BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478855
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14380.1 | Symbols: | Uncharacterised protein family (UPF04... 909 0.0
> AT3G14380.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:4802952-4803811 REVERSE LENGTH=772
Length=772
Score = 909 bits (492), Expect = 0.0
Identities = 616/673 (92%), Gaps = 20/673 (3%)
Strand=Plus/Plus
Query 1 AAAACAAAATCATGGACAAGACTGATCAAACAGCTATTGACGGCTCAGCTTTAGAGCTTA 60
|||| |||| |||||||||||||||||||| || ||||||| |||||||||| |||||
Sbjct 2 AAAAAAAAAAGATGGACAAGACTGATCAAACCGCCATTGACGAATCAGCTTTAGTGCTTA 61
Query 61 ACCGCACTGAGAAAACGGTAGAGGCGGTCTTGCGAGTAGCATCAATGGCTCTAAGTATTA 120
| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 ATCGCACTGAGAAATCGGCAGAGGCGGTCCTGCGAGTAGCATCAATGGCTCTAAGTATTA 121
Query 121 CGGGTCTCGTCATCATGATCAAGAACTCTATCTCCAACGACTTTGGCTCTCTTTCTTACT 180
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 122 CGGGTCTCGTCATCATGATCAAGAACTCTATCTCCAACGAATTTGGCTCTGTTTCTTACT 181
Query 181 CAAATCTTGGAGCTTTCATGTATTTGGTGGGTGCTAATGGCGTTTGTGCTGCCTATTCTC 240
||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 182 CAAATATTGGAGCTTTCATGTATTTGGTGAGTGCTAATGGCGTTTGTGCTGCTTATTCTC 241
Query 241 TTCTTTCTGCTCTCGCAATATTAGCCCTTCCGTGTCCAATAAGCAAGGTCCAAGTCAGGA 300
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 242 TTCTCTCGGCTCTCGCAATATTAGCGCTTCCGTGTCCAATAAGCAAGGTCCAAGTCAGGA 301
Query 301 CATTATTCTTGCTAGACCAGGTGGTCACATACGTGGTTCTAGCGGCTGGGGCTGTATCTG 360
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CATTGTTCTTGCTTGACCAGGTGGTCACATACGTGGTTCTAGCGGCTGGGGCTGTATCTG 361
Query 361 CAGAGACGGTTTACTTAGCATACTATGGAAACATACCCATCACTTGGAGCTCTGCTTGTG 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 362 CAGAGACGGTTTACTTAGCATACTATGGAAACATACCCATTACTTGGAGCTCTGCTTGTG 421
Query 421 ACTCCTATGGAATC-TTCTGTCACAAGGCATTGATCTCGGTTGTGTTCACATTCGTTGTC 479
||||||||||| || |||||||| || |||||||| |||||||| |||||||||||||||
Sbjct 422 ACTCCTATGGA-TCCTTCTGTCATAATGCATTGATTTCGGTTGTTTTCACATTCGTTGTC 480
Query 480 TCCCTTCTCTACATGTTGCTCTCGCTTATCTCTTCCTATCGACTCTTCAGCAGATTTGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 TCCCTTCTCTACATGTTGCTCTCGCTTATCTCTTCCTATCGACTCTTCACCAGATTTGAA 540
Query 540 GCACCCTAAA--A-------GAACACAAAG--------G-CAACAAGAGTGACAGAGGCA 581
|||||||||| | |||||||||| | ||||||| |||||||||| |
Sbjct 541 GCACCCTAAACGAAATCAAAGAACACAAAGAAAACAAAGGCAACAAGCGTGACAGAGGAA 600
Query 582 GAAAGATATATGTCTTGTTTGGTTGAAGTGAGTAACTGAATATTAAGGTTTTTCGCTAAT 641
||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 601 TAAAGATATATGTCCTATTTGGTTAAAGTGAGTAATTGAATATTAAGGTTTTTCGCTAAT 660
Query 642 TACAATTTTCTCT 654
|||| |||| |||
Sbjct 661 TACATTTTTGTCT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5