BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478883
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14710.1 | Symbols: | RNI-like superfamily protein | chr3:4... 1881 0.0
> AT3G14710.1 | Symbols: | RNI-like superfamily protein | chr3:4941545-4943055
FORWARD LENGTH=1329
Length=1329
Score = 1881 bits (1018), Expect = 0.0
Identities = 1234/1338 (92%), Gaps = 15/1338 (1%)
Strand=Plus/Plus
Query 1 ATGCATCCAGAGACAGAACAAGCCCCT-TTAGTGACGGTTTCACCTTCCAAGAAGACTAA 59
|||||||| |||||||| |||| ||| || | | ||| || ||||||||||||||||
Sbjct 1 ATGCATCCCGAGACAGAGCAAG--CCTGTT--T-A--GTTCCATCTTCCAAGAAGACTAA 53
Query 60 GCTATGCAGTGAGAACTTTGAAGACAAATTCAGCAGCTTGCATGAGAGTGTTCTTAGCAG 119
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 54 GCTATGCAGTGAGAACTTTGAAGACAAATTCAGCAGCTTGCTTGAGAGTGTTGTTAGCAT 113
Query 120 AATT-TTGAGTCAACTTCAAACTGTTGAAGCTGTTAGTACTTCTGTGTTATCAAAGTCAT 178
|||| || |||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 114 AATTCTT-AGTCAACTTCCAACTGCTGAAGCTGTTAGTACTTCTGTGTTATCAAAGTCAT 172
Query 179 GGAGGAACATGTGGACAAACATCACAGAGTTACATTTTGATGATCCAAAGCAGAGGGATC 238
||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 173 GGAAGAACATTTGGACAAACATCACAGATTTACATTTTGATGATACAAAGCAGAGGGATC 232
Query 239 CGAGTGATTCTCGGTTTACTGACTTCGTTGAGCGTGTGCTTAGCGACATTGGAAGTCCGC 298
||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 233 CGAGTGATTCTCGATTTACTGACTTCGTTGAGCGTGTGGTTGGCGACATTGGAAGTCCGC 292
Query 299 AGATTAACAGTTTCCATCTACGTTCTGTTAATTCTTACGATGAGACTCTTCTCTTCTCGT 358
| |||| ||||||| ||||| | ||||||||| ||| |||||||||||||||||||||||
Sbjct 293 ACATTAGCAGTTTCTATCTATGCTCTGTTAATACTTTCGATGAGACTCTTCTCTTCTCGT 352
Query 359 GGTTATCAAAGGTACTAAAGCGCAATCTTCAGAGACTTGTTGTCACTTGCAACGATCTTG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 353 GGTTATCAAAGGTACTAAAGCGCAATCTTCAGAGACTTGTTGTCACTTGCAACGATCTAG 412
Query 419 AAATCATCAATTTTTCTCCTCTTTTTCCTAGTCTTGTTTCGCTTGTGGAGTTAAGACTCC 478
| ||||||| ||||||| | |||||||||||| |||||||||||||||||||||| ||||
Sbjct 413 AGATCATCAGTTTTTCTTCACTTTTTCCTAGTTTTGTTTCGCTTGTGGAGTTAAGGCTCC 472
Query 479 GTACAAAGAGCATTCTTGACATTTCGGCTCCTGCTCTTCTCCCGAACCTTAAGTTCTTTA 538
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |||
Sbjct 473 GTACAAAAAGCATTCTTGACATTTCGGCTCCCGCTATTCTCCCGAACCTTAAGTTCCTTA 532
Query 539 GTCTCGAGGATGCTAGAATCTTCAACATGTCTTCTGTCTCAAAGAACCTCGTTCTGAACT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTCTCGAGGATGCTAGAATCTTCAACATGTCTTCTGTCTCAAAGAACCTCGTTCTGAACT 592
Query 599 TTCCTGTCCTGGAAACTTTTGAAGCCTCTTATTGCTGCTACTTTAGAACCGATACTGTGA 658
|||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 593 TTCCTGTCTTGGAAACTTTTGAAGCCTCTTATTGCCGCTGCTTTAGAACCGATACTGTGA 652
Query 659 TCCTAGATTCTCCGAT-GCTCAGGATCTTTGAGATGTTTAAGTGTACCTCTGAACATGTA 717
|| |||| ||||| || ||| ||||||||||||||||| |||||||| |||||||| |||
Sbjct 653 TCATAGACTCTCC-ATTGCTTAGGATCTTTGAGATGTTCAAGTGTACATCTGAACACGTA 711
Query 718 CCGAAT--T-CTGAAGTGTGTAAGATCAGGGTGTTAGCTTCAAAGCTTGAGAAAATTACA 774
|| ||| | || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 CCTAATCCTTCTCAAGTGTGTAAGATCAGGGTGTTAGCTTCAAAGCTTGAGAAAATCACA 771
Query 775 TTCTCCGGGGACGATTCCCGAAAGATTCGTCTGTCTTTTCCACCGTCTTTACCTGATGCT 834
|||| || ||||| ||||||| || | |||||||||||||||||||||||||||||||
Sbjct 772 TTCTGTGGAGACGAACCCCGAAAAATCCATCTGTCTTTTCCACCGTCTTTACCTGATGCT 831
Query 835 TATCTAGCCCTCAGCAAATCGGAGTGGCCCAAGAAGTTTCTACATAGCTTCACATGCGTG 894
||||| |||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 832 TATCTTGCCCTCAGCAGATCCGAGTGGCCCAAGACGTTTCTACGTAGCTTCACATGCGTG 891
Query 895 AATAGTTTGGCTCTCGAGCTTAGCAAGGATTTTCATGTGATCGCAGTACCCAAATTCAGA 954
| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 892 ACGAGTTTGGCTCTCGTGCTTAGCAAGGATTTTCATGTGATGGCAGTACCCAAATTCAGC 951
Query 955 CAGTTGGTTTACCTGCATTTGATATACGACATGACACAACATTGTAAATTAATTCAGTTC 1014
|||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 952 CAGTTGGTATACCTGCATTTGATATACGACATGACACAACATTTTAGATTAATGCAGTTC 1011
Query 1015 CTCGAATCCGCACCAATACTCGAGATGCTCAGCATCCGCGACCTGACATCTCCTCGTTCA 1074
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTTAAATCCGCACCAATACTCGAGATGCTCAGCATCCGCGACCTGACATCTCCTCGTTCA 1071
Query 1075 ACCCCTACTACAAAGTCCTTGAAGGAACTACGTTCAGAAGAATCACCGGATTGCGTTAGA 1134
|| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 1072 ACACCTACTGCAAAGTCCTTGAAGGAACTACGTTCAGTAGAATCTCCGGATTGCGTTACA 1131
Query 1135 ACAATGCTCAAAATCCTACAAATCAGGAATTTTAAGCCAAACAGGCTGCAGATATCAGTG 1194
|||||||||||| |||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1132 ACAATGCTCAAAGTCCTGCAGATCAGGAACTTTAAGCCAAACAGGCTACAGATATCAGTG 1191
Query 1195 TTGAGGTACGTGTTGGACAACGCTGAGATTCTTGGATCAGTCATCCTTTCCTCGCCCAAT 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TTGAGGTACGTGTTGGACAATGCTGAGATTCTTGGATCAGTCATCCTTTCCTCGCCCAAT 1251
Query 1255 CCAATCACAGAAGAAGCTAAAGCAAGAATCTTGTCTTATCCTAAAGCCTCACCTCATGCC 1314
|||||||||||||||| ||||||||||||||| ||| |||||||||||| || ||||||
Sbjct 1252 CCAATCACAGAAGAAGAGAAAGCAAGAATCTTGGCTTTTCCTAAAGCCTCTCCCCATGCC 1311
Query 1315 TCTGTCTTCTTCGAGTGA 1332
|||||||| ||||| |||
Sbjct 1312 TCTGTCTTGTTCGAATGA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5