BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478841
Length=2602
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14240.1 | Symbols: | Subtilase family protein | chr3:47414... 3989 0.0
> AT3G14240.1 | Symbols: | Subtilase family protein | chr3:4741473-4744117
REVERSE LENGTH=2645
Length=2645
Score = 3989 bits (2160), Expect = 0.0
Identities = 2478/2627 (94%), Gaps = 39/2627 (1%)
Strand=Plus/Plus
Query 1 ACACACTAGGGAAACCACAG-T-TC-TC--TCCTCTCTTTCTCCGGTTCTGTAGCAATGT 55
|||||||||||||||||||| | || || ||||||||||||||| ||||||||||||||
Sbjct 1 ACACACTAGGGAAACCACAGTTCTCTTCTATCCTCTCTTTCTCCGCTTCTGTAGCAATGT 60
Query 56 CAATGTGGTACCCTCTACcttcttcttcttcttcttcCACTCACTAACCAAATCTAGAAT 115
||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 61 CAATGTGGTACCCTCTACCTTCTTCTTCTTC--C-TCCACTCACTAACCAAATCCAGAAT 117
Query 116 ---C-----------AA--CCTAACTTTCTCCGTCAATGGctttcttcttcttctacttt 159
| || |||||||||||||||| ||||| | |||||||||||||||
Sbjct 118 CAACAATAATAGAAAAAGCCCTAACTTTCTCCGTCGATGGC--T-TTCTTCTTCTACTTT 174
Query 160 ttcttcctcttgactctttcttctccgtcttcttcttcttcctcttcAAACTCCTTGACT 219
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 175 TTCTTCCTCTTGACTCTTTCTTCTCCTTCTTCTTCTGCTTCCTCTTCAAACTCCTTGACT 234
Query 220 TACATCGTCCACGTCGACCACGAAGCTAAACCTTCAATCTTCCCCACTCATCGTCACTGG 279
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 235 TACATCGTCCACGTCGACCACGAAGCTAAACCCTCAATCTTCCCCACTCATTTTCACTGG 294
Query 280 TACACTTCCTCCCTTGCCTCACTCACATCTTCTCCTCCCTCTATTATCCAAACATACGAC 339
||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 295 TACACTTCCTCTCTTGCCTCACTCACCTCTTCTCCTCCCTCCATTATCCACACATACGAC 354
Query 340 ACCGTTTTCCATGGCTTCTCCGCTAGACTCACTTCACAAGACGCTAGCCACCTCTTAGAC 399
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 355 ACCGTTTTCCATGGCTTCTCCGCTAGACTCACTTCACAAGACGCTAGTCAACTCTTAGAC 414
Query 400 CATCCTCATGTCATCTCTGTAATCCCAGAGCAAGTCCGTCACTTGCACACCACTCGTTCC 459
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 415 CATCCTCATGTCATCTCTGTTATCCCGGAACAAGTCCGTCACTTGCACACCACTCGTTCC 474
Query 460 CCTGAGTTTCTTGGTCTTAGGTCCACCGACAAAGCGGGTCTACTTGAAGAATCCGATTTC 519
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 475 CCTGAGTTTCTTGGTCTTAGGTCCACCGACAAAGCGGGTCTACTCGAAGAGTCTGATTTC 534
Query 520 GGGTCGGATCTTGTTATCGGAGTTATCGATACTGGTATTTGGCCTGAAAGACCTAGCTTT 579
||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 535 GGGTCGGATCTAGTTATCGGAGTTATCGATACTGGTGTTTGGCCCGAAAGACCTAGCTTT 594
Query 580 GATGACCGTGGTCTTGGTCCTGTTCCTATTAAATGGAAAGGCCAATGTATCGCTTCCCAA 639
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 GATGACCGTGGTCTTGGTCCTGTTCCCATTAAATGGAAAGGCCAATGTATCGCTTCCCAA 654
Query 640 GATTTTCCGGAGTCGGCTTGTAACCGTAAACTCGTCGGAGCTAGATTCTTCTGCGGTGGT 699
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GATTTTCCGGAGTCTGCTTGTAACCGTAAACTCGTCGGAGCTAGATTCTTCTGCGGTGGG 714
Query 700 TATGAAGCAACCAACGGGAAAATGAATGAAACGACGGAGTTTCGTTCTCCGCGTGACTCT 759
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 715 TATGAAGCAACCAACGGGAAAATGAATGAAACGACTGAGTTTCGCTCTCCGCGTGACTCC 774
Query 760 GATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCGTTACGTTTTTCCGGCGTCA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GATGGACATGGGACTCACACAGCTTCAATCTCCGCCGGCCGTTACGTTTTTCCGGCGTCA 834
Query 820 ACTCTAGGCTACGCTCGCGGCGTCGCTGCTGGGATGGCTCCGAAAGCTAGACTCGCCGCT 879
||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 ACTCTCGGCTACGCTCACGGCGTCGCTGCTGGGATGGCTCCAAAAGCTAGACTCGCCGCT 894
Query 880 TACAAAGTTTGTTGGAACTCCGGTTGTTACGACTCCGATATCCTAGCCGCTTTCGACACC 939
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 895 TACAAAGTCTGTTGGAACTCCGGTTGTTACGACTCCGATATCTTAGCCGCTTTCGACACC 954
Query 940 GCCGTTGCCGACGGCGTCGATGTTATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTAT 999
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 GCCGTTGCCGACGGTGTCGATGTCATCTCTCTCTCCGTTGGAGGCGTCGTGGTTCCTTAT 1014
Query 1000 TACCTCGACGCTATCGCCATTGGAGCTTTCGGAGCTATTGACAGAGGAATATTCGTCTCT 1059
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1015 TACCTAGACGCTATCGCTATTGGAGCTTTTGGAGCTATTGACAGAGGCATATTCGTCTCT 1074
Query 1060 GCTTCCGCCGGAAACGGAGGTCCCGGTGCTTTAACGGTGACGAATGTTGCTCCATGGATG 1119
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1075 GCTTCCGCCGGTAACGGAGGTCCCGGTGCTTTAACGGTGACAAATGTTGCTCCGTGGATG 1134
Query 1120 ACAACAGTCGGAGCAGGAACAATCGATAGGGATTTTCCGGCCAATGTGAAACTCGGTAAT 1179
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ACAACAGTCGGAGCTGGAACAATCGATAGGGATTTTCCGGCCAATGTGAAACTCGGTAAC 1194
Query 1180 GGGAAGATGATTTCTGGTGTTAGTGTATACGGTGGACCGGGTCTGGATCCGGGTCGAATG 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGGAAGATGATTTCTGGTGTTAGTGTATACGGTGGACCGGGTCTGGATCCGGGTCGAATG 1254
Query 1240 TATCCGCTTATTTACGGTGGTAGTTTACTCGGCGGCGATGGTTACTCTTCGTCTCTGTGT 1299
|| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1255 TACCCGCTTGTTTACGGTGGTAGTTTACTAGGCGGCGATGGTTACTCATCGTCTCTGTGT 1314
Query 1300 CTTGAAGGCTCGTTGGATCCGAATCTGGTTAAGGGAAAAATCGTTCTTTGTGACAGAGGA 1359
|||||||||||||||||||||||| | || |||||||| |||||||||||||| ||||||
Sbjct 1315 CTTGAAGGCTCGTTGGATCCGAATTTAGTGAAGGGAAAGATCGTTCTTTGTGATAGAGGA 1374
Query 1360 ATCAATTCTAGAGCAACCAAAGGTGAAATCGTACGGAAAAATGGAGGCTTGGCGATGATT 1419
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1375 ATCAATTCTAGAGCAACCAAAGGTGAGATCGTACGGAAAAATGGAGGCTTGGGGATGATT 1434
Query 1420 ATAGCGAATGGTGTGTTCGACGGCGAAGGTTTAGTCGCTGATTGCCACGTGTTACCGGCG 1479
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1435 ATAGCGAATGGTGTGTTTGACGGTGAAGGTTTAGTAGCTGATTGCCACGTGTTACCGGCG 1494
Query 1480 ACATCTGTTGGTGCTTCTGGAGGAGATGAGATTCGAAGGTATATCTCTGAATCATCCAAA 1539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1495 ACATCTGTTGGTGCTTCTGGAGGAGATGAGATTCGTAGGTATATCTCTGAATCATCCAAA 1554
Query 1540 TCTCGTTCATCGAAACATCCAACGGCTACGATTGTTTTCAAAGGGACCCGACTTGGGATC 1599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1555 TCTCGTTCATCGAAACATCCAACGGCTACGATTGTTTTCAAAGGTACCCGACTTGGGATC 1614
Query 1600 CGACCTGCACCGGTTGTGGCATCTTTCTCTGCTCGTGGACCTAATCCAGAGACGCCGGAG 1659
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1615 CGACCTGCACCGGTTGTTGCATCTTTCTCTGCTCGTGGTCCTAATCCAGAGACGCCGGAG 1674
Query 1660 ATTCTTAAACCGGATGTAATCGCACCTGGTTTGAACATTCTAGCTGCTTGGCCTGACCGG 1719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1675 ATTCTTAAACCGGATGTAATCGCACCTGGTTTGAATATTCTAGCTGCTTGGCCTGACCGG 1734
Query 1720 ATTGGTCCATCGGGTGT-ACCTTCTGATAACCGCAGAACTGAATTCAACATTTTATCAGG 1778
||||||||||| ||||| || |||||||||||| |||||||| |||||||||||||||||
Sbjct 1735 ATTGGTCCATCTGGTGTTAC-TTCTGATAACCGGAGAACTGAGTTCAACATTTTATCAGG 1793
Query 1779 CACTTCGATGGCGTGCCCTCACGTGTCGGGTCTAGCTGCTCTGCTTAAGGCGGCTCATCC 1838
|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 1794 CACTTCGATGGCGTGCCCGCACGTGTCTGGTCTAGCTGCTTTGCTTAAGGCGGCTCATCC 1853
Query 1839 TGATTGGAGTCCGGCGGCGATAAGATCAGCCTTGATGACTACGGCTTACAGGGTGGATAA 1898
||||||||||||||||||||||||||||| ||||| || |||||||||| ||| |||||
Sbjct 1854 GGATTGGAGTCCGGCGGCGATAAGATCAGCATTGATAACCACGGCTTACACGGTTGATAA 1913
Query 1899 CCGCGGTGATCCAATGATGGATGAGTCCACTGGCAATACATCATCGGTTATGGATTATGG 1958
| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1914 CAGCGGTGAGCCGATGATGGATGAGTCCACTGGCAATACATCTTCGGTTATGGATTATGG 1973
Query 1959 GTCGGGTCATGTTCATCCAACCAAAGCTATGGATCCGGGACTAGTCTACGATATAACACC 2018
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 1974 TTCGGGTCATGTTCACCCAACCAAAGCTATGGATCCGGGATTAGTCTATGATATAACATC 2033
Query 2019 TTATGATTATATCAACTTCTTGTGTAATTCTAACTACACTGGAACCAACATTGTGACAAT 2078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2034 TTATGATTATATCAACTTCTTGTGTAATTCTAACTACACTAGAACCAACATTGTGACAAT 2093
Query 2079 AACCCGTCGCCAAGCGGACTGCGACGGTGCGAGACGAGCGGGACACGTAGGGAATTTGAA 2138
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct 2094 AACCCGTCGCCAAGCGGACTGTGACGGTGCAAGACGAGCGGGACACGTCGGGAATTTAAA 2153
Query 2139 CTACCCGTCGTTCTCTGTCGTGTTTCAGCAGTATGGAGAGGGTAAAATGTCGACACATTT 2198
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2154 CTACCCGTCGTTCTCTGTCGTGTTTCAGCAGTATGGAGAGAGTAAAATGTCGACACATTT 2213
Query 2199 CATTAGGACAGTGACAAATGTAGGCGATTCTGATTCAGTCTACGAGATTAAGATTAGGCC 2258
||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2214 CATTAGGACTGTGACAAATGTAGGCGATTCGGATTCGGTTTACGAGATTAAGATTAGGCC 2273
Query 2259 GCCGAGAGGGACTACGGTGACTGTTGAGCCGGAGAAGCTATCGTTTAGACGGGTGGGGCA 2318
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2274 GCCTAGAGGGACTACGGTGACGGTTGAGCCGGAGAAGCTATCGTTCAGACGGGTGGGGCA 2333
Query 2319 GAAACTGAGTTTTGTTGTTAGGGTTAGGACCACAGAGGTGAAGCTGTCACCCGGAGCAAC 2378
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||
Sbjct 2334 GAAACTGAGTTTTGTTGTTAGGGTTAAGACCACAGAGGTGAAGTTGTCACCAGGAGCGAC 2393
Query 2379 AAATGTGCAGACTGGTCATATAGTTTGGTCAGACGGGAAACGAAATGTGACAAGTCCCTT 2438
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2394 AAATGTGGAGACTGGTCATATAGTTTGGTCAGATGGGAAACGGAATGTGACAAGTCCCTT 2453
Query 2439 GGTGGTTACTCTTCAACAACCTCTGTGAAGGGTTTTAGGATTTGGTGACCGGGAAAATTC 2498
|||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||
Sbjct 2454 GGTGGTCACTCTTCAACAACCTCTTTGAAGGGGTTTAGGATCTGGTGACCGGGAAAATTC 2513
Query 2499 TGGTCTCTGTTTGT-GTA--AGTGAAAAAGAAAGATCATAAGTTGTTGTTGTCGTCGTCT 2555
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2514 TGGTCTCTGTTTGTTGTACTAGTGAAAAAGAAAGATCATAAGTTGTTGTTGTTGTCGTCT 2573
Query 2556 ATGATCTTTGTTGGGTGTTTGTGTAATATAAATATGTATCTTTTGTT 2602
|||||||||||||| ||| |||||||||||||||||||||||
Sbjct 2574 ATGATCTTTGTTGG-TGT------AATATAAATATGTATCTTTTGTT 2613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129179878225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5