BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478892
Length=2285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14790.1 | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3 |... 3513 0.0
AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthes... 918 0.0
> AT3G14790.1 | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3
| chr3:4964155-4967075 FORWARD LENGTH=2348
Length=2348
Score = 3513 bits (1902), Expect = 0.0
Identities = 2152/2271 (95%), Gaps = 23/2271 (1%)
Strand=Plus/Plus
Query 1 TTTTATTTATTTCCATTGATCTCTCCCCTCTCCTCGAATTTTCCCTCCTTTTAAACCATC 60
||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||
Sbjct 42 TTTTATTTATTTCCATTGATCTCTCTCCTCTCCTCGATTTTTCCCTCC-TTTAATCCATC 100
Query 61 TCTGCATATATTCTTCAAGCTTAAGGTTTGATCTTCATC-TGAAATC-G-ATCCGGTACG 117
||||| ||||||||||||||| || || ||||||||| || ||| | || || | ||
Sbjct 101 TCTGC--ATATTCTTCAAGCTT--GGGTTCATCTTCATCTTG--ATCTGAAT-CGATCCG 153
Query 118 ATGGCTACATATAAGCCCAAGAACATCCTCATCACTGGTGCTGCTGGATTCATAGCCTCC 177
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 154 ATGGCTACATATAAGCCTAAGAACATCCTCATCACTGGGGCTGCTGGATTCATAGCCTCT 213
Query 178 CATGTTGCCAACAGACTAGTTCGTAGCTACCCTGACTACAAAATCGTTGTGCTTGACAAG 237
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 214 CATGTTGCTAACAGACTAGTTCGCAGCTACCCTGACTACAAAATTGTTGTGCTTGACAAG 273
Query 238 CTTGATTACTGTTCTAACCTGAAAAACCTTAATCCTTCTAAATCCTCTCCTAACTTCAAG 297
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 274 CTTGATTACTGTTCTAATCTGAAGAACCTTAATCCTTCTAAATCCTCTCCCAACTTCAAG 333
Query 298 TTTGTGAAAGGAGATATCGCCAGTGCTGACCTCGTCAACTACCTTCTCATCACTGAAGAA 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 334 TTTGTGAAAGGAGATATCGCCAGTGCTGATCTCGTCAACTACCTTCTCATCACTGAAGAA 393
Query 358 ATCGATACCATTATGCACTTTGCTGCTCAAACCCATGTTGACAATTCTTTCGGTAATAGC 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ATCGACACCATTATGCACTTTGCTGCTCAAACCCATGTTGACAATTCTTTCGGTAATAGC 453
Query 418 TTTGAGTTTACTAAGAATAATATTTATGGTACCCATGTTCTTCTGGAGGCTTGTAAAGTC 477
||||||||||| ||||| |||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 454 TTTGAGTTTACCAAGAACAATATTTATGGTACCCATGTCCTTTTGGAAGCTTGTAAAGTC 513
Query 478 ACTGGCCAGATCAGGAGGTTCATCCATGTGAGTACTGATGAGGTCTATGGAGAGACTGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ACTGGCCAGATCAGGAGGTTCATCCATGTGAGTACTGATGAGGTCTATGGAGAGACTGAT 573
Query 538 GAGGATGCTTCTGTGGGAAATCACGAGGCTTCTCAGTTGCTACCGACTAATCCATACTCT 597
||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 574 GAGGATGCTTCAGTGGGTAATCACGAGGCTTCTCAGTTGCTCCCAACTAATCCATACTCC 633
Query 598 GCTACTAAAGCTGGAGCTGAGATGCTTGTTATGGCATATGGTAGATCATATGGGTTGCCG 657
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 GCCACTAAAGCTGGAGCTGAGATGCTTGTCATGGCATATGGTAGATCATATGGGTTGCCG 693
Query 658 GTTATAACAACTCGCGGGAACAATGTTTATGGTCCTAACCAGTTTCCTGAAAAGTTGATT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GTTATAACAACTCGCGGGAACAATGTTTATGGTCCTAACCAGTTTCCTGAAAAGTTGATT 753
Query 718 CCTAAGTTCATCCTCTTGGCTATGAATGGGAAGCCTCTCCCAATCCACGGAGATGGATCT 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 754 CCTAAGTTCATCCTCTTGGCCATGAATGGGAAGCCTCTCCCAATCCACGGAGATGGATCT 813
Query 778 AATGTGAGAAGCTACCTCTACTGCGAAGATGTTGCCGAGGCATTTGAGGTTGTTCTTCAC 837
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 814 AATGTGAGAAGTTATCTCTACTGCGAAGATGTTGCTGAGGCATTTGAGGTTGTTCTTCAC 873
Query 838 AAAGGGGAAGTTAACCATGTCTACAATATAGGGACAACGAGAGAAAGGAGAGTGATCGAC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 874 AAAGGGGAAGTTAACCATGTCTACAATATAGGGACAACGAGAGAAAGGAGAGTGATTGAT 933
Query 898 GTGGCTAATGACATCAGTAAACTCTTTGGGATAGACCCTGACTCCACCATTCAGTTTGTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 934 GTGGCTAATGACATCAGTAAACTCTTTGGGATAGACCCTGACTCCACCATTCAGTATGTG 993
Query 958 GAGAACCGCCCATTCAATGACCAGAGGTACTTTCTGGATGACCAGAAGCTGAAGAAATTG 1017
|| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 994 GAAAACCGGCCATTCAATGACCAGAGGTACTTCCTCGATGACCAGAAGCTGAAGAAATTA 1053
Query 1018 GGATGGTGTGAGCGAACCAATTGGGAAGAAGGACTGAGGAAGACAATGGAATGGTACACT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1054 GGATGGTGTGAGCGAACCAATTGGGAAGAAGGACTGAGGAAGACAATGGAATGGTATACT 1113
Query 1078 GAGAACCCTGAGTGGTGGGGAGATGTTTCTGGAGCTCTGCTTCCTCATCCACGGATGCTG 1137
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1114 GAGAACCCTGAGTGGTGGGGCGATGTTTCTGGAGCTCTGCTTCCTCATCCACGGATGTTG 1173
Query 1138 ATGATGCCCGGTGACCGACACTCTGACGGCTCTGACGAGCACAAGGACT-CGGATGGTAA 1196
|||||||||||||||||||||||||| |||||||||||||||||| | | | ||||||||
Sbjct 1174 ATGATGCCCGGTGACCGACACTCTGATGGCTCTGACGAGCACAAGAA-TGCAGATGGTAA 1232
Query 1197 TCAGACATTCACGGTGGTTACTCCCACCAAGGCTGGT-GTTTCCGGAGACAAAAGATCCT 1255
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1233 TCAGACATTCACGGTGGTTACTCCCACCAAGGCTGGTTGTT-CCGGAGACAAAAGATCCT 1291
Query 1256 TAAAGTTCCTCATCTATGGGAAGACTGGGTGGCTCGGTGGTCTTCTGGGAAAACTATGTG 1315
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TGAAGTTCCTCATCTATGGGAAGACTGGGTGGCTCGGTGGTCTTCTGGGAAAACTATGTG 1351
Query 1316 AGAAGCAAGGGATTTCATACGAGTATGGAAAAGGGAGACTAGAAGACAGGGCTTCTCTCA 1375
|||| ||||||||| | ||||||||||||||||| |||||||| || || ||||||||||
Sbjct 1352 AGAAACAAGGGATTCCTTACGAGTATGGAAAAGGAAGACTAGAGGATAGAGCTTCTCTCA 1411
Query 1376 TGGCCGATATTCGCAGCATCAAACCAAGTCATGTCTTCAATGCCGCCGGTTTAACTGGCA 1435
| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1412 TCGCAGATATTCGCAGCATCAAACCAAGTCATGTCTTCAACGCCGCTGGTTTAACTGGGA 1471
Query 1436 GACCCAATGTTGACTGGTGTGAATCTCACAAAACCGAAACCATCCGAGTCAATGTTGCTG 1495
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1472 GACCCAATGTTGACTGGTGTGAATCTCACAAAACTGAAACCATCCGAGTCAACGTTGCTG 1531
Query 1496 GAACTTTGACTCTGGCAGATGTTTGCAGAGAGAATGATCTATTGATGATGAACTTTGCCA 1555
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1532 GAACTTTGACTCTTGCAGATGTTTGCAGAGAGAATGATCTGTTGATGATGAACTTTGCCA 1591
Query 1556 CCGGTTGTATATTTGAGTATGACGCTGCACATCCAGAAGGTTCAGGGATTGGTTTTAAGG 1615
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CTGGTTGTATATTCGAGTATGACGCTGCACATCCAGAAGGTTCAGGGATTGGTTTTAAGG 1651
Query 1616 AAGAAGATAAACCTAATTTCACTGGTTCTTTCTACTCAAAAACAAAGGCAATGGTTGAAG 1675
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1652 AAGAAGATAAACCGAATTTCACTGGTTCTTTCTACTCAAAAACAAAGGCAATGGTGGAAG 1711
Query 1676 AGCTTCTAAGAGAATTTGACAACGTATGCACTTTGAGAGTGCGGATGCCAATCTCATCCG 1735
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1712 AGCTTCTAAGAGAATTTGACAACGTATGCACCTTGAGAGTGCGGATGCCAATCTCATCTG 1771
Query 1736 ACTTAAATAACCCGCGAAACTTTATCACGAAGATCTCGCGTTACAACAAAGTGGTGAACA 1795
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1772 ACTTAAATAACCCGCGAAACTTCATCACGAAGATCTCGCGTTACAACAAAGTGGTGAACA 1831
Query 1796 TCCCAAACAGCATGACCATACTAGACGAACTCTTGCCAATCTCAATTGAGATGGCGAAGA 1855
| ||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 1832 TTCCAAACAGCATGACCATACTAGATGAACTCTTACCAATCTCGATCGAGATGGCGAAGA 1891
Query 1856 GGAACTTAAGGGGAATATGGAACTTCACCAATCCAGGAGTGGTGAGCCACAACGAGATAC 1915
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 GGAACCTAAGGGGAATATGGAACTTCACCAATCCAGGAGTGGTGAGCCACAACGAGATAT 1951
Query 1916 TAGAGATGTACAAGAGTTACATTGAGCCGGATTTCAAATGGTCCAACTTCAATTTGGAAG 1975
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1952 TAGAGATGTACAAGAGTTACATCGAGCCTGATTTCAAATGGTCCAACTTCAATTTGGAAG 2011
Query 1976 AACAGGCTAAGGTCATTGTCGCACCACGGAGCAACAACGAGATGGATGGTTCTAAGCTCA 2035
||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||
Sbjct 2012 AACAGGCTAAGGTCATTGTTGCTCCACGGAGCAACAACGAGATGGATGGTGCCAAGCTCA 2071
Query 2036 GCAAGGAGTTTCCAGAGATGCTTTCCATCAAAGATTCGTTGATCAAATACGTCTTTGAAC 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2072 GCAAGGAGTTTCCAGAGATGCTTTCCATCAAAGATTCGTTGATCAAATACGTCTTCGAAC 2131
Query 2096 CTAACAAGAGAACGTAAAACACAGACACACACAT--ACTTCCCCTCTCTCTGTTCACTAT 2153
||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 2132 CTAACAAGAGAACGTAAAACACAGACACACACACGCACTTCCCCGCTCTGTGTTCACTAT 2191
Query 2154 AATGTTTCTACAATAATTTTATCATATGATTCATTTACTCT-TTTTT--GCATTCTACGC 2210
||||||||||| ||| ||||||| | |||||||||||||| ||||| ||||||||||
Sbjct 2192 AATGTTTCTACTATAGTTTTATC-T--GATTCATTTACTCTCTTTTTTTGCATTCTACGA 2248
Query 2211 CTTACATGTAGCTCTCTTCACTCATTCTACTTCACTACACATCTTTGTTTT 2261
||| ||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 2249 CTTGCATGTAGCTGTCTTCACTCATTCTACGTCACAACACATCTTTGTTTT 2299
> AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis
1 | chr1:29549649-29552438 FORWARD LENGTH=2463
Length=2463
Score = 918 bits (497), Expect = 0.0
Identities = 873/1053 (83%), Gaps = 32/1053 (3%)
Strand=Plus/Plus
Query 133 CCCAAGAACATCCTCATCACTGGTGCTGCTGGATTCATAGCCTCCCATGTTGCCAACAGA 192
||||||||||| |||||||| || |||||||| ||||| || || ||||| |||||||||
Sbjct 238 CCCAAGAACATTCTCATCACCGGAGCTGCTGGTTTCATTGCGTCTCATGTCGCCAACAGA 297
Query 193 CT-AGTTCGTAGCTACCCTGACTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTC 251
|| | | || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCA-TACGAAGCTATCCTGATTACAAAATCGTTGTGCTTGACAAGCTTGATTACTGTTC 356
Query 252 TAACCTGAAAAACCTTAATCCTTCTAAATC-CTCTCCTAACTTCAAGTTTGTGAAAGGAG 310
|| || || || || ||||||||||| | |||||| |||||||||||||| ||||| |
Sbjct 357 AAATCTCAAGAATCTCAATCCTTCTAAG-CACTCTCCGAACTTCAAGTTTGTCAAAGGTG 415
Query 311 ATATCGCCAGTGCTGACCTCGTCAA-CTACCTTCTCATCACTGAAGAAATCGATACCATT 369
||||||| ||||||||| | || || | | |||||||||||||||| || || |||||
Sbjct 416 ATATCGCTAGTGCTGACTTGGTGAATC-ATCTTCTCATCACTGAAGGTATTGACACCATC 474
Query 370 ATGCACTTT-GCTGCTCAAACCCATGTTGACAATTCTTTCGGTAATAGCTTT-GAGTTTA 427
||||| ||| |||||||| || || || |||||||| |||||||| || ||| |||||||
Sbjct 475 ATGCA-TTTCGCTGCTCAGACTCACGTCGACAATTCCTTCGGTAACAG-TTTCGAGTTTA 532
Query 428 CTAAGAATAATATTTATGGTACCCATGTTCTTCTGGAGGCTTGTAAAGTCACTGGCCAGA 487
||||||||||||| ||||| || ||||| ||||| |||||||||||||| ||||| ||||
Sbjct 533 CTAAGAATAATATCTATGGAACTCATGTCCTTCTTGAGGCTTGTAAAGTTACTGGTCAGA 592
Query 488 TCAGGAGGTTCATCCATGTGAGTACTGATGAGGTCTATGGAGAGACTGATGAGGATGCTT 547
| |||||||| || ||||| ||||||||||| || ||||| || |||||||||||||||
Sbjct 593 TTAGGAGGTTTATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATGAGGATGCT- 651
Query 548 CT-GTGGGAAATCACGAGGCTTCTCAGTTGCTACCGACTAATCCATACTCTGCTACTAAA 606
|| || || || || |||||||||||| |||| ||||| ||||| |||||||| || |||
Sbjct 652 CTTGTTGGTAACCATGAGGCTTCTCAGCTGCTTCCGACGAATCCTTACTCTGCCACGAAA 711
Query 607 GCTGGAGCTGAGATGCTTGTTATGGCATATGGTAGATCATATGGGTTGCCGGTTATAACA 666
||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||
Sbjct 712 GCTGGTGCTGAGATGCTTGTTATGGCTTATGGTAGATCTTATGGTTTGCCTGTTATTACC 771
Query 667 ACTCGCGGGAACAATGTTTATGGTCCTAACCAGTTTCCTGAAAAGTTGATTCCTAAGTTC 726
||||| ||||| || || ||||| || || ||||||||||| ||||||||||||||||||
Sbjct 772 ACTCGTGGGAATAACGTCTATGGACCGAATCAGTTTCCTGAGAAGTTGATTCCTAAGTTC 831
Query 727 ATCCT-CTTGGCTATGA-ATGGGAAGCCTCT-CCCAATCCACGGAGATGGATCTAATGTG 783
|| | || ||| |||| | ||| || ||| |||| || | ||||||||||| |||||
Sbjct 832 ATTTTGCT-GGCAATGAGA-GGGCAGGTTCTTCCCATTC-ATGGAGATGGATCAAATGTC 888
Query 784 AGAAGCTACCTCTACTGCGAAGATGTTGCCGAGGCATTTGAGGTTGTTCTTCACAAAGGG 843
|| |||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 889 AGGAGCTACCTCTACTGTGAAGACGTTGCTGAGGCTTTTGAAGTTGTTCTTCACAA-GGG 947
Query 844 -GAAGTTAACCATGTCTACAATATAGGGAC-AACGAGAGAA-AGGAGAGTGA-TCGACGT 899
|||||| |||||| |||||||| ||||| || || || | |||||||||| | || ||
Sbjct 948 AGAAGTTGGCCATGTTTACAATATTGGGACGAA-GA-AGGAGAGGAGAGTGAAT-GATGT 1004
Query 900 GGCTAATGACATCAGTAAACTCTTTGGGATAGACCCTGACTCCACCATTCA-GTTTGTGG 958
|| || |||||| | |||||||| || |||||||| | | ||| || |||||| |
Sbjct 1005 TGCCAAAGACATCTGCAAACTCTTCAACATGGACCCTGAGGCGAACAT-CAAGTTTGTCG 1063
Query 959 AGAACCGCCCATTCAATGACCAGAGGTACTTTCTGGATGACCAGAAGCTGAAGAAA-TTG 1017
| ||| | || || || || ||||||||||| || || || |||||||| || ||| |||
Sbjct 1064 ACAACAGACCTTTTAACGATCAGAGGTACTTCCTTGACGATCAGAAGCTCAA-AAAGTTG 1122
Query 1018 GGATGGTGTGAGCGAACCAATTGGGAAGAAGGACTGAGGAAGACAATGGAATGGTACACT 1077
||||||| ||| |||||| ||||||||||| ||| ||| || ||||| ||||||||
Sbjct 1123 GGATGGTCAGAGAGAACCACGTGGGAAGAAGGGTTGAAGAAAACTATGGATTGGTACACA 1182
Query 1078 GAGAACCCTGAGTGGTGGGGAGATGTTTCTGGAGC-TCTGCTTCCTCATCCACGGATGCT 1136
||||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||||
Sbjct 1183 CAGAACCCGGAGTGGTGGGGTGATGTTTCTGGAGCAT-TGCTTCCTCATCCAAGGATGCT 1241
Query 1137 GATGATGCCCGGTGACCGACACTCTGACGGCTC 1169
||||||||| |||| ||||||| ||| |||||
Sbjct 1242 GATGATGCCTGGTGGGCGACACTTTGATGGCTC 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113403031155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5