BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478829
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14160.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase ... 1384 0.0
AT3G14140.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase ... 640 0.0
> AT3G14160.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase
family protein | chr3:4693361-4695604 FORWARD LENGTH=1908
Length=1908
Score = 1384 bits (749), Expect = 0.0
Identities = 919/998 (92%), Gaps = 24/998 (2%)
Strand=Plus/Plus
Query 1 ATGCATTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGTTTTGCCAGGAGTCTGTG 60
||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||
Sbjct 561 ATGTATTGTGATCTTGTGAATAGGGTGAATGATGTTACGTTGTCTTGCCAGGAGTCTGTG 620
Query 61 TC-TC--C---TG--C--AAGTGTTGAGCTTTCTAGTGTTGAGGAGCATAAGAGTGCTCA 110
|| || | || | ||| ||||||||||||||||||||||| || ||||||||||
Sbjct 621 TCTTCTACAGTTGTTCAGAAG-GTTGAGCTTTCTAGTGTTGAGGATCAAAAGAGTGCTCC 679
Query 111 AAAGGCTGATGAGGCAGGGAACTCTTCAAATGAAAGCAGCACAAGACATTTTGATCTCTT 170
||||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 680 AAAGGCTGATGGGGCAGGGAACTCTTCAAATGAAAGCAGTACGAGACATTTTGATATCTT 739
Query 171 TCTC-ATGAAGAAGGGGATAGTACTAAAACCCAGTCTTATGGAAAC-GAACAGAGTAAAG 228
|||| | |||||||||||||||||| || |||| ||| ||| | || ||||| ||||
Sbjct 740 TCTCGA-GAAGAAGGGGATAGTACTCAAGCCCAACCTTCTGG-TTCTGAGCAGAGAAAAG 797
Query 229 AAGAAAGCAGCTAAAGGGTACACTGGAATTGTTATTAGACCTGGAATGGTTCTTCTCAAG 288
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 798 AAGAAAGCAGCTAAAGGGTACAGTGGAACTGTTATTAGACCTGGAATGGTACTTCTCAAG 857
Query 289 AACTACTTGTCAATCAATGATCAAGTAATGATTGTTAACAAATGCCGTCAGCTATGTTTG 348
||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 858 AACTACTTGTCAATCAATGATCAAGTAATGATTGTGAACAAATGCCGTCGGCTGGGTTTG 917
Query 349 GGTGAAGGGGGCTTCTATCAACCAGGTTACAGGGATGAAGCGAAATTGCATTTGAAAATG 408
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 918 GGTGAAGGTGGCTTCTATCAACCAGGTTACAGGGATGAAGCAAAATTGCATTTGAAAATG 977
Query 409 ATGTGCCTTGGGAAAAACTGGGATCCTGAAACATCTCGATATGGAGAAATC-CGACCGA- 466
||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||| |
Sbjct 978 ATGTGCCTTGGCAAAAACTGGGACCCTGAAACATCTCGATATGGAGAAA-CTCGACC-AT 1035
Query 467 TTGATGGTTCTACTCCGCCAAAAATTCCTGCTGAATTCAATCAGTTTGTTGAGAAAGCAG 526
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TTGATGGTTCTACTGCGCCAAGAATTCCTGCTGAATTCAATCAGTTTGTTGAGAAAGCAG 1095
Query 527 TTAAAGAATCACAGTCCCTAGCGGCCTCATCAAATTCCAAGGAGACAAAGGGAGAAGATG 586
|||||||||||||||||||||||| | | |||||||| ||| |||||||||||| |||||
Sbjct 1096 TTAAAGAATCACAGTCCCTAGCGG-C-C-TCAAATTCAAAGCAGACAAAGGGAGGAGATG 1152
Query 587 GAATACCATTTATGTTACCTGACATCTGTATTGTTAACTTCTACACATCTACAGGGAGAC 646
||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 1153 AAATACCATTTATGTTACCTGACATCTGTATTGTTAACTTCTACTCATCCACCGGGAGAC 1212
Query 647 TTGGTCTCCATCAGGATAAAGATGAGAGCGAAAATTCCATTCGGAAGGGATTACCTGTTG 706
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1213 TTGGTCTCCATCAGGACAAAGATGAGAGCGAAAATTCCATCCGGAAGGGATTACCTGTTG 1272
Query 707 TTTCATTTTCTATTGGAGATTCAGCCGAGTTCTTGTATGGTGATCAGAGGGATGAAGACA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TTTCATTTTCTATTGGAGATTCAGCCGAGTTCTTGTATGGTGATCAGAGGGATGAAGACA 1332
Query 767 AGGCTGAAACGTTAATCTTGGAGTCTGGAGATGTTCTAATATTCGGTGGAAGATCAAGAA 826
|||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1333 AGGCAGAAACGTTAACCTTGGAGTCTGGAGATGTTCTATTATTCGGTGGAAGATCAAGAA 1392
Query 827 AAGTCTTCCATGGCGTCAGATCAATTTGTAAAGATACTGCCCCCAAGCCTCTTGTTCAGG 886
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||
Sbjct 1393 AAGTCTTCCATGGCGTCAGATCAATTCGTAAGGATACTGCCCCCAAGGCTCTTCTTCAGG 1452
Query 887 AAACGAGTCTCCGACCAGGTCGTCTGAATTTGACTTTTAGACAGTATTAGCCCAAAGCTA 946
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1453 AAACAAGTCTCCGACCAGGTCGTCTGAATTTGACTTTTAGGCAGTATTAGCCCAAAGCTA 1512
Query 947 GCAACTTTGGTTATGTATCTAGCA-CTGTCACCTGCTT 983
| |||||||| ||| |||||| | |||||||||||||
Sbjct 1513 GAAACTTTGGCAATGCATCTAG-AGCTGTCACCTGCTT 1549
Score = 305 bits (165), Expect = 5e-82
Identities = 236/269 (88%), Gaps = 9/269 (3%)
Strand=Plus/Plus
Query 999 TCCACACACGATCTGTGTTATATTATAACGTCTTTGCAATATG---A----TTGGTTTTT 1051
|||||||||| |||||||| |||||||| ||||| | |||||| | ||||||||
Sbjct 1642 TCCACACACGGTCTGTGTTGTATTATAAGGTCTTGGTAATATGATTATCCTTTGGTTTTC 1701
Query 1052 CTCTTTCTTCTCCGGAGTAGCAGCATGGATCCAGTGTCTATCGCTTCTTCTTAATTAGAT 1111
||||||||||||| || | || ||||||||||||| |||||| |||||||| ||||||||
Sbjct 1702 CTCTTTCTTCTCCAGAATTGCTGCATGGATCCAGTATCTATCTCTTCTTCTAAATTAGAT 1761
Query 1112 TGTTATGTTTTGTTTCAAAAAATTACTGTTTCTCAGTTTATTTATCTCTTCTGTCTACCA 1171
|||| || ||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1762 TGTTCTGATTTGTTT--TAAAATCACTGTTTCTCATTTTATTTATCTCTTCTGTCTACCA 1819
Query 1172 TTCCCTGTAACCCATTCTACCTTTTCAACTTTGTAAGAATTGGAGAAGATTTTGCGATTC 1231
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1820 TTTCCTCCAACCCATTCTACCTTTTCAACTTTGTAAGAATTGCAGAAGATTTTGTGAGTC 1879
Query 1232 TGGTTGAAATTGTACTTGTCTTGTTTTCC 1260
|||||||||||||||||||||||||||||
Sbjct 1880 TGGTTGAAATTGTACTTGTCTTGTTTTCC 1908
> AT3G14140.1 | Symbols: | 2-oxoglutarate-dependent dioxygenase
family protein | chr3:4688546-4690404 FORWARD LENGTH=1422
Length=1422
Score = 640 bits (346), Expect = 0.0
Identities = 577/683 (84%), Gaps = 38/683 (6%)
Strand=Plus/Plus
Query 1 ATGCATTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGTTTTGCCAGGAGTCTGTG 60
|||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 442 ATGCGTTGTGATCTTGTGAATAGGATGAAAGATGTTACGTTGGCTTGGCATGAGTCTGTG 501
Query 61 TCTCCTGCAAGTG-T-----TG---AGCTTTCTAGTGTTGAGGAGCATAAGAGT-GCTCA 110
||| || |||||| | || ||||||||||||||||| | ||||||| | ||||
Sbjct 502 TCTTCTACAAGTGATAAAAATGTTGAGCTTTCTAGTGTTGAGAATCATAAGA-TAGCTCC 560
Query 111 AAAGGCTGATGAGGC-AGGGAACTCTTCAAATGAAAGCAGCACAAGACATTTTGATCTCT 169
||||||||||| ||| |||||||||||||||||||||| | |||| | ||||||| |||
Sbjct 561 AAAGGCTGATG-GGCCAGGGAACTCTTCAAATGAAAGCTCCTCAAGTCCTTTTGATATCT 619
Query 170 TTCTCATGAAGAAGGGGAT-AGTACTAAAACCCAGTC-TTA-TGGAAAC-GAACAGAGTA 225
| |||| |||||||| ||| || |||||||||| || || ||||| | |||||||| |
Sbjct 620 TCCTCAAGAAGAAGGTGATGAG-ACTAAAACCC--TCCTTTCTGGAA-CTGAACAGAGAA 675
Query 226 AAGAAGAAAGCAGCTAAAGGGTA-CACTGGAATTGTTATTAGACCTGGAATGGTTCTTCT 284
|| |||||||||||||| |||| || ||||||||||||||||||||||||||| |||||
Sbjct 676 AAAAAGAAAGCAGCTAA-GGGTTTCAGTGGAATTGTTATTAGACCTGGAATGGTACTTCT 734
Query 285 CAAGAACTACTTGTCAATCAATGATCAAGTAATGATTGTTAACAAATGCCGTCAGCTATG 344
|||||||||||||||||||||| ||||||| |||||||| |||||||| ||||| || ||
Sbjct 735 CAAGAACTACTTGTCAATCAATAATCAAGTGATGATTGTGAACAAATGTCGTCAACT-TG 793
Query 345 -TTTGGGTGAAGGGGGCTTCTATCAACCAGGTTA-CAGGGATGAAGCGAAATTGCATTTG 402
|||||||||||| |||||||||||||| |||| || | ||| | | |||||||||
Sbjct 794 GTTTGGGTGAAGGAGGCTTCTATCAACCTGGTTTTCAAG-ATGGCGGGTTGTTGCATTTG 852
Query 403 AAAATGATGTGCCTTGGGAAAAACTGGGATCCTG--AAACATC-TCGATATGGAGAAATC 459
||||||||||||||||| ||||||||||| | || |||| | |||||||||||| ||
Sbjct 853 AAAATGATGTGCCTTGGCAAAAACTGGGA-C-TGTCAAACG-CGTCGATATGGAGAGATT 909
Query 460 CGACCGATTGATGGTTCTACTCCGCCAAAAATTCCTGCTGAATTCAATCAGTTTGTTGAG 519
||||| |||||||||||| |||||| |||||| | |||||||| |||| ||||||||
Sbjct 910 CGACCAATTGATGGTTCTGTTCCGCCTCGAATTCCCGTTGAATTCAGTCAGCTTGTTGAG 969
Query 520 AAAGCAGTTAAAGAATCACAGTCCCTAGCGGCCTCATCAAATTCCAAGGAGACAAAGGGA 579
|||||| ||||||||||| ||||||||| || | | ||||||| || ||||||||||||
Sbjct 970 AAAGCAATTAAAGAATCAAAGTCCCTAGTTGC-T-A-CAAATTCAAATGAGACAAAGGGA 1026
Query 580 GAAGATGGAATACCA-TTTATGTTACCTGACATCTGTATTGTTAACTTCTACACATCTAC 638
| ||||| ||||||| ||| |||| |||||||| ||| ||||||||||||||||||| ||
Sbjct 1027 GGAGATGAAATACCACTTT-TGTTGCCTGACATATGTGTTGTTAACTTCTACACATCCAC 1085
Query 639 AGGGAGACTTGGTCTCCATCAGG 661
|||| |||||||||||||||||
Sbjct 1086 CGGGAAACTTGGTCTCCATCAGG 1108
Score = 316 bits (171), Expect = 2e-85
Identities = 220/244 (90%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 670 GAGAGCGAAAATTCCATTCGGAAGGGATTACCTGTTGTTTCATTTTCTATTGGAGATTCA 729
|||||| |||| ||| | ||||| ||||| ||| |||| |||||||||||||||||||||
Sbjct 1180 GAGAGCAAAAAGTCCCTCCGGAAAGGATTGCCTATTGTATCATTTTCTATTGGAGATTCA 1239
Query 730 GCCGAGTTCTTGTATGGTGATCAGAGGGATGAAGACAAGGCTGAAACGTTAATCTTGGAG 789
||||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 1240 GCCGAATTCTTGTATGGTGATCAGAAGGATGTTGACAAGGCAGACACGTTAATCTTGGAG 1299
Query 790 TCTGGAGATGTTCTAATATTCGGTGGAAGATCAAGAAAAGTCTTCCATGGCGTCAGATCA 849
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1300 TCTGGAGATGTTCTAATATTCGGTGAAAGATCAAGAAATGTCTTCCATGGCGTCAGATCA 1359
Query 850 ATTTGTAAAGATACTGCCCCCAAGCCTCTTGTTCAGGAAACGAGTCTCCGACCAGGTCGT 909
||| |||| ||||||||||||||| ||||| |||||||||| | ||| | ||||||||||
Sbjct 1360 ATTCGTAA-GATACTGCCCCCAAGGCTCTTCTTCAGGAAACAAATCTTCAACCAGGTCGT 1418
Query 910 CTGA 913
||||
Sbjct 1419 CTGA 1422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5