BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478879
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14600.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 937 0.0
AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 496 2e-139
> AT3G14600.1 | Symbols: | Ribosomal protein L18ae/LX family protein
| chr3:4910697-4912173 FORWARD LENGTH=853
Length=853
Score = 937 bits (507), Expect = 0.0
Identities = 578/612 (94%), Gaps = 6/612 (1%)
Strand=Plus/Plus
Query 1 AGCGCCACCGTTTAGCTCCTTTCTCTCTG-TTT-ATC---GCTGATTTCGTCAGAGCTTG 55
|||||||||||||||||| |||||||||| ||| || ||||| ||||| |||||||
Sbjct 4 AGCGCCACCGTTTAGCTCTTTTCTCTCTGTTTTGCTCTTGGCTGA-TTCGTTGGAGCTTG 62
Query 56 ATCTCTCCGTAGAAATGGGTGCTTTCCGGTTTCACCAATACCAAGTGGTTGGGAGAGCCC 115
|||||||||| |||||||||| ||||||||||||||| || || ||||||||||||||||
Sbjct 63 ATCTCTCCGTGGAAATGGGTGGTTTCCGGTTTCACCAGTATCAGGTGGTTGGGAGAGCCC 122
Query 116 TCCCGACTGAGAAAGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTAGAAATG 175
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCCCGACAGAGAACGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTAGAAATG 182
Query 176 AAGTATGCGCCAAGTCCAAGTTTTGGTACTTCATGAGGAAATTGAAGAAGGTCAAGAAAA 235
|||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 183 AAGTATGCGCCAAGTCCAAGTTCTGGTACTTCATGAGGAAACTGAAGAAGGTGAAGAAAA 242
Query 236 GCAACGGACAGATGCTTGCCATCAATGAGATTTTCGAGAAGAATCCTACGACAATCAAGA 295
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 243 GCAACGGACAGATGCTTGCCATCAATGAGATTTTCGAGAAGAACCCAACGACCATCAAGA 302
Query 296 ACTACGGTATCTGGCTGCGATATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGT 355
||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACTACGGGATCTGGTTGCGTTATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGT 362
Query 356 ACCGTGACACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACCGTGACACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTC 422
Query 416 ATAGAGTGAGGTTCCCTTGCATTCAGATCATCAAGACTGCAACAGTCCCTGCAAAGCTGT 475
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 423 ATAGAGTGAGGTTCCCTTGCATTCAGATCATCAAGACTGCGACTGTCCCTGCAAAGCTTT 482
Query 476 GCAAGAGAGAGATCACCAAGCAGTTCCACAACTCGAAGATCAAGTTCCCTCTTGTTTTCA 535
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 483 GCAAGAGAGAGATCACCAAGCAGTTCCATAACTCGAAGATCAAGTTCCCTCTTGTTTTCA 542
Query 536 GAAAGGTCAGACCACCAACCAGGAAGCTGAAGACTACATACAAGGCATCAAAGCCTAACC 595
| |||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||
Sbjct 543 GGAAGGTCAGACCACCAAGCAGGAAGCTTAAGACTACATACAAGGCATCAAAACCTAACC 602
Query 596 TTTTCATGTAGA 607
||||||||||||
Sbjct 603 TTTTCATGTAGA 614
Score = 95.3 bits (51), Expect = 7e-19
Identities = 61/66 (92%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 607 ATAGGGTTCGTGTTCCTAGTCTGAACAAAACACTGGAGTTATCTTCTCTTGAAGATTTTT 666
||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 640 ATAGGCTTCTTGTTCCTAGTCTGAACAAAACACTGGAGTTATCTTCTTTTGAACATTTTT 699
Query 667 GAACTT 672
|||||
Sbjct 700 CAACTT 705
> AT2G34480.1 | Symbols: | Ribosomal protein L18ae/LX family protein
| chr2:14532708-14534239 REVERSE LENGTH=823
Length=823
Score = 496 bits (268), Expect = 2e-139
Identities = 456/546 (84%), Gaps = 16/546 (3%)
Strand=Plus/Plus
Query 68 AAATGGGTGCTTTCCGGTTTCACCAATACCAAGTGGTTGGG-AGAGCCCTCCCGACTGAG 126
|||||||||||||| |||||||||| ||||| || | |||| ||||| |||||||| |||
Sbjct 77 AAATGGGTGCTTTCAGGTTTCACCAGTACCAGGTTG-TGGGAAGAGCTCTCCCGACAGAG 135
Query 127 AAAGATGAGCACCCTAAGATCTACAGGATGAAGCTTTGGGGTA-GAAATGAAGTAT-GCG 184
|| |||| ||| |||||||| |||||||||||||| |||| || | || || || | | |
Sbjct 136 AAGGATGTGCAGCCTAAGATTTACAGGATGAAGCTCTGGGCTACG-AACGAGGT-TCGTG 193
Query 185 CCAAGTCCAAGTTTTGGTACTTCATGAGGAAATTGAAGAAGGTCAAGAAAAGCAACGGAC 244
||||||||||||| ||||| ||| ||||||| | |||||||| ||||| || || ||||
Sbjct 194 CCAAGTCCAAGTTCTGGTATTTCTTGAGGAAGCTCAAGAAGGTGAAGAAGAGTAATGGAC 253
Query 245 AGATGCTTGCCATCAATGAGAT-TTTCGAGAAGAATCCTACGACAATCAAGAACTACGGT 303
||||||| |||||||| ||||| | | |||||||| || || || |||||||||| ||||
Sbjct 254 AGATGCTCGCCATCAACGAGATCTAT-GAGAAGAACCCAACAACGATCAAGAACTTCGGT 312
Query 304 ATCTGGCTGCGATATCAGAGCCGAACTGGGTACCACAACATGTACAAGGAGTACCGTGAC 363
|| ||| || | || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 313 ATTTGGTTGAGGTACCAGAGTAGAACTGGGTACCACAACATGTACAAGGAGTACCGTGAC 372
Query 364 ACAACACTCAATGGTGGAGTGGAGCAGATGTACACTGAGATGGCTTCTCGTCATAGAGTG 423
|| || || || || | || ||||||||||||||||||||||| || ||||| | ||
Sbjct 373 ACCACTCTTAACGGAGCTGTTGAGCAGATGTACACTGAGATGGCATCCCGTCACCGTGTC 432
Query 424 AGGTTCCCTTGCATTCAGATCATCAAGACTGCAACAGTCCCTGCAAAGCTGTGCAAGAGA 483
|| |||||||||||||||||||||||||| || || ||||| || |||||||||||||||
Sbjct 433 AGATTCCCTTGCATTCAGATCATCAAGACAGCCACTGTCCCAGCCAAGCTGTGCAAGAGA 492
Query 484 GAGATCACCAAGCAGTTCCACAACT-CGAAGATCAAGTTCCCTCTTGTT-TTCAGAAAGG 541
|||| ||| || |||||||||||| | |||||||||||||| ||| | ||| | ||||
Sbjct 493 GAGAGCACTAAACAGTTCCACAACAGC-AAGATCAAGTTCCCA-TTGGTGTTCCGCAAGG 550
Query 542 TCAGACCACCAACCAGGAAGCTGAAGACTACATACAAGGC-ATCAAAGCCTAACCTT-TT 599
| |||||||||| ||||||||||||||| || |||||||| | ||| ||| ||| || ||
Sbjct 551 TTAGACCACCAAGCAGGAAGCTGAAGACGACTTACAAGGCCAACAA-GCCCAAC-TTGTT 608
Query 600 CATGTA 605
||||||
Sbjct 609 CATGTA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5