BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478846
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14290.1 | Symbols: PAE2 | 20S proteasome alpha subunit E2 |... 1459 0.0
AT1G53850.1 | Symbols: PAE1, ATPAE1 | 20S proteasome alpha subu... 859 0.0
> AT3G14290.1 | Symbols: PAE2 | 20S proteasome alpha subunit E2
| chr3:4764149-4766586 FORWARD LENGTH=1031
Length=1031
Score = 1459 bits (790), Expect = 0.0
Identities = 876/917 (96%), Gaps = 7/917 (1%)
Strand=Plus/Plus
Query 1 ACATTGAGGTTTATTTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 ACATTGAGGTTTATCTCAGATCGAAATCGAGAAGAAGATGTTTCTCACTAGGACTGAGTA 135
Query 61 TGACAGAGGAGTCAATACCTTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TGACAGAGGAGTCAATACATTTTCTCCTGAAGGTCGTCTCTTTCAGGTTGAGTATGCCAT 195
Query 121 TGAGGCTATCAAGCTTGGTTCTACTGCTATTGGCGTAAAGACGAAAGAGGGGGTTGTTCT 180
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 196 TGAAGCTATCAAGCTTGGTTCTACTGCTATTGGTGTAAAGACGAAAGAGGGAGTTGTTCT 255
Query 181 TGCAGTCGAGAAGCGTATTACTTCGCCTTTGCTGGAACCGAGCAGTGTTGAGAAGATTAT 240
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 256 TGCAGTCGAGAAGCGTATTACTTCGCCTTTACTGGAGCCGAGTAGTGTTGAGAAGATTAT 315
Query 241 GGAAATTGATGACCATATAGGTTGTGCCATGAGTGGTCTGATTGCTGACGCGCGAACACT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 316 GGAAATTGATGACCATATAGGTTGTGCTATGAGTGGTCTGATTGCTGACGCGCGAACACT 375
Query 301 TGTTGAGCATGCACGAGTAGAGACCCAAAACCACAGGTTCTCGTATGGTGAGCCAATGAC 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 376 TGTTGAGCATGCACGAGTAGAGACCCAGAACCACAGGTTCTCGTATGGTGAGCCAATGAC 435
Query 361 TGTAGAATCTACAACACAAGCGTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGATGA 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 436 TGTAGAATCTACAACACAAGCTTTGTGTGATCTTGCTTTACGGTTTGGTGAAGGAGAGGA 495
Query 421 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCCGGGCATGATGAAAATGG 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 496 AGAGTCAATGTCTCGTCCATTTGGAGTATCCCTTCTCATTGCTGGGCATGATGAAAATGG 555
Query 481 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAACGCAAAGGCAAT 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 556 ACCGAGCCTGTACTACACAGATCCATCGGGAACATTCTGGCAATGCAATGCAAAGGCAAT 615
Query 541 TGGGTCAGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TGGGTCTGGCTCAGAAGGAGCTGATAGTTCTCTCCAAGAGCAATTCAACAAGGATATAAC 675
Query 601 TCTTCAAGAAGCTGAAACAATCGCTGTATCTATCCTTAAGCAAGTAATGGAAGAAAAGGT 660
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 676 TCTTCAAGAAGCTGAAACAATAGCTGTATCTATCCTAAAGCAAGTAATGGAAGAAAAGGT 735
Query 661 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GACTCCAAACAATGTCGACATTGCCAAAGTCGCACCAGCTTATCACCTCTACACTCCTCA 795
Query 721 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGACATTCTCTTCCTGTTA 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 796 GGAGGTTGAAGCCGTCATCAGTCGTCTATGAAGAAATAAACCGCCATTCTCTTCCTGTTA 855
Query 781 TCTTACCTGGTCTGTTGGGTAATTTATCAGGCTTG-GTATGCTTCCGGTTATCTAAACCA 839
|||||||| ||||||| ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 856 TCTTACCTTGTCTGTTCGGTAATTTATCAGGCTTCTGTCTGCTTCCGGTTCTCTAAACCA 915
Query 840 AAGACCTTC-TTTCACA-AATG-GCACAATTAATCCTATCGAGTTGAGTTTTATTGAGCT 896
|| | || |||| ||| | | ||| || ||||||||||||||||||||||||
Sbjct 916 AAAA--TTAGTTTCGTTTAATCAG-ATAATGGATTTTATCGAGTTGAGTTTTATTGAGCT 972
Query 897 TTCTATCTACATTTTTT 913
|||||||||||||||||
Sbjct 973 TTCTATCTACATTTTTT 989
> AT1G53850.1 | Symbols: PAE1, ATPAE1 | 20S proteasome alpha subunit
E1 | chr1:20103953-20106015 REVERSE LENGTH=1027
Length=1027
Score = 859 bits (465), Expect = 0.0
Identities = 646/735 (88%), Gaps = 6/735 (1%)
Strand=Plus/Plus
Query 30 AGAAGAAGATGTTTCTCACTAGGACTGAGTATGACAGAGGAGTCAATACCTTTTCTCCTG 89
|||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |
Sbjct 128 AGAAGAAGATGTTTCTCACTAGAACTGAGTATGACAGAGGAGTGAACACTTTTTCTCCAG 187
Query 90 AAGGTCGTCTCTTTCAGGTTGAGTATGCCATTGAGGCTATCAAGCTTGGTTCTACTGCTA 149
|||| | || ||||| || || ||||||||||| ||||||||||||||||||||||| |
Sbjct 188 AAGGAAGGCTATTTCAAGTGGAATATGCCATTGAAGCTATCAAGCTTGGTTCTACTGCAA 247
Query 150 TTGGCGTAAAGACGAAAGAGGGGGTTGTTCTTGCAGTCGAGAAGCGTATTACTTCGCCTT 209
|||| |||||||| ||||| || ||||| ||||| |||||||||||||| || ||||| |
Sbjct 248 TTGGAGTAAAGACAAAAGAAGGAGTTGTGCTTGCTGTCGAGAAGCGTATCACGTCGCCAT 307
Query 210 TGCTGGAACCGAGCAGTGTTGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCCA 269
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 308 TGCTGGAACCGAGCAGTGTGGAGAAGATTATGGAAATTGATGACCATATTGGTTGTGCTA 367
Query 270 TGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGC-ACGAGTAGAGACCCAA 328
|||| ||| | |||||||||||||| ||||||||||||||||| | |||| || || |||
Sbjct 368 TGAGCGGTTTAATTGCTGACGCGCGCACACTTGTTGAGCATGCTA-GAGTTGAAACTCAA 426
Query 329 AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAAGCGTTGTGT 388
||||| || ||||||||||||||||| ||||||||||| || ||||||||||| |||||
Sbjct 427 AACCATAGATTCTCGTATGGTGAGCCGATGACTGTAGAGTCCACAACACAAGCACTGTGT 486
Query 389 GATCTTGCTTTACGGTTTGGTGAAGGAGATGAAGAGTCAATGTCTCGTCCATTTGGAGTA 448
||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 487 GATCTGGCTTTACGGTTTGGTGAAGGAGAGGAAGAATCAATGTCTCGGCCGTTTGGAGTA 546
Query 449 TCCCTTCTCATTGCCGGGCATGATGAAAATGGACCGAGCCTGTACTACACAGATCCATCG 508
|| ||||||||||| || ||||||||||||||||| ||| |||||||||| ||||| ||
Sbjct 547 TCTCTTCTCATTGCTGGCCATGATGAAAATGGACCAAGCTTGTACTACACTGATCCTTCA 606
Query 509 GGAACATTCTGGCAATGCAACGCAAAGGCAATTGGGTCAGGCTCAGAAGGAGCTGATAGT 568
|||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct 607 GGAACATTCTGGCAGTGCAATGCAAAGGCAATTGGTTCAGGTTCTGAAGGAGCTGATAGC 666
Query 569 TCTCTCCAAGAGCAATTCAACAAGGATATAACTCTTCAAGAAGCTGAAACAATCGCTGTA 628
||||| ||||||||||||||||| ||| | |||| ||||||||||| || |||||||||
Sbjct 667 TCTCTTCAAGAGCAATTCAACAAAGATTTGTCTCTACAAGAAGCTGAGACTATCGCTGTA 726
Query 629 TCTATCCTTAAGCAAGTAATGGAAGAAAAGGTGACTCCAAACAATGTCGACATTGCCAAA 688
|||||||| |||||||| ||||||||||||||||||||||| || || || ||||||||
Sbjct 727 TCTATCCTAAAGCAAGTTATGGAAGAAAAGGTGACTCCAAATAACGTGGATATTGCCAAG 786
Query 689 GTCGCACCAGCTTATCACCTCTACACTCCTCAGGAGGTTGAAGCCGTCATCAG-TCGTCT 747
|| |||||||||||||| ||||||||||| || || || ||||| |||||| | ||||||
Sbjct 787 GTAGCACCAGCTTATCATCTCTACACTCCACAAGAAGTCGAAGCAGTCATC-GCTCGTCT 845
Query 748 ATGAA-GAAATAAAC 761
||| |||| ||||
Sbjct 846 TTGATTGAAA-AAAC 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44607922536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5