BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478894
Length=2764
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14810.1 | Symbols: MSL5 | mechanosensitive channel of small... 4305 0.0
> AT3G14810.1 | Symbols: MSL5 | mechanosensitive channel of small
conductance-like 5 | chr3:4971223-4974354 REVERSE LENGTH=2784
Length=2784
Score = 4305 bits (2331), Expect = 0.0
Identities = 2614/2750 (95%), Gaps = 22/2750 (1%)
Strand=Plus/Plus
Query 25 AAAGAAACCTCTCTCCATTTTTTCCGGAAATAATTGCTCCTTTTAGGTAAGAAAATCTAG 84
||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 47 AAAAAAACCTCTCTCCATTTTTTCCGGAAATAATTACTTCTTTTAGGTAAGAAAATCTAG 106
Query 85 TCTTTTGCCTTTGTGAGATCTCTAAC-GAATCATGGCGGCCGTTGATTCAACTGATCGGC 143
||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 107 TCTCTTGCCTTTGTGAGATCTCTAACGGAATCATGGCGGCTGTCGATTCAACTGATCGGC 166
Query 144 GGGACTTCATAGTGAACATCAACGGCCAAGAGAGTGGAGCCGTCGGTGCTACAGGGTCAA 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GGGACTTCATAGTGAACATCAACGGCCAAGAGAGTGGAGCCGTCGGTGCTACAGGGTCAA 226
Query 204 GCAGCAATGCTGAGGGAGGTAATATTTGGAAAGAATCAAGCTATGATTTTTGGGATGGTG 263
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 227 GCAGCAATGCTGAGGGAGGTAATATTTGGAAAGAGTCAAGCTATGACTTTTGGGATGGTG 286
Query 264 AAAAGGGTAAGAATGATAAGAAAGGAGCCGGCGACGACGATGAAGACGGCGGCAGTTTCC 323
|||||||||||||||||||||||||| | |||||| || |||||||||||||||||||
Sbjct 287 AAAAGGGTAAGAATGATAAGAAAGGA---GACGACGAAGACGAAGACGGCGGCAGTTTCC 343
Query 324 ATTTCACGCAGCCGAGG-GAGCGGAGGCA-TAGTTCAGCTGAGTTAT-TAGATCCGCCGA 380
|||||| |||| || || ||||||||||| | | ||||||||||||| | |||||||||
Sbjct 344 ATTTCAGGCAG-CGGGGAGAGCGGAGGCATTCG-TCAGCTGAGTTATCT-GATCCGCCGT 400
Query 381 CGAAGCTAATTCGTCAGTTTCTTCACAAGCAGAGAGCTTCAGGAGACGAGATCTCTCTAG 440
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 401 CGAAGCTAATTGGTCAGTTTCTTCACAAGCAGAGAGCTTCAGGAGATGAGATCTCTTTAG 460
Query 441 ATGTTGAGCTTAACATGGCAGAGCTACAGAGCAACACGCCGCCACGTGCTACAACTGCAA 500
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 461 ATGTTGAGCTTAACATGGCAGAGCTACAGAGCAACACGCCGCCACGTCCTGCAACTGCTA 520
Query 501 GCAACACGCCGCGACGTGGCTTAACGACGATTTCAGAGTCTTCTTCTCC-GTTCACGACT 559
|||||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||
Sbjct 521 GCAACACGCCGCGACGTGGCTTAACGACGATTTCTGAATCTTCTTCTCCGGTT-AAGACT 579
Query 560 AAAGTTCAAGCTGACGCAGTAAGACGGAGGCAGAGCAGAATATCTCTCGGTGGAAGTAGC 619
|||||| |||| |||||||||||||||||||||| ||||| ||| || ||||||||||||
Sbjct 580 AAAGTTAAAGCAGACGCAGTAAGACGGAGGCAGAACAGAACATCGCTAGGTGGAAGTAGC 639
Query 620 GACGAAGAAGGTCGAAACAGAGACGAAGCAGAGGTTGTGAAGGT-TAGTTCGAATAAACC 678
||||| |||||||||||||||||||||||||||||| |||| || | ||||||| |||||
Sbjct 640 GACGAGGAAGGTCGAAACAGAGACGAAGCAGAGGTTTTGAA-GTGTGGTTCGAAGAAACC 698
Query 679 GATGTTGAGCAGGAACAAGACCAAATCGAGATTGCAGGATCCTCCTACACCGACACATCC 738
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 699 GATGTTGAGTAGGAACAAGACCAAATCAAGATTGCAGGATCCTCCAACACCGACACATCC 758
Query 739 AGCGATTGACAAAACAGAGATGAAGTCTGGTCGGAGATCCGGGATTTTTAAATCTGGGTT 798
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 AGCGATTGACAAGACAGAGATGAAGTCTGGTCGGAGATCCGGGATTTTTAAATCTGGGTT 818
Query 799 TCTTGGGAAAAGCCCTAAAGCGGGTACTCCAGGTCGGAATGGGATTGAGGAAGAAGAAGA 858
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 819 TCTTGGGAAAAGCCCTAAAGCGGGTACTCCGGGTCGGAATGGGTTTGAGGAAGAAGAAGA 878
Query 859 GGAAGATCCGTTTCTAAACGAGGATTTACCGGAGGAATTCAAAAGGGATAAACTTAGCAT 918
||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 879 GGAGGATCCGTTTCTAGACGAGGATTTACCGGAGGAATTCAAAAGGGACAAACTTAGCTT 938
Query 919 CTGGGTTTTTCTTGAATGGATAAGTCTAGTTCTGATAGTCACCAGTTTGGTCTGTAGCTT 978
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 939 CTGGGTTTTCCTTGAATGGATAAGTCTAGTTCTGATAGTCACAAGTTTGGTCTGTAGCTT 998
Query 979 AACCATACATAACTTGCAACGCAAGACATGGTGGAAGCTGGATTTGTGGAAATGGGAAGT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AACCATACATAACTTGCAACGCAAGACATGGTGGAAGCTGGATTTGTGGAAATGGGAAGT 1058
Query 1039 GACGGTTTTGGTGTTGATATGTGGGAGATTAGTCTCGAGTTGGATAGTGAGAATCATTGT 1098
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GACTGTTTTGGTGTTGATATGTGGGAGATTAGTCTCGAGTTGGATAGTGAGAATCATTGT 1118
Query 1099 CTTCTTGGTCGAGAAAAACTTC-CTTTGGAGGAAAAGGGTTTTGTATTTCGTCTACGGAG 1157
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1119 CTTCTTGGTCGAGAAAAACTTCAC-TTGGAGGAAAAGGGTTTTGTATTTCGTCTACGGAG 1177
Query 1158 TTCGAAAATCTGTTCAAAACTGCTTGTGGTTAGGGCTAGTGTTGCTTGCGTGGCATTTCT 1217
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1178 TGAGAAAATCTGTTCAAAACTGCTTGTGGTTAGGGCTAGTGTTGCTCGCGTGGCATTTCT 1237
Query 1218 TGTTCGATAAGAAAGTCAAAAGAGAGACTCGGAGCACTGCGCTTCGGTATGTGACGAGAG 1277
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1238 TGTTCGATAAGAAAGTCGAAAGAGAGACTCGGAGCACTGCTCTTCGGTATGTGACGAGAG 1297
Query 1278 TTTTGGTATGTTTGCTTGTGGCTCTTATCATTTGGCTGGTTAAAACAATTCTGGTTAAAG 1337
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1298 TGTTGGTATGTTTGCTTGTGGCTCTTATCATTTGGTTGGTTAAAACAATTCTGGTTAAAG 1357
Query 1338 TTTTGGCTTCATCGTTCCACATGAGCACTTACTTTGATCGGATTCAGGAGTCGTTGTTCA 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TTTTGGCTTCATCGTTCCACATGAGCACTTACTTTGATCGGATTCAGGAGTCGTTGTTCA 1417
Query 1398 CTCAATATGTGATTGAAGTTCTCTCTGGTCCTCCTTTGATGGAGATTCAGAGAATGGAGG 1457
||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1418 CTCAATACGTGATTGAAACTCTCTCCGGTCCTCCTTTGATGGAGATTCAGAGAATGGAGG 1477
Query 1458 AAGAAGAGCAACAAGTAGCAGAAGATGTTAAGAGCTTAGAGAAATTAGCTGGAGCTAAGC 1517
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1478 AAGAAGAGCAACAAGTAGCAGAAGATGTTAAGAGCTTAGAGAAATTAGCCGGAGCTAAGC 1537
Query 1518 TGCCTCCAGCTCTAAAGGCGACCGTTAAAAGTTTTATGAAAGTCGGGAAACGTCGGGGAA 1577
|||||||||||||||| |||||||| || ||||||||||||||||||||| ||| ||||
Sbjct 1538 TGCCTCCAGCTCTAAAAGCGACCGTCAAGAGTTTTATGAAAGTCGGGAAAAGTCCGGGAC 1597
Query 1578 TGACTCGGATTGGTTCTAAAAAAGGAGAAGATGGCGAAGGGATTAGGATTGATCATTTGC 1637
||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||
Sbjct 1598 TGAATCGGATTGGTTCTAAGAGAGGAGAAGATGGCGAAGGGATTAGGATTGATCAGTTGA 1657
Query 1638 AGAGAATGAACACAGAGAATGTATCTGCTTGGAACATGAAGAGATTGATGAATATAGTAC 1697
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1658 AGAGAATGAACACAAAGAATGTGTCTGCTTGGAACATGAAGAGATTGATGAATATAATAC 1717
Query 1698 TAAAAGGCGCTATTTCTACTTTGGATCAAAATATACAGGACACAT-CTCAGGAGGATGAG 1756
|||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1718 TAAAAGGCGCTATTTCTACTTTGGATCAAAATATGCAGGACAC-TACTCAGGAGGATGAG 1776
Query 1757 AACGCTACGCAGATAAGAAGCGAGTGCGAAGCTAAATGTGCAGCTAGGAAGATTTTCCAC 1816
|||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 1777 GACGCTACGCATATAAGAAGCGAGTACGAAGCTAAATGCGCAGCTAGGAAGATTTTTCAC 1836
Query 1817 AATGTCACCGAGCCAGGTTCCAGGTACATATATTTGGAAGACTTCTTGCGTTTTCTATGT 1876
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1837 AACGTCACCGAGCCAGGTTCTAGGTACATATATTTGGAAGACTTCTTGCGTTTTCTATGT 1896
Query 1877 GAAGAGGAGTCTGAAAGAGCCATGGCTCTCTTTGAAGGAGCTTCAGAGAGCAATAAGATC 1936
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1897 GAAGAGGAGGCTGAAAGAGCCATGGCTCTCTTTGAAGGAGCTTCAGAGAGCGATAAGATC 1956
Query 1937 AGCAAATCTTGCCTCAAGAATTGGGTGGTTAAGGCGTTTAGAGAAAGGAGGGCTCTGGCT 1996
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1957 AGCAAGTCTTGCCTCAAGAATTGGGTGGTTAAGGCGTTTAGAGAAAGGAGAGCTCTGGCT 2016
Query 1997 TTGACCTTAAACGATACAAAAACAGCAGT-GACCAGGCTTCACCGTATAATCAACGTGGT 2055
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 2017 TTGACCTTAAACGATACAAAAACAGCAGTGGA-CAGACTTCACCGTATAATCAACGTGGT 2075
Query 2056 GATTGGCATTATAGTCATAGTCATCTGGCTCCTTATACTGGGAATCGCCACAACCAGATT 2115
|||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 2076 AATTGGCATTATAATCATAATCATCTGGCTTCTTATACTAGGAATCGCCACAACCAGATT 2135
Query 2116 CTTGCTAGTCTTAAGCTCTCAGCTCATTTTAGTAGCCTTTGTATTTGGAAACTCCTGCAA 2175
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2136 CTTGCTAGTCTTAAGCTCTCAGCTCCTTCTAGTAGCCTTTGTATTTGGAAACTCCTGCAA 2195
Query 2176 AACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCG 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2196 AACCATCTTCGAAGCCATCATTTTCCTTTTTGTTATGCACCCATTTGATGTCGGTGACCG 2255
Query 2236 ATGTGAAATCGACGGTGTTCAGTTGGTTGTGGAGGAGATGAACATATTAACGACTGTTTT 2295
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2256 ATGTGAAATCGACGGTGTTCAGTTGGTAGTGGAGGAGATGAACATATTGACGACTGTTTT 2315
Query 2296 CTTGCGAGATGATAATCAAAAGATCACATACCCGAACAGTGTCCTCGGCACAAAACCTAT 2355
||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 2316 CTTGCGATATGATAATCAAAAGATCATATATCCGAATAGTGTCCTCGGCACAAAACCTAT 2375
Query 2356 AGCTAACTATTACCGAAGTCCCGACATGGGAGACGCGGTTGAATTCTGTGTTCATATAGC 2415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2376 AGCTAACTATTACCGAAGTCCCGATATGGGAGACGCGGTTGAATTCTGTGTTCATATAGC 2435
Query 2416 AACTCCTCCTGAAAAGATCACTGCCATTAAACAAAGAATACTAAGTTATGTAGACAACAA 2475
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2436 AACTCCTCCTGAAAAGATCACTGCCATTAAACAGAGAATACTAAGTTACGTAGACAACAA 2495
Query 2476 GAAGGATTACTGGTATCCTGCACCTATGATTGTGTTCCTAAGCATGGATGACTTGAATAG 2535
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 GAAGGATTATTGGTATCCTGCACCTATGATTGTGTTCCTAAGCATGGATGACTTGAATAG 2555
Query 2536 TGTGAAGATAGCCGTGTGGTTGACACATAGAATGAATCATCAAGACATGGGAGAGAGGTA 2595
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2556 TGTGAAGATAGCGGTGTGGTTGACACATAGAATGAATCATCAAGACATGGGAGAGAGGTA 2615
Query 2596 TATAAGAAGAGGTCTATTACTAGAGGAAGTGGCAAAAACTTGTAGAGAGCTCGATATCGA 2655
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2616 TATAAGAAGAGGTCTATTACTAGAGGAAGTGGGAAAAACTTGTAGAGAGCTAGATATCGA 2675
Query 2656 GTATCGCTTATATCCTCTTAGCATTAATGTTCGAAGTCTCCCTCCTACGGCTAATC-AAC 2714
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2676 GTATCGCTTATATCCTCTTAACATTAATGTTCGAAGTCTCCCTCCTACGGCTAATCCAAC 2735
Query 2715 CGTCTCCAGGCCGTGTTCCTCCTTCATGGATGCAACAACACGGTTCTTGA 2764
||| ||| ||| |||||||||||||||||||||||| |||| |||||
Sbjct 2736 T-TCTTCAGACCGCATTCCTCCTTCATGGATGCAACAACGCGGTCCTTGA 2784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137306922991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5