGCTGCAGCTGC 376
Query 442 GTGTAACACTATCATGATAGTATCATTCATGTCTACTTGCACTATTGAGGAGGTTGTTTC 501
|||||| ||||||||||||||||||| ||||||| | |||||| |||||||| ||| |||
Sbjct 377 GTGTAATACTATCATGATAGTATCATACATGTCTTCATGCACTTTTGAGGAGATTGCTTC 436
Query 502 CAGTTGTAATGCTGTTCGGTTTCTTCAAATATATGTGTACAAAAGACGTGATGTAACTGC 561
||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 437 CAGTTGTAACGCTGTTCGGTTTCTTCAAATATATGTGTACAAGAGACGGGACATAACTGC 496
Query 562 TCAGATCGTGAAAAAG-GCTGAGAAAGCTGGATTCAAGGCCATAGTTCTGACTGTTGATG 620
|||| | ||| ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 497 TCAGGTGGTG-AAAAGAGCTGAGAAAGCTGGGTTTAAGGCCATAGTTCTGACTGTTGATG 555
Query 621 TTCCTAGACTTGGTAGAAGGGAAGCTGATATAAAGAACAAAATGATATCCCCGCAGCTGA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTCCTAGACTTGGTAGAAGGGAAGCTGATATAAAGAACAAAATGATATCCCCGCAGCTGA 615
Query 681 AGAACTTT-GAAGGTTTAGTTTCAACCGAAGTCCGACCTAATGAAGGTTCAGGGCTTGAA 739
|||| ||| ||||||||| ||||||||||||||||||||| | ||||||||||| | ||
Sbjct 616 AGAA-TTTCGAAGGTTTATTTTCAACCGAAGTCCGACCTAGTAAAGGTTCAGGGGTACAA 674
Query 740 GCCTTTGCCTCTAGTGCACTTGATGCTTCGTTAAGTTGGAAGGACATCGAATGGTTAAGA 799
||||| |||||| ||||| |||||||||| || || ||||||||||| ||||||||||||
Sbjct 675 GCCTTCGCCTCTCGTGCATTTGATGCTTCATTTAGCTGGAAGGACATTGAATGGTTAAGA 734
Query 800 TCTATTACAAAGTTGCCAATTCTGGTCAAAGGGTTACTCACACGTGAAGATGCTCTTAAG 859
||||||||| |||| || ||||||||||||||| ||||||| || ||||| |||||||||
Sbjct 735 TCTATTACAGAGTTACCTATTCTGGTCAAAGGGATACTCACCCGAGAAGACGCTCTTAAG 794
Query 860 GCTGTTGAAACTGGTGTAGATGGGATAGTTGTATCTAACCACGGGGCTCGCCAGCTCGAC 919
||||||||| ||||||||||||| ||| ||||||||||||| |||| |||||||||||||
Sbjct 795 GCTGTTGAAGCTGGTGTAGATGGAATAATTGTATCTAACCATGGGGGTCGCCAGCTCGAC 854
Query 920 TATTCCCCTGCTACAATAACTGTTTTAGAAGAGGTTGTTCATGTTGTTAGAGGTAGGATT 979
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 855 TATTCCCCTGCTACAATAACTGTTTTAGAAGAGGTTGTTCAAGTTGTTAGAGGTAGGATT 914
Query 980 CCGGTCTTGCTTGATGGAGGAGTAAGAAGAGGAACAGATGTTTTCAAAGCGCTGGCGCTT 1039
||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||| |||
Sbjct 915 CCGGTTTTGCTTGATGGAGGAGTAAGACGAGGGACAGATGTTTTCAAAGCCCTGGCACTT 974
Query 1040 GGAGCACAAGCTGTTCTTATAGGGAGGCCAATTGTGTATGGGCTTGCAGCAAAGGGTGAA 1099
||||||||||||||||||||||||||||| || | |||||||||||||| |||||||||
Sbjct 975 GGAGCACAAGCTGTTCTTATAGGGAGGCCTATAATCTATGGGCTTGCAGCTAAGGGTGAA 1034
Query 1100 GATGGAGTGAAAAAAGTGATTGAGATGCTGAAGAATGAGTTAGAGATTACTATGGCCCTT 1159
||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||| |||
Sbjct 1035 GATGGAGTGAAAAAAGTGATTGATATGTTAAAGAATGAGTTTGAGATTACTATGGCTCTT 1094
Query 1160 TCTGGTTGTCCAACCATTGATGACATAACCAGAAACCATGTTAGGACAGAGAATGAGAGA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TCTGGTTGTCCAACCATTGATGACATAACCAGAAACCATGTTAGGACAGAGAATGAGAGA 1154
Query 1220 CTTCGCTCTATGCTCTGATCCAAAAAAGTAAAACCAACAGATCTGGTCTCAGAGACTTTA 1279
|||| |||||||||||||||||||||| ||||||||| |||||| ||| |||| |
Sbjct 1155 CTTCACTCTATGCTCTGATCCAAAAAA------CCAACAGATATGGTCTGAGAAACTT-A 1207
Query 1280 A-CAGACAG 1287
| |||||||
Sbjct 1208 ATCAGACAG 1216
Score = 207 bits (112), Expect = 2e-52
Identities = 135/146 (92%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 1 ATTAGATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAACTGGCCAAAC-AGAccccc 59
|||||||||||||||||||||| ||||||||||||||||| ||||| |||| || ||| |
Sbjct 76 ATTAGATGGATCAAATCGTTAATGTGGATGAGTTTCAAGAGCTGGCTAAACAAG-CCCTC 134
Query 60 ccTAAAATGTACTATGATTTCTACAATGGAGGAGCAGAAGATCAACACACTCTCAAGGAA 119
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 135 CCTAAGATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAA 194
Query 120 AATGTGCTAGCTTTCCGTAGAATCAT 145
||||| | ||||||||||||||||||
Sbjct 195 AATGTCCAAGCTTTCCGTAGAATCAT 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5