BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478832
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14180.1 | Symbols: | sequence-specific DNA binding transcr... 2743 0.0
> AT3G14180.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr3:4707113-4708848 REVERSE LENGTH=1736
Length=1736
Score = 2743 bits (1485), Expect = 0.0
Identities = 1663/1747 (95%), Gaps = 20/1747 (1%)
Strand=Plus/Plus
Query 1 AAACCGAGCCGGCAACTTTACCGGTGACGGAATCTTACCTCTGACCTACCAATCACGTTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAACCGAGCCGGCAACTTTACCGGTGACGGAATCTTACCTCTGACCTACCAATCACGTCA 60
Query 61 TTCCACGTCAACTCCCCGTATCTTCTCACGTTCTTCCACGTGT-CTCTCCTACTCACCGA 119
|||||||||| |||||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 61 TTCCACGTCATCTCCCCGTATCTTCTCACGTCCTTCCACGTGTCCCCT-CTACTCACCGA 119
Query 120 CGCCGTCTCCTTCCCGTTTACCCCCCTCCCGAACAGAATATTAACCCAAACCCTAACCCT 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGCCGTCTCCTTCCCGTTTA--CCCCTCCCGAACAGAATATTAACCCAAACCCTAACCCT 177
Query 180 ATCT-CCTCTTTCACGAGCTTCTGACTCAGATCCGGCGATATCGAATTCCATGGAGGACG 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCTCCCTCTTTCACGAGCTTCTGACTCAGATCCGGCGATATCGAATTCCATGGAGGACG 237
Query 239 ACGAAGACATCCGATCTCAGGGTTCCGATTCACCTGATCCGTCTTCTTCGCCGCCGGCGG 298
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 238 ATGAAGACATCCGATCTCAGGGTTCCGATTCACCTGATCCGTCTTCCTCCCCGCCGGCGG 297
Query 299 GACGAATCACGGTTACGGTGGCTTCGGCAGGTCCGCCTTCTTATTCTCTGACTCCTCCGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GACGAATCACGGTTACGGTGGCTTCGGCAGGTCCGCCTTCTTATTCTCTGACTCCTCCGG 357
Query 359 CTAGTTCGTCGCAGAAGGATCCGGATGCGTTGGCTCTGGCGCTGCTTCCGATTCACGCCA 418
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 358 GTAATTCGTCGCAGAAGGATCCGGATGCGTTGGCTCTGGCGCTGCTTCCGATTCAGGCCA 417
Query 419 GCGGTGGAGGGAATAGCAGCAGTGGGAGACCAACCGGTGGCGGCGGGAGGGAGGATTGTT 478
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GCGGTGGAGGGAATAACAGCAGTGGGAGACCAACCGGCGGCGGCGGGAGGGAGGATTGTT 477
Query 479 GGAGCGAAGGGGCTACGGCTGTGTTGATTGATGCGTGGGGTGAGAGATACTTGGAGCTTA 538
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAGCGAAGCAGCTACGGCTGTGTTGATTGATGCGTGGGGTGAGAGATACTTGGAGCTTA 537
Query 539 GCAGAGGGAATCTGAAGCAGAAGCACTGGAAAGAGGTGGCTGAGATCGTGAGCAGCAGAG 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GCAGAGGGAATCTGAAGCAGAAGCACTGGAAAGAGGTGGCTGAGATTGTGAGCAGCAGAG 597
Query 599 AGGATTATGGTAAAATTCCCAAAACTGATATACAGTGTAAGAATAGGATCGATACGGTGA 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGGATTACGGTAAAATTCCCAAAACTGATATACAGTGTAAGAATAGGATCGATACGGTGA 657
Query 659 AGAAGAAGTATAAACAGGAGAAGGTGAGAATCGCTACCGGTGGTGGCCGTAGCAGATGGG 718
|||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 658 AGAAGAAGTATAAACAAGAGAAGGTGAGAATCGCTAACGGCGGTGGCCGTAGCAGATGGG 717
Query 719 TGTTCTTCGACAAACTTGACCGTCTGATTGGATCAACGGCGAAGATCCCGACGGCAACTC 778
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTTCTTCGACAAGCTTGACCGTCTGATTGGATCAACGGCGAAGATCCCGACGGCAACTT 777
Query 779 CTGGAATCAGCAGTGGTGGAGGTCCTGTAGGAGGATTGCATAAGATTCCTATGGGTATTC 838
||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 778 CTGGAGTCAGC---------GGTCCTGTCGGAGGATTGCATAAGATTCCTATGGGTATTC 828
Query 839 CCATGGGAAATCGTTCGAATCTGTACCACCAGCAAGCTAAGGCTGGAACACCGCCTTTCA 898
| ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 829 CAATGGGAAGTCGTTCGAATCTGTACCATCAGCAAGCTAAGGCTGCAACACCGCCTTTCA 888
Query 899 ATAATATTGACC-GTCTAATTGGAGCTACGGCTAGGGTCTCAGCTGCTTCGTTCGGTGGC 957
||||| |||||| || ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 889 ATAATCTTGACCGGT-TAATTGGAGCTACGGCTAGAGTCTCAGCTGCTTCTTTCGGTGGC 947
Query 958 AGTGGTGGAGGAGGCGGAGGAGGATCTGTTAATGTACCTATGGGAATTCCGATGAGTAGC 1017
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 948 AGTGGTGGAGGAGGCGGAGGAGGATCTGTCAATGTACCTATGGGAATTCCGATGAGTAGC 1007
Query 1018 CGTTCAACTCCGTTTGGACAGCAAGGTAGGACGCTGCCACAGCAAGGTAGGACGCTGCCA 1077
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1008 CGTTCAGCTCCGTTTGGACAGCAAGGGAGGACTCTGCCACAGCAAGGTAGGACACTGCCA 1067
Query 1078 CAGCAACAGCAGCAAGGGATGATGGTGAAAAAGTGTAGTGAGTCGAAACGCTGGCGTTTC 1137
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1068 CAGCAACAGCAGCAAGGGATGATGGTGAAAAGGTGTAGTGAGTCGAAACGCTGGCGTTTC 1127
Query 1138 AGGAAGAGGAATGCCTCTGATTCAGACTCGGAATCTGAAGCAGCAATGTCAGATGATTCC 1197
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AGGAAGAGGAACGCTTCTGATTCAGACTCGGAATCTGAAGCAGCAATGTCAGATGATTCC 1187
Query 1198 GGTGACAGTTTACCTCCTCCTCCTCTTTCGAAGAGGTTGAAGACAGAGGAGAAGAAGAAG 1257
|||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1188 GGTGACAGTTTACCACCTCCTCCTCTGTCGAAGAGGATGAAGACGGAGGAGAAGAAGAAG 1247
Query 1258 CAAGATGGTGATGGAGTGGGAAATAAATGGAGGGAGTTAACTCGGGCAATCATGAGATTT 1317
|||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 1248 CAAGATGGTGATGGAGTGGGGAACAAATGGAGGGAGCTGACTCGGGCAATCATGAGATTC 1307
Query 1318 GGTGAAGCTTATGAGCAAACAGAGAATGCGAAACTGCAACAGGTGGTTGAGATGGAGAAA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GGTGAAGCTTATGAGCAAACAGAGAATGCGAAACTGCAACAGGTGGTTGAGATGGAGAAA 1367
Query 1378 GAGAGGATGAAGTTCTTGAAGGAGCTGGAGTTGCAGAGAATGCAGTTCTTTGTTAAGACC 1437
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1368 GAGAGGATGAAGTTCTTGAAGGAGCTTGAGTTGCAGAGAATGCAGTTCTTTGTGAAGACT 1427
Query 1438 CAAGTGGAGATATCGCAGCTTAAGCAGCAACATGGGAGGAGAATGGGAAACACCAGTAAT 1497
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CAATTGGAGATATCACAACTTAAGCAGCAACATGGGAGGAGAATGGGAAACACCAGTAAT 1487
Query 1498 GATCATCA-CA--GCCGCAAGAACAACATCAATGTGATTGTCAACAACAACAACGATTTG 1554
|||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1488 GATCATCATCACAGCCGCAAGAACAACATCAATGCGATTGTCAACAACAACAACGATTTG 1547
Query 1555 GGTAATAACTAGAGTTTAGTGATGCAGGGTCGTAATTGATATATTTTAGATTTGAGTCTT 1614
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1548 GGTAATAACTAGAATTTAGTGATGCAGTGTCGTAATTGATATATTTTAGATTTGAGTCTT 1607
Query 1615 GAATTGTTGAAAGAGAGAACTGAAACTTATCTAGGCTTCATGCGTGTATTAATATTTTGC 1674
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1608 TAATTGTTGAAAGAGA-AACTGAAACTTATCTAGGCTTCATGAGTGTATTAATATTTTGC 1666
Query 1675 ATATCTTTGTTAACTTTTGTCATATGGAACAGATTTAACATCACTAGAATGCATGAGATC 1734
|||||||| |||||||| ||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 1667 ATATCTTTCTTAACTTTGGTCATATGGAACAGATTTAACTTCACTAGATTGCCTGAGATC 1726
Query 1735 ATCCTGC 1741
|| ||||
Sbjct 1727 ATTCTGC 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86093934675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5