BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478837
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14225.1 | Symbols: GLIP4 | GDSL-motif lipase 4 | chr3:47346... 1751 0.0
AT5G40990.1 | Symbols: GLIP1 | GDSL lipase 1 | chr5:16418920-16... 420 2e-116
> AT3G14225.1 | Symbols: GLIP4 | GDSL-motif lipase 4 | chr3:4734616-4735993
REVERSE LENGTH=1134
Length=1134
Score = 1751 bits (948), Expect = 0.0
Identities = 1074/1136 (95%), Gaps = 4/1136 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGTTCTAGATTTAATTCGATCATCATCATCATATTCATTTGCACAATAAGTTTA 60
||||| ||| ||||||||||||| |||||||||||| ||||||| ||||| ||||| |||
Sbjct 1 ATGGCAAGTCCTAGATTTAATTCCATCATCATCATCTTATTCATCTGCACTATAAGCTTA 60
Query 61 TCAATCGGCTCGATTTCTTGCAAAGAAGATCTTATAACGAACCAAGCCGCCTTGTTCGTT 120
|| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 61 TCGATCGTCTCGATTTCTTGCAAAGAAGATCTTAAAACGAACCAAGCCGCCTTGTTTGCG 120
Query 121 TTTGGAGATTCGCTGTTTGAAGCCGGAAACAATAATTACTTCGACTCTGTCTCAAGTTTC 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TTTGGAGATTCTCTGTTTGAAGCCGGAAACAATAATTACTTCGACTCTATCTCAAGTTTC 180
Query 181 CGATCGAATTTCTGGCCATATGGCAAAACAACGTTCAAGTTTCCAACGGGACGGGTTTCG 240
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 181 CGATCAAATTTCTGGCCGTATGGTAAAACAACGTTCAAGTTTCCAACGGGACGGGTCTCT 240
Query 241 GATGGACGAATAATGATAGATTTTATTGCTGATTACGCATGGTTACCGTTGATCCCGCCA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GATGGACGAATAATGATAGATTTTATTGCTGAATACGCATGGTTACCGTTGATCCCGCCA 300
Query 301 AATCTACAACCTGGTTACAGTAACAGTCAATTAACCTATGGACTTAATTTCGCTACTACA 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 AATCTACAACCTGGTTACAGTAACAGTCAACTAACCTATGGACTTAATTTCGCTACTACA 360
Query 361 GCCGCCGGAGTTTTCGCCGGAACGTTTCCGGGATCGGTAACTAATCTTTCGAAAGACTTG 420
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 361 GCCGCCGGAGTTTTCGCCGGAACTTTTCCCGGATCGGTAACTAATCTCTCGAAAGATTTG 420
Query 421 GGAACACAGTTAAACAACTTCAAGAACGTGGAGAAAACGTTGAGATCTAATTTAGGAGAT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GGAACACAGTTAAACAACTTCAAGAACGTGGAGAAAACGTTGAGGTCTAATTTAGGAGAT 480
Query 481 GCAGAGGCGAGAAGAGTAATCTCGAAAGCTGTTTATCTTTTTCACATCGGAGCAAATGAC 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GCAGAGGCGAGGAGAGTAATCTCGAAAGCTGTTTATCTTTTTCACATAGGAGCAAATGAC 540
Query 541 TATCAATACCCATTCTTTGCCAATACCTCAACTTTTAGTAACACTACCAAAGAAAGATTG 600
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCAATACCCATTCTTTGCAAATACCTCAACTTTTAGTAACACTACCAAAGAAAGATTC 600
Query 601 GTCGAGTTCGTCATTC-GTAACACAACCACCGTCATCGAGGAATTGTATAAATTAGGAGC 659
|||| ||||||| || |||||||||| || || |||||||| |||||||||||||||||
Sbjct 601 ATCGATTTCGTCA-TCGGTAACACAACGACTGTAATCGAGGAGTTGTATAAATTAGGAGC 659
Query 660 AAGGAAATTTGGATTCTTGAGCTTGGGTCCATTTGGCTGTACACCAAGCGCATCGATAAT 719
||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 660 AAGGAAATTCGGATTCTTGAGCTTGGGTCCATTTGGTTGTACACCAAGCGCATTGATAAT 719
Query 720 AGACCGGGCAAAGATAGGATCTTGTTTCGAGCCGGT-AGCAGAGCTGATCAATCTCCATA 778
| || | ||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 720 AAACAGTACAAAGATAGGATCTTGTTTCGAGCCAGTCA-CAGAGCTGATCAATCTCCATA 778
Query 779 ACCAAGAATTCCCAAAAGTCTTGAGGCGTCTAGAGCGCCGGTTATCCGGATTCAAATACG 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCAAGAATTTCCAAAAGTCTTGAGGCGTCTAGAGCGCCGGTTATCCGGATTCAAATACG 838
Query 839 CTCTTCACGACTTTCACACTTCTTTATCCCAAAGGATCAACAACCCTTCTCGATACGGTT 898
||||||| ||||||||||||||| |||||||||| |||||||| |||||||| |||||||
Sbjct 839 CTCTTCATGACTTTCACACTTCTCTATCCCAAAGAATCAACAATCCTTCTCGTTACGGTT 898
Query 899 TCAAGGAAGGGAAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTG 958
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTAAGGAAGGGGAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTG 958
Query 959 GATTCCGAAATGGACCATCGCAAGGTTACGAGCTATGCGAAAACGCTGATGATTACGTCT 1018
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 GATTCCGAAATGGACCATCGCAAGGTTACAAGCTATGCGAAAACGCTGATGATTACGTCT 1018
Query 1019 TCTTTGATCCCTCTCATTTGTCGGAAAAGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078
|||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 TCTTTGATCCTTCTCATTTGACGGAAACGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078
Query 1079 GCGGACCGCCTAATGTCACTGCACCTTACAATCTTAAAACATTGTTCAGACTCTAG 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCGGACCACCTAATGTCACTGCACCTTACAATCTTAAAACATTGTTCAGACTCTAG 1134
> AT5G40990.1 | Symbols: GLIP1 | GDSL lipase 1 | chr5:16418920-16420400
FORWARD LENGTH=1125
Length=1125
Score = 420 bits (227), Expect = 2e-116
Identities = 795/1060 (75%), Gaps = 76/1060 (7%)
Strand=Plus/Plus
Query 89 ATCTTATAACGAACCAAGCCGCCT-TGTTCGTTTTTGGAGATTC-GCTGTTTGAAGCCGG 146
||||| |||| |||||| ||| || ||||||| ||||||||||| | |||| || || ||
Sbjct 89 ATCTTGTAACAAACCAATCCG-CTCTGTTCGTGTTTGGAGATTCTG-TGTTCGATGCTGG 146
Query 147 AAACAATAATTACTTCGACT-CTGTCTCAAGTTTCCGATCGAATTTCTGGCCATATGG-C 204
||| || || ||| |||| | || |||| ||| |||| || |||| |||||| ||||| |
Sbjct 147 AAATAACAACTACATCGA-TACTCTCTCTAGTGTCCGGTCTAATTACTGGCCGTATGGTC 205
Query 205 AAAACAACGTTCAAGTTTCCAACGGGACGGGTTTCGGATGGACGAAT-AATGATAGATTT 263
||||||| ||||| | || || ||| | || || || ||||| | | | | |||||
Sbjct 206 -AAACAACATTCAAATCCCCTACTGGAAGAGTCTCTGACGGACGTTTGATTCCT-GATTT 263
Query 264 TATTGCTGATTACGCATGGTTACCGTTGATCCCGCCAAATCTACAACCTGGTT--ACAGT 321
|| || || |||||||||||||||||||||||||||||| ||||||| || || ||
Sbjct 264 CATCGCGGAGTACGCATGGTTACCGTTGATCCCGCCAAATTTACAACC--ATTCAACGGT 321
Query 322 AACAGTCAATTAACCTATGGACTTAA-TTTCGC-TACTA-CAGCCGCCGGAGTTTTCGCC 378
||||| ||||| ||||||| | || ||| || | | | | |||||||| ||| | |
Sbjct 322 AACAGCCAATTTGCCTATGGGGTAAACTTT-GCGT-C-AGGTGGCGCCGGAGCTTTAGTC 378
Query 379 GGAACGTTTCCGGGATCGGTAACTAATCTTTCGAAAGACTTGGGAACACAGTTAAACAAC 438
||||| ||| | |||| ||| | ||| ||| || ||||||| |||||||||
Sbjct 379 GGAACCTTTTCTGGATTGGTGA-TAA-ATTT-----GA-----GAACACAATTAAACAAC 426
Query 439 TTCAAGAACG-TGGAGAAAACGTTGAGATCTAATTTAGGAGATGCAGAGGCGAGAAGA-- 495
||||| || | || || ||| ||| || ||||| ||||||||||| |||| | |||||
Sbjct 427 TTCAAAAAGGTTGAAG-AAATGTTAAGGTCTAAGTTAGGAGATGCTGAGG-G-GAAGAGG 483
Query 496 GTAATCTCGAA-AGCTGTTTATCTT-TTTCACATCGGAGC-AAATGACTATCAATACCCA 552
|| ||||| || |||||||||| || ||||| || ||| | || ||||||||||| |||
Sbjct 484 GTTATCTC-AAGAGCTGTTTAT-TTGTTTCATATTGGA-CTCAACGACTATCAATATCCA 540
Query 553 TTCTTTGCCAATACCT-C-AACTTTTAGTAACACTACCAAAGA-AAGATTGGTCGAGTTC 609
||| | | ||| | | | | ||| | | || | |||| || || || || || ||
Sbjct 541 TTCACTACAAATTCTTCCTTA-TTTCAAT-CCATTTCCAACGAGAA-ATACGTAGA-TT- 595
Query 610 GTCAT-TC-GTAACACAACCA-CCGTCATCGAGGAATTGTATAAAT-TAGGAGCAAGGAA 665
| | || |||||| | || ||| || ||||| ||||| ||| | |||| ||||||
Sbjct 596 ATGTTGTCGGTAACATGA-CAGACGTTTTCAAGGAAGTGTAT-AATCTTGGAGGAAGGAA 653
Query 666 ATTTGGATTCTTGAGCTTGGGTCCATTTGGCTGTACACCAAG-CGCATCGATAATAGACC 724
|||||| |||||| | ||| || | | ||| |||| || | ||| | | |||||||
Sbjct 654 GTTTGGAATCTTGAACACGGGACCGTACGATTGTGCACC-AGCCTCATTGGTTATAGACC 712
Query 725 GGGCAAAGATAGGATCTTGTTTCGAGCCGGT-AGCAGAGCTGATCAATCTCCATAACCAA 783
|||| ||| ||||||||||| ||||||| | | || ||||||||| | || || | |
Sbjct 713 AAACAAAAATAAGATCTTGTTTCCAGCCGGTCA-CTGAACTGATCAATATGCACAA-CGA 770
Query 784 GAA--TTCCCAAAAGTCTTGAGGCGTCTAGAGCGCCG-GTTATCCGGATTCAAATACGCT 840
||| ||| || || ||||| || ||| | | | |||||||||||||||||||
Sbjct 771 GAAGCTTCTGAATGGT-TTGAGACGGCTAAATC-ATGAACTATCCGGATTCAAATACGCC 828
Query 841 CTTCACGACTTTCACACTTCTTTATCCCAAAGGATCAACAACCCTTCTCGATACGGTTTC 900
|||||||||| ||||||||| |||| ||||||| ||| | ||||| ||| || |||
Sbjct 829 CTTCACGACTATCACACTTCCCTATCGGAAAGGATGAACGATCCTTCAAAATATGGGTTC 888
Query 901 AAGGAAGGGAAGATGGCATGTTGCGGGAGTGGGCCGTTGAGGGGAATCAATACATGTGGA 960
||||| ||||||| ||||||||||| || || || ||||| ||||||||||| ||||||
Sbjct 889 AAGGAGGGGAAGAAAGCATGTTGCGGAAGCGGACCATTGAGAGGAATCAATACGTGTGGA 948
Query 961 TTCCGAAAT-GGACCATCGCAAGGTTACGAGCTATGCGAAAACGCTGA-TGATTACGTCT 1018
||| ||| |||| |||||| |||||||| |||| ||||||| | | || || | |
Sbjct 949 GGCCG-AATGGGACTGTCGCAAAGTTACGAGTTATGTGAAAACG-TTACAGACTATTTGT 1006
Query 1019 TCTTTGATCCCTCTCATTTGTCGGAAAAGGCTCATCAACAGATCGCTGAGCTGATTTGGA 1078
|||||||||| | ||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1007 TCTTTGATCCTTTTCATTTGACGGAAAAGGCTAATCGACAGATCGCTGAGCTGATTTGGA 1066
Query 1079 GCGGACCG-CCTA-ATGTCACTGCACCTTACAATCTTAAA 1116
||||||| || | || | |||| ||| || ||||| |||
Sbjct 1067 GCGGACCTACCAACAT-T-ACTGGACCCTATAATCTCAAA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5