BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478848

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14320.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)...   518    3e-146


> AT3G14320.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) 
family protein | chr3:4777731-4778345 REVERSE LENGTH=615
Length=615

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 390/439 (89%), Gaps = 24/439 (5%)
 Strand=Plus/Plus

Query  1    ATGAAAGAATCAGATGCCGTCAATCTAATACATCTCGGAATAAATATTGGCTTCGCTTTG  60
            ||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||| 
Sbjct  1    ATGAAAGAATCCGATGCTGTCATTCTAATACATCTCGGAATAAATATTGTCTTCGCTTTC  60

Query  61   TTTTTCTTTAGGATTTCGTCCGTGGTAGTGAGTTGTC-TTATTAAATGTTATAGTTATAC  119
            ||||||||| |||||||| |||||||||||||||| | | |||||||||||||   ||||
Sbjct  61   TTTTTCTTTGGGATTTCGGCCGTGGTAGTGAGTTG-CATCATTAAATGTTATA---ATAC  116

Query  120  tcatgatgatgatcatcatgatcctgatcatgacaacaacaacaacgatgatcatgtcag  179
            |||||||||||   |||   |   ||||||||   ||||||||||||||| |||||||||
Sbjct  117  TCATGATGATG---ATC---A---TGATCATG---ACAACAACAACGATGGTCATGTCAG  164

Query  180  catcaCCATC-AGGCAATGTGTAGGAATAAAGCCGTATGTTCTCCGATCGATCCCTATCA  238
            |||||||||| ||| || |||| || |||||||| || ||||| ||||||||||||||| 
Sbjct  165  CATCACCATCAAGG-AACGTGTCGGTATAAAGCCTTACGTTCTACGATCGATCCCTATCG  223

Query  239  TAGACTTCAACT-CCAAAGACTTCAAAGACGACGTCCTCGAATGCGTCGTTTGTCTCTCG  297
            |||||||||| | ||||||||||| || |  |||||||||||||||||||||||||||||
Sbjct  224  TAGACTTCAA-TACCAAAGACTTC-AA-A-TACGTCCTCGAATGCGTCGTTTGTCTCTCG  279

Query  298  GAGCTAGCCGACAGAGACAAAGCTAGGGTTTTGCCGAGCTGCGATCACTTGTTTCACGTT  357
            |||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  280  GAGCTAGCCGATGGAGACAAAGCTAGGGTTTTGCCGAGCTGTGATCACTGGTTTCACGTT  339

Query  358  GAATGTATCGACTCGTGGCTTCAATCAAACTCCACTTGTCCTATATGTAGAAAGAGAGTT  417
            |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  340  GAATGTATAGACTCCTGGCTGCAATCAAACTCCACTTGTCCTATATGTAGAAAGAGAGTT  399

Query  418  TGTTTGAAGCAGTCACGAA  436
            ||||||||||||||| |||
Sbjct  400  TGTTTGAAGCAGTCAAGAA  418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5