BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478858
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14395.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 787 0.0
> AT3G14395.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:4810923-4811481 FORWARD LENGTH=559
Length=559
Score = 787 bits (426), Expect = 0.0
Identities = 504/540 (93%), Gaps = 12/540 (2%)
Strand=Plus/Plus
Query 1 CAATCTCTCATTTCTATC--t-ttttttCCTTCCCATGCGCAACGAAGAAGCTTTCTTCT 57
||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 22 CAATCTCTCATTTCTCTCTTTCTTTTTTCCTTCCCATGCGCAACGAAGAAGCTTTCTTCT 81
Query 58 CCCAACACTCTTTTTTCGATTCAGAAGATCTCAATCAGAAATGGAAACAGTTAAGACCTC 117
||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 82 CCCAACATTCTCTTTTGGATTCAGAAGATCTCAATCAGCAATGGAAACAGTTAAGACCTC 141
Query 118 CAGGTTTATC-ACTGAGGTGGCTCCGGCTAAGTTTATATCGGCGACAAGAGAACCATTCA 176
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CAGGTTCA-CTACTGAGGTGGCTCCGGCTAAGTTTATATCGGCGACAAGAGAACCATTCA 200
Query 177 AGAACATGTTGACAACCATCTCCGAGGAAGACTTTGACTTTGATGAATTAGTCAGAGCCA 236
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 201 AGAACATGTTGACAACAATCTCCGAGGAAGACTTTGACTTTGATGAACTAGTCAGAGCCA 260
Query 237 CTGCAGATAGACTCTCATCTTCTTGTCCAGGCTCTTCCTCTTGGTCTCTTGTTCACTACG 296
||||||| |||||||| ||||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 261 CTGCAGAGAGACTCTCTTCTTCTTGTCCAGGCTCCTCCTCCTGGTCTCTTGCTCACTACG 320
Query 297 CCAAGATCAACAGAGTCTCTTCTTCTTAGAGCATTCAATTGCCATTCCAAAATGCAtttt 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 321 CCAAGATCAACAGAGTCTCTTCTTCTTAGAGCATTCAATTGCCATCCCAAAATGCATTTT 380
Query 357 tt-ctctct-tttttCAATAATACCGAAGAAGAAGATTTGTTTGTAATCTCTTCAGCATC 414
|| || ||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 381 TTTCTTTCTCTTTTTCAATAATACCAAAGAAGATGATCTGTTTGTAATCTCTTCAGCATC 440
Query 415 AGAGTTTTCC-ATCTACTTCTCGTTGTTGAATGTTTTCAC-GCTAGCGTTCTTGAATTAT 472
|||||||| ||||||||| ||||||||||||||||| | |||||| ||||||||||||
Sbjct 441 AGAGTTTTTTTATCTACTTCGCGTTGTTGAATGTTTTC-CTGCTAGCATTCTTGAATTAT 499
Query 473 ATGTTATGATCACTTCTGTTTATTAGCATTCTTGAATCACCTATGATCAATCCTTTTATG 532
| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 500 -T-TTATGATCACTTCTGTTTATTAGCATTCTTGAATCATCTATGATCGATCCTTTTATG 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25468712529
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5