BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478888
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14750.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1604 0.0
> AT3G14750.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G67170.1);
Has 4036 Blast hits to 3091 proteins in 519 species: Archae
- 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants
- 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink).
| chr3:4953576-4955656 REVERSE LENGTH=1468
Length=1468
Score = 1604 bits (868), Expect = 0.0
Identities = 1005/1070 (94%), Gaps = 14/1070 (1%)
Strand=Plus/Plus
Query 140 CTCGAATTTACCAGAAATTGAAACTAGAATTGCGCTTAT-CAG-AGTGTTAAACATTGAG 197
||||||||| |||| || ||||||||||||| | || | | | ||| || |||||| ||
Sbjct 223 CTCGAATTTTCCAGGAAGTGAAACTAGAATT-TGATTCTGC-GTAGTATTGAACATTAAG 280
Query 198 ATAATGTCTGGAAGAAATCGTGGACCTCCTCCTCCTTCAGTGAAAGGTGGATCTTACAAT 257
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct 281 ATAATGTCTGGAAGAAATCGTGGACCTCCTCCTCCATCAATGAAAGGTGGATCTTACAGT 340
Query 258 GGCTTACAAGCTCCGGTTCATCAACCGCCTTTTGTTAGAGGGTTAGGAGGAGGACCTGTG 317
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 341 GGTTTACAAGCTCCGGTTCATCAACCGCCTTTCGTTAGAGGCTTAGGAGGAGGACCAGTG 400
Query 318 ---CCTCCTCCTCGTCCTTCTATGATTGATGATAGTAGAGAACCTCAATTTAGAGTGGAT 374
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 401 CCTCCTCCTCCTCATCCTTCTATGATTGATGATAGTAGAGAACCTCAATTTAGAGTAGAT 460
Query 375 GCAAGAGGTCTTCCTCCACAGTTTTCGATTTTGGAGGATCGACTCGCTGCTCAGAATCAA 434
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 461 GCAAGAGGTCTTCCTCCACAATTTTCGATTCTGGAGGATCGTCTCGCTGCTCAGAATCAA 520
Query 435 GATGTGCAGGGTTTACTTGCTGATAACCAGAGGCTGGCTGCTACTCATGTTGCGCTTAAA 494
||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 521 GATGTTCAGGGCTTACTCGCTGATAACCAGAGACTGGCTGCGACTCATGTTGCGCTTAAA 580
Query 495 CAGGAGCTAGAAGTTGCTCAGCATGAATTGCAAAGAATGATGCATTACATTGATTCCTTG 554
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 581 CAGGAGTTAGAAGTTGCTCAGCATGAATTGCAAAGAATAATGCATTACATTGATTCCTTG 640
Query 555 AGAGCTGAGGAAGAGATTATGATGAGGGAGATGTATGATAAATCTATGCGATCCGAAATG 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGAGCTGAGGAAGAGATTATGATGAGGGAGATGTATGATAAATCTATGCGATCCGAAATG 700
Query 615 GAATTACGTGAAGTCGATGCTATGCGAGCTGAGATTCAAAAGGTCCGTGCGGATATCAAA 674
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 701 GAATTGCGTGAAGTCGATGCTATGCGAGCTGAGATTCAAAAGATCCGTGCGGATATCAAA 760
Query 675 GAGTTTACTTCAGGTAGGCAGGAACTAACGAGTCAGGTTCACGTGATGACTCAAGATTTG 734
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 761 GAGTTTACTTCAGGTAGACAGGAACTAACGAGTCAGGTTCACCTGATGACTCAAGATTTA 820
Query 735 GCTAGACTTACAGCAGATTTGCAGCAGATACCAACATTAACTGCAGAAATTGAGAACACA 794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 821 GCTAGACTTACAGCAGATTTGCAGCAGATACCAACGTTAACTGCAGAAATTGAGAACACA 880
Query 795 AAGCAAGAGCTGCAACGCGCAAGAGCGGCTATTGATTATGAGAAGAAAGGGTATGCGGAA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 881 AAGCAAGAGCTGCAACGCGCAAGAGCGGCTATTGATTATGAGAAGAAAGGGTACGCGGAA 940
Query 855 AACTACGAGCATGGCAAGATTATGGAGCATAAATTAGTCGCAATGGCTCGGGAACTGGAG 914
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 941 AACTACGAGCATGGCAAAATTATGGAGCATAAATTAGTTGCAATGGCTCGGGAACTGGAG 1000
Query 915 AAGCTTCGAGCAGAGATTGCTAACTCAGAAACGAGGGCTCATGC-AGCTGGTCCTGTTGG 973
||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||
Sbjct 1001 AAGCTTCGAGCAGAGATTGCTAACTCAGAAACGAGTGCTTATGCTAA-TGGTCCTGTTGG 1059
Query 974 GAATCCTGGTGGAGTTGCTTATGGTGGTGGCTATGGAAATCCTGAGGCTGGGTATCCTGT 1033
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1060 GAATCCTGGTGGAGTTGCTTATGGTGGTGGATATGGAAATCCTGAGGCTGGGTATCCTGT 1119
Query 1034 GAATCCTTATCAACCCAACTATGTCATGAATCCAGCACAAGCAGGCGTTGTTGGCTATTA 1093
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1120 GAATCCTTATCAACCCAACTATACCATGAATCCAGCACAAACAGGCGTTGTTGGCTATTA 1179
Query 1094 TCCTCCTCCATACGGACCGCAGGCTGCGTGGGCTGGTGGCTATGATCCGCAACAAcagca 1153
||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1180 TCCTCCTCCTTACGGACCACAGGCTGCGTGGGCTGGTGGCTACGATCCGCAACAGCAACA 1239
Query 1154 gcagcagcagcagc-agcCACCA---CAAGGACATCGATGAAAAAGTCAA 1199
||||||||||| || | |||| | ||||||||||||||||||||||||
Sbjct 1240 GCAGCAGCAGCCGCCA-CCACAAGGACAAGGACATCGATGAAAAAGTCAA 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5