BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478830
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14170.1 | Symbols: | Plant protein of unknown function (DU... 2658 0.0
> AT3G14170.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr3:4695965-4698120 REVERSE LENGTH=1799
Length=1799
Score = 2658 bits (1439), Expect = 0.0
Identities = 1687/1806 (93%), Gaps = 19/1806 (1%)
Strand=Plus/Plus
Query 1 TTACTTACCTGACATGCAAAGATAGCGAAGATGCTCCACCATCAAGGAACAAAGAATCCA 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTACTTAGCTGACATGCAAAGATAGCGAAGATGCTCCATCATCAAGGAACAAAGAATCCA 60
Query 61 ACCAAAAATCAAAGTAGACACCTTTCTTTATTGGCTCTGTTGTAAAATTC-ATTCTCACA 119
|||||||| | || | | || |||||||||| |||||||||||||||| ||| |||||
Sbjct 61 ACCAAAAA--ACAG-A-A-ACGTTTCTTTATTCTCTCTGTTGTAAAATTCAATT-TCACA 114
Query 120 CTGTTCAGTTTCCAAGAATGGCTTCTCTTACGCCTAGAGTGTTAATCAAGCTT-CTCGAG 178
||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 115 CTGTTCAATTTCCAAGAATGGCTTCTCTTACGCCAAGAGTGTTAATCAAG-TTACTCGAG 173
Query 179 ACGATGAACACCAACATCAAGGTTCGAGGCGAATATAGGTCTGTTCTGTTGCAGGTAATC 238
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 174 ACGATGAACACCAACATCAAGGTACGAGGGGAATATAGGTCTGTTCTATTGCAGGTAATC 233
Query 239 AGCATTGTCCCTGCTTTAGCCGGCGCAGAGCTTTGGCCAAACCAAGGCTTTTTCATCAAA 298
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 234 AGCATTGTCCCTGCTTTAGCTGGCTCGGAGCTTTGGCCAAACCAAGGCTTTTTCATCAAA 293
Query 299 GTGTCAGATTCTTCTCACTCCACATATGTCTCGTTGAGGAACGAAGACAACGAACTTATC 358
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 294 GTCTCAGATTCTTCTCACTCCACATATGTCTCATTGAGCAACGAAGACAACGAACTTATC 353
Query 359 TTGAACAACAAATTGGGATTGGGACAGTTCTTCTACGTTGATAAGCTTGAAGCTGGAACA 418
|||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 354 TTGAACAACAAACTGGGAATAGGACAATTCTTCTACGTTGATAAGCTTGATGCTGGGACA 413
Query 419 CCTGTTCCTGTATTGGTGGGAGTTAGACCGATTTCTGGACGCCATCCTTTTGTAGGAAAT 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 414 CCTGTTCCTGTATTGGTGGGAGTTAGACCGATCTCTGGACGCCATCCTTTTGTAGGAAAT 473
Query 479 CCCAAAGATTTGATGCAAATGTTGGTACCTAGTGAGACAACACCTCTGCAAGAAGAAAAT 538
||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||| ||
Sbjct 474 CCCAAAGATTTGATGCAGATGTTGGTACCAAGTGAGACAACACCTCGGGAAGAAGAATAT 533
Query 539 CACAACCAGAAGAAGAAAGATGGTGCGAGATCAAACATGGTTGAGAATACAAGAAAACAT 598
|||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||
Sbjct 534 CACAACCAGAAGAAGAAAGATGGTGCAAGATCAAACATAGTGGAGAATATAAGAAAACAT 593
Query 599 CAACCTTTTGTAATCAAGGAAGAGAAGACAGGTGTGGCGTCAAGATATATGAAGGGTATT 658
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 594 CAACCTTTTGTAATCAAGGAAGAGAAGACAGGTGTGGCTTCACGTTATATGAAGGGTA-- 651
Query 659 GTTTCAAATTCAAAGGCAAGTGGATCAGACTCGAGTAGTGGCGGTAGCAACAATGAGTGT 718
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 652 -TTTCAAATTCAAAGGCAAGTGGATCAGACTCAAGTAGTGGGGGTAGCAACAATGAGGGT 710
Query 719 GAGACTGGATCGATAATGGTTGCTAAGAAAGCTGGTGGATTGGCTAAGGGGAAACAAAGG 778
|||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||
Sbjct 711 GAGACTGGATCGATAATGGTGGCTAAGAAAGTTGGTGTATTGGCTAAAGGGAAACAAAGG 770
Query 779 GAGCACAAAGATCAGGCACGTCAAGCTAATCCTCCACAATCTCGGCCTGCGACAGCTCCA 838
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 771 GAGCACAAAGATCAGGCACGTCAAGCTGGTCCTTTACAATGTCGGCCTGCGACAGCTCCA 830
Query 839 ACAAAGGCAGAGTCAAAGAAACTCTCTTTGAGCTCCACTGTGAACTACATAAACAGAAAG 898
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 831 ACAAAGGCAGAGCCAAAGAAACTCTCTTTGAGCTCCACTGTGAACTACATAAACAGGAAG 890
Query 899 AGTAATTCTTCTGAGGATGCATCATGGAGCTCTCTGCCTGTTAGTCTATCAAAATTGGGT 958
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGTAATTCTGCTGAGGATGCATCATGGAGCTCTCTGCCTGTTAGTCTATCAAAATTGGGT 950
Query 959 AAAGGAGTGCTGAGAAGAAGAAATTTAGCTGCTCTAATTGCCACAGAAGTGCAAAGAGAG 1018
|||||| |||||||||| ||||||||||||||||| || ||| |||||||||||||||||
Sbjct 951 AAAGGAATGCTGAGAAGGAGAAATTTAGCTGCTCTCATAGCCGCAGAAGTGCAAAGAGAG 1010
Query 1019 GCATTGGTTGCTTCACATCTTATCAAATGCATCAGTATGTTTGCTGACCTCAGCTCAAAT 1078
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1011 GCATTGGCTGCTTCACATCTCATCAAATGCATCAGTATGTTTGCTGAACTCAGCTCAAAT 1070
Query 1079 GCTTCACCAAAGAATCCACATACCTCTCTCAGAAACTTCTTCACCCTCCAGAGTATCCTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCTTCACCAAAGAATCCACATACCTCTCTCAGAAACTTCTTCACCCTCCAGAGTATCCTT 1130
Query 1139 GACCAAGCACATGTTACAGTTGCAGTATCGAAAGATAAATCATTCCAGCCAGTGAATATT 1198
||||||| ||| |||||||||| || ||||||||||||||||||||| || |||||||||
Sbjct 1131 GACCAAGTACAGGTTACAGTTGTAGCATCGAAAGATAAATCATTCCAACCGGTGAATATT 1190
Query 1199 CATTCATTATGGACGGAACCTGAAAAGTTAAGCaaaaaaaCTAGCCTAGCTTCAAGCAGA 1258
||||| ||||||| ||||||||||||||| ||||||||| |||| ||| |||||||||||
Sbjct 1191 CATTCGTTATGGATGGAACCTGAAAAGTTGAGCAAAAAAGCTAGTCTATCTTCAAGCAGA 1250
Query 1259 ACCACAACAAAGTCTTCAAAAACTCTAACAGAAGCCGAAAAGCTAGAATGGGTTAAGGGA 1318
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GCCACAATGAAGCCTTCAAAAGCTCTAACAGAAGCCGAAAAGCTAGAATGGGTTAAGGGA 1310
Query 1319 AATGGCACAGAAGAGATAAAAGAACTGAGAAGCACTTTGAAACGAGAAACCAGAAGCTGG 1378
|||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||
Sbjct 1311 AATGGCACAGAAGAAATAAAAGAACTGACAAACACTTTGAAACGAGAAACAAGAAGCTGG 1370
Query 1379 TTTTTGAAATTCTTGGAAGATGCATTAGATACTGGATTACATGCTAGTGTTCCGGAGAAG 1438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1371 TTTTTGAAATTCTTGGAAGATGCATTAGATACTGGATTACATGCTACTGTTCCGGAGAAG 1430
Query 1439 AAAGGAAAAACCAAAGGAGCGCGACTAGCGGAACCAGATAATCATATTGCTGAGACATTA 1498
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1431 AAAGGAAAAACCAAAGGAGCGCGACTAGCGGAACCAGATAATCATATTGCCGAGACTTTA 1490
Query 1499 TCCCAACTTAAGCAAGCAAACGAATGGCTGGAAAAAGTTAAAAATGATAATCTCTCTAGT 1558
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1491 TCCCAACTTAAGCAAGCAAACGAATGGCTGGAAAAAGTTAAAAATGACAATCTCTCTAGT 1550
Query 1559 GATAATTCTTTGTTAGAGAATATAGAACGATTGAAGAAGAAAATATACTCTTGCTTGCTA 1618
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1551 GATAATTCTTTGTTAGAGAATATAGAACGATTGAAGAAGAAAATATATTCTTGCTTGCTA 1610
Query 1619 CTTTATGTAGATTCAGCTGCATCAGCTATTGGAGTATAGGCAACCTCGTGATGGACCATA 1678
|||||||| ||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 1611 CTTTATGTGGATTCAGCTGCATCAGCTATTGGAGTATA---A-CCACGTGATGGAAAATA 1666
Query 1679 CAACCGATATGGTGTGCTAAGCTGCCTAGCAACAATGAAATAATTTTACACATCAAACTA 1738
|||| ||||||||||| |||| ||||||||| ||||||| ||| ||||||||||||||||
Sbjct 1667 CAACTGATATGGTGTGATAAGTTGCCTAGCAGCAATGAATTAACTTTACACATCAAACTA 1726
Query 1739 GAACATAAGCTATACTA--TTGTGTGCGCTAATTTATTGTGTATAATACAAAAAGAAATC 1796
||| |||||||||| || ||||||||||| |||||||||||||||| ||||||||| |
Sbjct 1727 GAAGATAAGCTATA-TACATTGTGTGCGCTTATTTATTGTGTATAATTGAAAAAGAAACC 1785
Query 1797 AGACAT 1802
||||||
Sbjct 1786 AGACAT 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89156167920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5