BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478834
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14200.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1343 0.0
> AT3G14200.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:4712574-4714653 REVERSE LENGTH=1292
Length=1292
Score = 1343 bits (727), Expect = 0.0
Identities = 937/1034 (91%), Gaps = 31/1034 (3%)
Strand=Plus/Plus
Query 1 TATACACACACCAAACATCCCAAGTTCGTTGGCTCTGTTTTTGGGTGTTG-AAATTCGTC 59
|||||||||||||||||||||||||| |||||||||||||||| | | || ||| |||||
Sbjct 165 TATACACACACCAAACATCCCAAGTTTGTTGGCTCTGTTTTTGAGCGGTGAAAACTCGTC 224
Query 60 GAAAAAACGAG-TTTTTCTT-ATTGGGTTTCTC----TTTTTGTTGACCTAG-AGGAGAA 112
| ||||||||| ||||| || |||||||||||| |||||||||| || | |||||||
Sbjct 225 GGAAAAACGAGTTTTTTTTTAATTGGGTTTCTCTTTTTTTTTGTTGATCTGGAAGGAGAA 284
Query 113 AGTTAGCGATGGCGTCCAATAATAGCGAGAAAATCAACGATAATTTGTACACTGTTCTGG 172
| |||||||||||||||| |||||||||||| |||||||| ||| ||||| |||||||||
Sbjct 285 AATTAGCGATGGCGTCCAGTAATAGCGAGAAGATCAACGAGAATCTGTACGCTGTTCTGG 344
Query 173 GTTTGAAGAAGGAATGTTCGT-CGACGGAGCTCCGTACTGCTTATAAGAAACTCGCTCTT 231
||||||||||||||||||| | ||||||||||||| ||||||||||||| || |||||
Sbjct 345 GTTTGAAGAAGGAATGTTC-TAAGACGGAGCTCCGTTCTGCTTATAAGAAGCTTGCTCTC 403
Query 232 AGATGGCATCCAGATCGTTGTCCATCAATGGAGTTTGTAGAAGAAGCAAAGAAGAAGTTT 291
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 404 AGATGGCATCCAGATCGTTGTTCGTCAATGGAGTTTGTAGAAGAAGCAAAGAAGAAATTT 463
Query 292 CAGGCAATCCAAGAAGCCTACTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CAGGCAATCCAAGAAGCCTACTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGAT 523
Query 352 GTTGGAGCTTATAATACTGATGATGATGA---CCAAAACGGAATGGGAGATTTTTTGAAC 408
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 524 GTTGGTGCTTATAATACTGATGATGATGATGACCAAAACGGAATGGGAGATTTCTTGAAC 583
Query 409 GAAATGGCGACTATGATGAATCAATCCAAGCCTAATGAGAATAACACAGGGGACAGTTTT 468
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 584 GAAATGGCGACTATGATGAATCAATCCAAGCCTAGTGATAATAACACAGGGGACAGTTTT 643
Query 469 GAACAATTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACGCTGCAGCATTCTCATCA 528
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 644 GAACAACTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACGCTGCAGCATTCCCATCA 703
Query 529 TCATCGTCTTGCTCCACTTCAACATT-CACTTCCTCTTGTAGTTTTGTATTTGATACAAA 587
|||||||| ||||||||||||| ||| |||||| ||| ||||||||||||| ||||||||
Sbjct 704 TCATCGTCCTGCTCCACTTCAA-ATTTCACTTCATCTCGTAGTTTTGTATTCGATACAAA 762
Query 588 TGCTCAGCGGTCATCAACGTTTGAGACACGTTCAATGGGGATTAATAATGATCCTTTCCG 647
| ||||||||||||| |||||| |||| |||| |||||||| ||||||||||||||| |
Sbjct 763 TTCTCAGCGGTCATCTTCGTTTGCGACAAGTTCGATGGGGATGAATAATGATCCTTTCGG 822
Query 648 ATATGATCCGAGAGCTCATTCCTTCTCTTTAGGGGTGGACCATCAGCAAGAGTTCAAGAA 707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATATGACCCGAGAGCTCATTCCTTCTCTTTAGGGGTGGACCATCAGCAAGAGTTCAAGAA 882
Query 708 AGGGAAAAACACTGGCGGAAGAAGAAACAGGAGGAAGAACAATGCT--A--G-C----CA 758
||||||||||| ||||||||||||||||||||| |||||||||| | | | | ||
Sbjct 883 AGGGAAAAACAATGGCGGAAGAAGAAACAGGAGAAAGAACAATGTTCCATCGGCTGGTCA 942
Query 759 TGAAACGTCGTCGTCAAACAACTATGGAGTGCCCACTTCATAGTCACTTCACACCATATT 818
||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 943 CGAAACGTCGTCGTCAAACAACTATGGAGTCCCCACCTCATAGCCACTTCACACCATATT 1002
Query 819 TTTT-GCTAACTCATGTCC--ACATTTGTCGACTAGTCACAGACAAGATGAGTGGTTGTT 875
|||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1003 TTTTTGCTAACTCATCTCCCCACATTTGTCGACTAGTCGCAGACAAGATGAGTGGTTGTT 1062
Query 876 GTCTTCTCAACAAGGA-TGCATCGAAACTCAAAGGGTCGTCGTTTTGTAAA-CTACCCAC 933
|||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1063 GTCTTCTCAATGAGGAATACATCGAAACTCAAAGGGTCGTCGTTTTGTAAAACTACCCAC 1122
Query 934 CTCCTCCTCTCGAAGCTTCTTCTTTTTGTTTCTCTCTGCTT-TATTTTGTCATTGAATTG 992
||||| |||| ||| |||||| ||||| ||| | | | || | | |||||||||||||
Sbjct 1123 CTCCTTCTCTAGAATCTTCTTATTTTTATTTTTGTTT-CTCCTGTGCTGTCATTGAATTG 1181
Query 993 TTGTCTCCTAAAAG 1006
||||||||||||||
Sbjct 1182 TTGTCTCCTAAAAG 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5