BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478843
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14260.1 | Symbols: | Protein of unknown function (DUF567) ... 1284 0.0
> AT3G14260.1 | Symbols: | Protein of unknown function (DUF567)
| chr3:4747769-4748819 REVERSE LENGTH=950
Length=950
Score = 1284 bits (695), Expect = 0.0
Identities = 856/929 (92%), Gaps = 30/929 (3%)
Strand=Plus/Plus
Query 2 TATATGCAAATAAACCGACGACCTTTTGAAACAAAAACTTGGCAGA-ATCGAATCTGTCC 60
|||||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 38 TATATGCAAATATACCGACGACCTTTTGAGACAAAAACTTGGCA-ATATCGAATCTGTCC 96
Query 61 ATCGGAGACTATGGTGAAGATTCATCCCGATCTGATAACCTCCGGCACCGGAGAAGAAAC 120
| | ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 97 AGCAGAGACTATGGTGAAGATTCATCCCGATCTAACAACCTCCGGCGCCGGAGAAGAAAC 156
Query 121 AA-TATCGCCGTACTTGACGACGGAGCAAGAGACTTTCACTATATGGATGAAGTCGTTGG 179
|| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 157 AAGT-TCACCGTACTTGACGACGGAGCAAGAGAGTTTCACTATATGGATGAAGTCGTTGG 215
Query 180 TGTTCAACACAAATGGCTGCACCGTCTTCGATTCCAAAGGGAAA-ATAATCTATCGTGTC 238
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 216 TGTTCAACACAAATGGCTGCACCGTCTTCGATTCCAAA-GGAAACATAATTTATCGTGTC 274
Query 239 GATAATTATAACTCTAAGAGCTGCCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTC 298
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 275 GACAATTATAATTCTAAGAGCTGTCGTGAAGTTTATCTCATGGATTTGTCCGGTCATGTC 334
Query 299 TTGTTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACTTGGGAAGGATATAGATCA 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 335 TTGTTTACCTTACGTAGACAGAAATTTGGATTATTCAAGACATGGGAAGGATATAGATCA 394
Query 359 TCATCTGGAACAGCTGAATCAACGACAAAACTTGAATATTTTCGAGTGAAAAATAATGTT 418
||||| | ||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 395 TCATCAGCAACAGTTGAATCAACAACAAAACTAGAATATTTTCGAGTGAAAAATAATGTT 454
Query 419 TTTCAAATTCCGAATAAAGATTCATCATCTTCCTATAGAGTCATCGCGGGATCGTGTAGA 478
|||||| |||| |||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 455 TTTCAAGTTCCAAATAAAGATTCATCATCTTCGTATAGAGTCAACGCGGGATCATGTAGA 514
Query 479 AACGATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AACGATGAACAATATTGTTATAAGATGGTAACTCGCGGATCAAGTCTAGCGATTGAGGAT 574
Query 539 CACTGTGGAAAACTATTGGCAGAAGTGAAGAGAAAGCAATCGATAAATGGTTTGAAGTTA 598
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 575 AATTGTGGAAAACTATTGGCAGAAGTGAAGAGAAAACAATCGATAAACGGTTTGAAGTTG 634
Query 599 GGAGATGATGTTTTGACGATGATGGTTGAGTCACAAGTTGATCACTCTTTCATCATTGGA 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 635 GGAGATGATGTTTTGACGATGATGGTGGAGTCACAAGTTGATCACTCTTTCATCATTGGA 694
Query 659 CTTGTTTTAGCTCATAGTCTTATCAATTGTATACTGTAACAGGTATATACTTTACTTAAC 718
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 695 CTTGTTTTAGCTCATAGTCTTATCAATTGTATACTGTAAAAGGTAAATACTTTAC----C 750
Query 719 CGTTTGCTAAATTGATGAGATTTTTGGGTTGTAAACTAGtttttttatttttAGGTT-CC 777
||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 751 -GTT-GCTAAATTGATGAGATTTTTGGGTTGTAAACTA-TTTTTTTATTTT-AGGTTTCC 806
Query 778 GCAAATTTTGTCTTGT-TA--CTTA-TC-A---AAGTACAACTAATGTTACAATGGTATT 829
|||||||||| ||| || |||| | | ||||||||||||||| |||||| |||
Sbjct 807 ACAAATTTTGTAGTGTATATACTTACTTTATCGAAGTACAACTAATGTGACAATGTTATA 866
Query 830 T-TAAGAGATGTTACTTGTTGTAAAGTAGAGTTTTAATAAAGTGAGTGTAAGCTCTCTTT 888
| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 867 TCTGAT-GATGTTACTTGTTGTAAGGTAGAGTTTTAATAAAGTGAGTGTAAGCTCTCTTT 925
Query 889 TAATTTCTTCGTTGAAAATGTTCTTCAAC 917
| ||||||||||||||||||| |||
Sbjct 926 T-----CTTCGTTGAAAATGTTCTTAAAC 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5