BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478845
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14280.1 | Symbols: | unknown protein; Has 51 Blast hits to... 1031 0.0
> AT3G14280.1 | Symbols: | unknown protein; Has 51 Blast hits
to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:4761432-4762395 REVERSE
LENGTH=757
Length=757
Score = 1031 bits (558), Expect = 0.0
Identities = 697/759 (92%), Gaps = 29/759 (4%)
Strand=Plus/Plus
Query 1 CAATCATCGGAATTTATAATTTTGATCT-TGAGACCTATAAACCAAACGATTTGTCCAAA 59
||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||
Sbjct 1 CAATCATCGGAATTTATAATTTTCTTCTCTGAGAACTATAAACCAAACGAGTTGTCCAAA 60
Query 60 AAGAAGAGATCAAAGTTTCTTCTTGAA-AAAGAACGAAACACAAAGGCTATGGCATATTC 118
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 61 AAGAAGAGATCAAAGTTTCTTCTTGAAGAAAGAAAGAAACACAAAAGCTATGGCATATTC 120
Query 119 AACCAAACTTTGCCTTCCTCTTAAAACGCCATGTTTTGTTCCAAAGACAGTAAGATCAAA 178
||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 121 AACTAAACTTTATCTTCCTCTTAAAACACCATGTTTTGTTCCAAAGACAGTAAGAGCAAA 180
Query 179 GACTTGGATGCTTCAACAGAGTCAAGTTCATGTTAATGTCAAGCAAGTCACAGTTTCACA 238
||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 181 GACTTTGATGCTTCAACAGAGTCAAGTTCATGTTAAAGTCAAGAAAGCCACAGTTTCACA 240
Query 239 GCCTCAGCCGATCAGATACTCCACCAAGAACACTGTTTTTGAAGATCCGACACAAGGGAT 298
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 GCCTCAGCCGATCAGATACTCCACCAAGAACATTGTTTTTGAAGATCCGATACAAGGGAT 300
Query 299 TATCTGTTACACAGATGATAATGGAGAGGTTATATGTGAAGGATACGATGAAGGTCCTCG 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATCTGTTACACAGATGATAATGGAGAGGTTATATGTGAAGGATACGATGAAGGTCCTCG 360
Query 359 TTGTCCCACACAGAGTCCAATGGTAGCTTCTTACTCAAGAGAGGTGGAGATTCTTGATCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGTCCCACACAGAGTCCAATGGTAGCTTCTTACTCAAGAGAGGTGGAGATTCTTGATCT 420
Query 419 TCTGCAAAGAAGTTATCAGAAGCTGAGTAATTCAAAGAAGGATGGTCAAAGACAGATACT 478
||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||| |
Sbjct 421 TCTGCAAAGAAGTTATCAGGAGCTGAGCGATTCAAACAAGGATGGTCAAAGACCGATAAT 480
Query 479 TGCTTCACAACAAGAGTTCACGATGATCAAATGGAGCAGCTTTGACTTCCTCTAAATCCC 538
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCTTCAGAACAAGAGTTCATGATGATCAAATGGAGCAGCTTTGACTTCCTCTAAATCCC 540
Query 539 -TTT-T---------A---AAA--TC----T--GGTTCTCTCTTCAAAATGGCCTCTTGA 576
||| | | ||| || | |||||||||||||||| ||||||||||
Sbjct 541 CTTTCTTTTTTCTTCATCGAAACATCAAAATCTGGTTCTCTCTTCAAAAAGGCCTCTTGA 600
Query 577 ATAAGAATGTACAGAAAAAAGGCTGTGAAAGAAGCAGCGATTTGCTTCTTTCTTGTTTCT 636
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 ATAAGAATGTACAGAAAAAAGGCTATGAAAGAAGCAGCGATTTGCTTCTTTCTTGTTTCT 660
Query 637 CTTTTGTAAGAACAAAAACGTCCAGATTTTGATTTCAATCTTTCACaaaaaaaaaaGGTA 696
|||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 661 CTTTTGTAAGAA-ACTTACGTCCAGATTTTGATTTCAATCTTTCACCAAAAAAAAGGGTA 719
Query 697 CGAGGATCCAACATATGTATAGACAAAAGAATCTTTCAT 735
|||||||||||||||| | | |||||||||||||||||
Sbjct 720 CGAGGATCCAACATAT--A-A-ACAAAAGAATCTTTCAT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5