BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478885
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14730.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2983 0.0
> AT3G14730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:4949385-4951346 REVERSE LENGTH=1962
Length=1962
Score = 2983 bits (1615), Expect = 0.0
Identities = 1852/1967 (94%), Gaps = 13/1967 (1%)
Strand=Plus/Plus
Query 1 ATGACCGTTTTGTTTCTACGGATCAAGATTCAAAATTTG-TCTTCCGGAGTTCTGAAG-C 58
|||||||| | ||||||||||||| |||||||||| ||| ||| ||||| || || ||
Sbjct 1 ATGACCGTCTCGTTTCTACGGATCGAGATTCAAAA-TTGTTCTGCCGGAATTTTG-AGAT 58
Query 59 TTCTCCCACGGAACCCAGATTTCTTCGCAGCTATAAA---TCCTTCTACTTTCGCATCTT 115
|||||||||||||||||||||| |||||||||||||| | ||||| |||| |||||||
Sbjct 59 TTCTCCCACGGAACCCAGATTTATTCGCAGCTATAAAGCCTTCTTCTGCTTTAGCATCTT 118
Query 116 TATATTCGACAGTTTCTGGGCAAATCGAAGAACACCCGAAGAGATACGAGCACCACAATG 175
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 TATATTCGACTGTTTCTGGGCAAATCGAAGAAAACCCGAAGAGATACGAGCACCACAATG 178
Query 176 TTGCTACATCTATCGCCACATTGCAACGGTGTGCACAGAGAAAAGATTCCGTTTCCGGCC 235
||||||||| |||||||||||||||||| ||||||||| | ||||||| |||||||||||
Sbjct 179 TTGCTACATGTATCGCCACATTGCAACGCTGTGCACAGCGCAAAGATTACGTTTCCGGCC 238
Query 236 AACAGATCCACGGTTTCATGGTTAGAAAAGGGTTTCTCGATGATTCTCCACGCGCCGTCA 295
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 239 AACAGATCCACGGTTTCATGGTTAGAAAAGGGTTTCTGGATGATTCGCCACGCGCCGGCA 298
Query 296 CGAGCCTCGTTAACATGTACGCTAAGTGTGGTCTTATGCGGCGTGCGGTGTTGGTCTTTG 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 CGAGCCTCGTTAACATGTACGCTAAGTGTGGTCTCATGCGGCGTGCGGTGTTGGTCTTTG 358
Query 356 GTGGATCAGAACGCGATGTGTTTGGTTATAACGCTTTGATTTCTGGGTTTGTGGTAAATG 415
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 359 GTGGATCCGAACGCGATGTATTTGGTTACAACGCTTTGATTTCTGGGTTTGTGGTAAATG 418
Query 416 GGTCTCCTTTGGATGCGATGGATATGTACAGAGAAATGAGAGCTAAAGGGATTTTACCTG 475
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 419 GGTCTCCTTTGGATGCGATGGAGACGTACAGAGAAATGAGAGCTAATGGGATTTTACCTG 478
Query 476 ATAAGTATACATTTCCTAGTTTGCTAAAAGGAAGCGATGCTATGGAGGTTTCTGATGTAA 535
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 479 ATAAGTATACATTTCCTAGTTTGCTAAAAGGAAGCGATGCTATGGAGCTTTCTGATGTTA 538
Query 536 AGAAGGTTCATGCATTGGCGTTTAAACTTGGGTTTGTA-TCCGATTGTTATGTAGGGAGT 594
|||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 539 AGAAGGTTCATGGATTGGCGTTTAAACTTGGGTTTG-ATTCCGATTGTTATGTGGGGAGT 597
Query 595 GCCTTAGTTACTTCTTACTCGAAGTTCATGTCAGTGGAGGATGCTCAGAAGGTGTTCGAT 654
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGCTTAGTTACTTCTTACTCGAAGTTCATGTCAGTGGAGGATGCTCAGAAGGTGTTCGAT 657
Query 655 GAATTGCCTGATAGAGATGATAGTGTGCTTTGGAATGCTTTGGTTAATGGGTATTCACAG 714
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 658 GAATTGCCTGATAGAGATGACAGTGTGCTTTGGAATGCTTTAGTTAATGGGTATTCACAG 717
Query 715 ATTTTTAGATTTGAGGATGCTTTAATAGTCTTTAGTAAAATGCGTGAAGAAGGTGTAGCT 774
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 718 ATTTTTAGATTTGAGGATGCTTTATTAGTCTTTAGTAAAATGCGTGAAGAAGGTGTAGGT 777
Query 775 ATGAGTAGGCATACCATCACTAGCGTCTTATC-GTCATTTACTGTGTCAGGGGATCTTGA 833
|||| ||||||||||| || ||||||||||| | |||||||||| ||||||||| ||||
Sbjct 778 GTGAGCAGGCATACCATTACAAGCGTCTTATCAG-CATTTACTGTTTCAGGGGATATTGA 836
Query 834 CAACGGTAGGTCAATCCATGGTCTTGCGGTGAAAATGGGATTC-GATTCTGGTATTGTTG 892
||||||||||||||||||||| ||||||||||||| |||| || | ||||| ||||||||
Sbjct 837 CAACGGTAGGTCAATCCATGGCCTTGCGGTGAAAACGGGA-TCTGGTTCTGATATTGTTG 895
Query 893 TGTCAAATGCATTGATTGATATGTATGGAAAGAGTAAATGGCTAGAAGAGGCAAACAGTA 952
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 896 TGTCAAATGCATTGATTGATATGTATGGGAAGAGTAAATGGCTAGAAGAGGCAAACAGTA 955
Query 953 TATTTGAAGCAATGGATGAGAGAGACCTGTTTACTTGGAACTCTGTTTTGTGTGTTCATG 1012
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 956 TATTCGAAGCAATGGATGAGAGAGACCTGTTTACATGGAACTCTGTTTTATGTGTTCATG 1015
Query 1013 ACTACTGTGGTGATCATGATGGAACCTTAGCTCTTTTCGAAACGATGCTTTGTTCTGGAA 1072
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1016 ACTACTGTGGTGATCATGATGGAACATTAGCTCTTTTCGAAAGGATGCTTTGTTCTGGAA 1075
Query 1073 TCCGACCTGATATTGTCACATTGACAACCGTTCTACCCACTTGCGGTCGTCTAGCTTCAC 1132
|||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1076 TCCGACCTGATATTGTTACATTGACAACTGTTCTGCCCACCTGCGGTCGTCTAGCTTCAC 1135
Query 1133 TGAAGCAAGGAAGAGAGATTCATGGCTACATGATCGCCAGTGGACTTCTAAACCGCAAAT 1192
||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1136 TGAGGCAGGGCAGAGAGATTCATGGGTACATGATCGTCAGTGGACTTCTAAACCGCAAAT 1195
Query 1193 CTAGTAATGGATTCATACATAACTCTTTAATGGATATGTACGTGAAATGCGGGGACTTGA 1252
||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1196 CTAGTAATGAATTTATACATAATTCTTTGATGGATATGTACGTGAAATGCGGGGACTTGA 1255
Query 1253 GGGACGCTCGGATGGTTTTCGACTCGATGAGGGTTAAAGACTCAGCTTCTTGGAATATCA 1312
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1256 GGGACGCTCGGATGGTTTTCGACTCAATGAGGGTTAAAGACTCAGCTTCTTGGAATATTA 1315
Query 1313 TGATTAATGGTTATGGTGTGCAGAGCTGCGGTGAGTTAGCTTTGGATATGTTTTCATGTA 1372
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGATTAATGGCTATGGTGTGCAGAGCTGCGGTGAGTTAGCTTTGGATATGTTTTCATGTA 1375
Query 1373 TGTGCAGAGCCGGTGTCAAACCCGATGAAATCACATTTGTTGGGTTGCTACAAGCGTGTA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGTGCAGAGCCGGTGTCAAACCCGATGAAATCACATTTGTTGGGTTGCTACAAGCGTGTA 1435
Query 1433 GCCACTCAGGTTTTGTGAACGAAGGGCGAAATTTTTTGGCACAGATGGAGACGTTATATA 1492
||||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1436 GCCACTCTGGTTTTTTGAACGAAGGGAGAAATTTTTTGGCACAGATGGAGACGGTATATA 1495
Query 1493 ACATTCTCCCAACAAGTGATCACTACGCTTGTGTAATAGACATGCTTGGCCGTGCAGACA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ACATTCTCCCAACAAGTGATCACTACGCTTGTGTAATAGACATGCTTGGCCGTGCAGACA 1555
Query 1553 AGCTGGAGGAAGCATATGATTTAGCGATATCGATGCCCATTTGCGATAATCCTGTAGTCT 1612
|||| |||||||||||||| ||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1556 AGCTAGAGGAAGCATATGAGTTAGCAATATCAAAGCCCATTTGCGATAATCCTGTAGTCT 1615
Query 1613 GGAGGTCAATATTGTCATCTTGTCGTCTCCACGGGAACAAAGATCTTGCACTGGTTGCAG 1672
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1616 GGCGGTCAATATTGTCATCTTGTCGTCTCCACGGGAACAAAGATCTCGCACTGGTGGCAG 1675
Query 1673 GAAAGCGGCTATATGAGCTTGAGCCAGAGCATTGCGGCGTTTATGTATTAATGTCTAATG 1732
||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1676 GAAAGCGGCTACATGAGCTCGAGCCAGAGCATTGTGGCGGTTATGTATTAATGTCTAATG 1735
Query 1733 TTTATGTGGAAGCTAAGAAGTATGAGGAAGTCTTGGACGTTAGAGACACAATGAAAGAGC 1792
|||||||||||||| |||||| |||||||| ||||||||||||||| |||||| | | |
Sbjct 1736 TTTATGTGGAAGCTGGGAAGTACGAGGAAGTGTTGGACGTTAGAGACGCAATGAGACAAC 1795
Query 1793 AGAATGTGAAGAAGACACCAGGTTGCAGCTGGATTGGGCTCCAGAACGGTGTTCACACGT 1852
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1796 AGAATGTGAAGAAGACACCAGGTTGCAGCTGGATTGTGCTCAAGAACGGTGTTCACACGT 1855
Query 1853 TCTTTACTGGCGATCAGACTCACCCGGAATTTGAATCTATCCACGGTTGGTTAAGCCTAT 1912
||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1856 TCTTTACCGGCAATCAGACTCACCCGGAATTTAAATCTATCCACGATTGGTTAAGCCTAG 1915
Query 1913 TGATTTCTCATATGCATGGTCATGAGTATATGACGCTCGACGACTAA 1959
|||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1916 TGATTTCTCATATGCACGGTCATGAGTATATGACGGTCGACGACTAA 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5