BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478869
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:4... 1363 0.0
> AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601
FORWARD LENGTH=984
Length=984
Score = 1363 bits (738), Expect = 0.0
Identities = 938/1025 (92%), Gaps = 52/1025 (5%)
Strand=Plus/Plus
Query 1 ATGGCTACGGTCACTGAGATGCCCACTGATGTTGTTGTTGTCGACGATGTTAATGGAA-T 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 ATGGCTACGGTCACTGAGATGCCCACTGATGTTGTTGTTGTCGACGATGTTAA-GGAAGT 59
Query 60 TAGTACCAAAAGCGATGGCGAAAAGATCATAGATGAGGGAATTGAGAAGAGCTCGATCAC 119
||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 TAGTACC-AAA---A--GCGAAAAGATCATCGATGAGGGAATTGAGAAGAGCTCGATCAC 113
Query 120 GTG-TTCTAAAACCGAGACTGAATCCGAGCTCAAACCCAAATCCGACTTTGATATGCAGA 178
| | |||||||||||| |||| | | | | | || | |||||||||| |
Sbjct 114 G-GATTCTAAAACCGAAACTG-A----A--T------C---T-CGGC-TTGATATGCACA 154
Query 179 AGCTTGTGGCTATGTTCAAGAAACTCAATCCTTTGGCCAAAGAGTTTTTTCCTTCTTACT 238
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 155 AGCTTGTGGCTATGTTCAAGAAACTGAATCCTTTGGCCAAGGAGTTTTTCCCTTCTTACT 214
Query 239 ATGATCCGAAGAAGAACCATCAGGTGGGGAAAGCTAATCAATTTCTATCGGCTGACGATT 298
| ||||||||||||||| ||||||| | || ||||| |||||||| ||||||||||||
Sbjct 215 ACGATCCGAAGAAGAACAATCAGGTAGCTAAGGCTAACCAATTTCTGCCGGCTGACGATT 274
Query 299 TTGCCACCACCAATAAACAATCTGGTGAAGAATTTGATCCTGATGCCAAAAAGGATGACA 358
||| |||||||| || |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 275 TTGAGACCACCAAGAAGCAATCTGGTGAAGAATTTGATCTTGATGCCAAGAAGGATGACA 334
Query 359 ATACGCGCAAGAGAAGAAACTATAGCCAAGGGAGGAGGAGGTTAACTGGAAGAATTTCTA 418
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 335 ATACCCGCAAGAGAAGAAACTATAGCCAAGGGAGAAGGAGGTTAACTGGAAGAATTTCTA 394
Query 419 AGGCTCAAAGAGAGGATAGTATTAGAAGAACAGTTTATGTTTCTGACATTGACCAGAGTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 AGGCTCAAAGAGAGGATAGTATTAGAAGAACAGTTTATGTTTCTGACATTGACCAGAGTG 454
Query 479 TGACTGAGGAGGGTCTTGCAGGCTTGTTTAGTAACTGTGGACAAGTTGTTGACTGTCGAA 538
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 455 TGACTGAGGAGGGTCTTGCTGGCTTGTTTAGTAACTGTGGACAAGTTGTTGACTGTAGAA 514
Query 539 TTTGTGGCGATCCACATTCAGTTCTTCGATTTGCGTTTGTTGAGTTTGCTGATGACCAGG 598
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 515 TTTGTGGCGATCCACATTCGGTTCTTCGATTTGCGTTTGTTGAGTTTGCTGATGACCAGG 574
Query 599 GCGCACGA-GAAGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTC 657
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GCGCAC-ATGAAGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTC 633
Query 658 --A-----AAAA-CTGCCATTCTACCAGTGAATCCCACATTTCTTCCAAGGGTAAATGCT 709
| |||| ||||||| |||||||||||||||||||||||||||||| | |
Sbjct 634 TTACCCTCAAAAACTGCCATCCTACCAGTGAATCCCACATTTCTTCCAAGG-T-----C- 686
Query 710 CCGATTCAGAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACAAATATCGACA 769
| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 687 ---A----GAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACCAACATCGACA 739
Query 770 AGAAGGTTTCTCAAGCTGATGTGAGAAACTTCTTTGAGTCTGCATGTGGTGAGGTAACTC 829
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 740 AGAAAGTTTCTCAAGCTGATGTGAGAAACTTCTTTGAATCTGCATGTGGTGAGGTAACTC 799
Query 830 GTCTGAGGCTTCTTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GTCTGAGGCTTCTTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTC 859
Query 890 TGGCAGATAGTGCACTTAGGGCGCTCAATTGCAGCGGGATGGTCGTTGGATCCCAACCGA 949
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 860 TGGCAGATAGTGCACTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGA 919
Query 950 TAAGGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TAAGGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAA 979
Query 1010 ACTAG 1014
|||||
Sbjct 980 ACTAG 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5