BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478842
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14250.1 | Symbols: | RING/U-box superfamily protein | chr3... 1225 0.0
> AT3G14250.1 | Symbols: | RING/U-box superfamily protein | chr3:4745926-4746958
REVERSE LENGTH=949
Length=949
Score = 1225 bits (663), Expect = 0.0
Identities = 820/897 (91%), Gaps = 6/897 (1%)
Strand=Plus/Plus
Query 13 TCATCATCATCAAGCACAAAGGTGGACACCGATGTGTTGGTAGATGAAACCTACTTCTCT 72
||||| || |||||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct 13 TCATCGTCGTCAAGCACAAAGGTGGACACCGATATGTTGGTAGACGAAACCTACCTCTCT 72
Query 73 GCTTTGTTCGATTACGATGAAGTTTTCCCAATCTCCGACGAAAACTACGCTACGGAGCTC 132
||||| ||||||||||||||| ||||||||||| ||||||||| ||| ||||||||| ||
Sbjct 73 GCTTTATTCGATTACGATGAAATTTTCCCAATCGCCGACGAAAGCTATGCTACGGAGATC 132
Query 133 CATCTCCAAGAAGCTCTGTTTTCTTCCATTGTCGCTTCTACTGGTGGTGTTAATCATCAT 192
||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 133 CATCTCCAAGAAGCTATGTTTTCTTCTTTTGGCGCTTCTACTGTTGGTGTTAATCATCAT 192
Query 193 CCCCAAGTCCAAAGGAATCTCGTCACGCGGGTTAAGCAGGAACCGGAGATCAAAACCGAG 252
|| |||||||| |||||||| ||||||| ||||||||||||||||||||| ||| |||||
Sbjct 193 CCTCAAGTCCATAGGAATCTAGTCACGCTGGTTAAGCAGGAACCGGAGATTAAAGCCGAG 252
Query 253 AATGAACCCACCGAACCATCGAGAAGGTTTTGTATGATCTGTATGGACGAAAAACCTTCC 312
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 253 AATGAACCCATGGAACCATCAAGAAGGTTATGTATGATCTGTATGGACGAAAAACCTTCC 312
Query 313 TCCGACATCTTCCGAGGAACCACTAACTGTGTTCACTTCTACTGCACAGACTGCACCGTC 372
|| |||||||||||||||||||||||||| |||| ||| ||||| ||||| || |||
Sbjct 313 TCAGACATCTTCCGAGGAACCACTAACTGCACTCACGCCTATTGCACCGACTGTACTGTC 372
Query 373 CGGTACGTGGCGACTAAGATCAAAGAAAACGCAGCGAGGATCAAATGTCCTGACGTGGAG 432
|| |||||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 373 CGTTACGTGGCAACTAAGATAAAAGAAAACGCATCGAGGATCAAATGCCCTGACGTGGAG 432
Query 433 TGCACGC-ACCTGATAGAGCCATACACGTGTCGAGATCTAATCCCCAAGGACGTTTTCGA 491
||||||| | ||||||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 433 TGCACGCGA-CTGATAGAGCCTTACACGTGTCGAGATCTAATCCCTAAGGATGTATTCGA 491
Query 492 CCGTTGGGATAAAATCTTGTGCGAGTCTTTGATCTCCTCGTGGGACAAATTCTACTGTCC 551
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 492 CCGTTGGGAGAAAATCTTGTGCGAGTCTTTGATCTCCTCGTGGGACAAATTCTATTGTCC 551
Query 552 GTTCAAAGACTGTTCGGCTATGATGGTGAACGATGAAGGTGGTA-ATGCAAACGTGACGC 610
||||||||| |||||||| |||||||||||| ||||| ||| | |||| ||||||||||
Sbjct 552 GTTCAAAGATTGTTCGGCGATGATGGTGAACAATGAAAATGG-AGATGCTAACGTGACGC 610
Query 611 AGACGGAGTGTCCG-TCTTGTCACCGACTCTTCTGTGTGAAGTGTAAGGTGACGTGGCAT 669
||||||||||| || |||||||| |||| ||||| ||| ||||||||||||| ||||||
Sbjct 611 AGACGGAGTGT-CGTTCTTGTCATAGACTGTTCTGCGTGCAGTGTAAGGTGACATGGCAT 669
Query 670 GCGGGGATTGGGTGTGATGAGTTCCAGAGATTTGGGAATAAGAAGAAGAAGAGTAGTGAT 729
||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 670 GCGGGGATTGGGTGTGATGAGTTTCAAAGATTTGGGAATACGAAGAAGAAGAGTAGTGAT 729
Query 730 GACGAAGATGCTTTGTTGATTCAGATGGCGAAAAATAAGCAGTGGAGAAGGTGTCCTAGT 789
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 730 GAAGACGATGCTTTGTTGATTCAGATGGCAAAAAATAAGCAGTGGAGAAGGTGTCCTAGT 789
Query 790 TGCAAATTCTATGTTGATAAAGTTGAAGGTTGTCAACATATAAATTGCAGGTGTGGATAT 849
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 790 TGCAAATTCTATGTTGATAAAGTCGAGGGTTGTCAACATATAAAATGCAGGTGTGGATAT 849
Query 850 CAGTTTTGCTATGGTTGTGGATCTGTGTGGGGTTCTTCTCACGTATGCCAAATCCGT 906
|||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 850 CAGTTTTGCTATGGTTGTGGATCTGTGTGGAGTTCTTCTCACGCATGCCAAATTCGT 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5