BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478897
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14830.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2460 0.0
AT1G53450.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 837 0.0
> AT3G14830.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53450.2);
Has 73 Blast hits to 73 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4982943-4985857
FORWARD LENGTH=1941
Length=1941
Score = 2460 bits (1332), Expect = 0.0
Identities = 1513/1598 (95%), Gaps = 21/1598 (1%)
Strand=Plus/Plus
Query 59 CGTCAAACCCTAATTTTGACTTCAAGGTGTG-TAATCCCAAATCCGTTTCATAGCTCGAT 117
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 189 CGTCAAACCCTAATTTTGACTTCCGGGTG-GATAATCCCAAATCCGTTTCATAGCTCGAT 247
Query 118 TTCACTCATAAATTTCCGAG----C----TTTTGATTCGCATGAGGATTTGAATAGGCAA 169
|||||| ||||||||||||| | ||||||||||||||||||||||||| | | |
Sbjct 248 TTCACTGATAAATTTCCGAGCTTTCGGTGTTTTGATTCGCATGAGGATTTGAATTGACTA 307
Query 170 GGAAAGATAAAGATGTC-AGTGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 228
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GGAAAGATAAAGATGTCTA-TGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 366
Query 229 TGGGCAAGATTTAGCTGATCGACTTGCTCAGGGATTTACTGGTTTGATTCATATAAACCC 288
||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 367 TGGACAAGACTTAGCTGATCGACTTGCTCAAGGATTTACGGGTTTGATTCATATAAACCC 426
Query 289 ACCTTCGTTTCCATGGCCGCCTAATCATAATCA--TT-ACAAGGCGAAACTATTCGATCT 345
||||||||||||||||||||| ||||| |||| || ||||||||||||| ||||||||
Sbjct 427 ACCTTCGTTTCCATGGCCGCCGAATCACCATCATCTTCACAAGGCGAAACTGTTCGATCT 486
Query 346 CGAGTTCCCTAGTCAACATTTCAGTGTTATTAGGGATTCTAGGTTTAGTATCAACCAACC 405
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 487 CGAGTTCCCAACTCAACATTTCAGTGTTATTAAGGATTCTAGGTTTAGTATCAACCAACC 546
Query 406 CATCAACGGTGTCTCAGCGATTCTTGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 465
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 547 AATCAACGGTGTCACAGCGATTCTCGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 606
Query 466 TTTTGGTGC-GGGTTTGAATGTGATGGTCCAACAATTCTTTAGGAGGTTGCCTATTCCGT 524
|||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 607 CTTTGGTGCTGGG-TTGAATGTGATGGTCCAACAGTTCTTCAGGAGGTTGCCTATACCGT 665
Query 525 TCTTGCACGAGGATAATAACAAGCTTGTTGTCTCTGTTGATGGTGATAAGAGTACAAGGA 584
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 666 TCTTACACGAGGATAATAACAAGCTTGTTGTCTCTGTGGATGGTGATAAGAGTACAAGGA 725
Query 585 GCCATAGGGCTTATGCGATCACAAAAGGTGATTTGGGATTGGCTGCAGAACGGTTGAGGG 644
||||||| ||||||| |||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 726 GCCATAGAGCTTATGTGATCACAAAAGGGGATTTGGGAATGGCTACAGAACGGTTGAGGG 785
Query 645 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 845
Query 705 CAGATTCCTATCTAAGAACTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATATGT 764
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 846 CAGATTCCTATCTTAGAGCTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATACGT 905
Query 765 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGACC 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 906 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGATC 965
Query 825 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 1025
Query 885 TTCTTCTCCAGCTTGGACCACTTCTCTTTCTACGCGATTCAACGCTTCTTTTACCGTTAC 944
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1026 TTCTTCTCCAACTTGGACCACTTCTCTTTCTACGCGATTCAACTCTTCTTTTACCGTTAC 1085
Query 945 ACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1004
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 ACTTATCAAAACAGCACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1145
Query 1005 TCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1064
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1146 TCTGTCCAGCTATATGGTCAAAGCATCGGAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1205
Query 1065 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1265
Query 1125 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGCGGTCTTCTTCAAGCAC 1184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1266 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGTGGTCTTCTTCAAGCAC 1325
Query 1185 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1385
Query 1245 TAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTTTCTCAACCCT 1304
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1386 GAATCACACCAATGGTACATTGGCCTGATAAATCATTTGGGTTGGATCTTTCTCAACCCT 1445
Query 1305 TGGCTTGGCGTAGAGTC-GGACTACTGATGAAACCAACAATTCAAGTCAGTGTATGTCCC 1363
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1446 TGGCTTGGCGTAGA-TCCGGACTACTGATGAAACCGACAATTCAAGTCAGTGTATGTCCC 1504
Query 1364 ACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTCGTTGAGCGATGA 1422
||||| |||||||||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct 1505 ACATTCGGTGGAAGCAATCCCGGGATT-AAGGCAGAAGTTATTCACTCGTTGAGCGATGA 1563
Query 1423 CTTGAATCTCATATGTGGCTATGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTATC 1482
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1564 CTTGAATCTGATATGTGGCTACGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTAGC 1623
Query 1483 TTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1542
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1624 TTTTGGTCGGTCGAAATGGAATGGAAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1683
Query 1543 TACTCCTCTTGCAAGTATCGGCCAGCCTTCCTTCTCTGTCCAGTTTAATAACGCTATCGA 1602
|||||| ||||||||||| ||||||||||| |||||| ||||| ||||||||||| ||||
Sbjct 1684 TACTCCACTTGCAAGTATTGGCCAGCCTTCTTTCTCTATCCAGCTTAATAACGCTTTCGA 1743
Query 1603 GTTCTGAACCTTTCCAATATAAGATAGaaaaaaaaaaa 1640
|||||||| ||||||||||||| |||| | ||||||||
Sbjct 1744 GTTCTGAATCTTTCCAATATAACATAGGAGAAAAAAAA 1781
Score = 60.2 bits (32), Expect = 6e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 CAAAGTGGCGGTAACTGGTAAGGTTAATCTGTGTG 35
|||||||||||||||||||||||||||||| ||||
Sbjct 25 CAAAGTGGCGGTAACTGGTAAGGTTAATCTCTGTG 59
> AT1G53450.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G14830.2);
Has 71 Blast hits to 71 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19951235-19954115
REVERSE LENGTH=2150
Length=2150
Score = 837 bits (453), Expect = 0.0
Identities = 815/986 (83%), Gaps = 40/986 (4%)
Strand=Plus/Plus
Query 645 ACTCAGGGTTTTCTAAGACAGATGA-TACTGCTTCTGTTACTATGTCTGAGGAGGAAGTT 703
|||||| |||||||||||||||| | | || | |||| |||| ||| ||||||| |||||
Sbjct 674 ACTCAGCGTTTTCTAAGACAGAT-ACTGCTTCCTCTGGTACTGTGTATGAGGAGAAAGTT 732
Query 704 GCAG-ATTCCTATCTAAGAACTGCTGGATTGC-TTGGAAGATCAAAGGGAACAATTGATA 761
||| ||| | || |||| ||| |||||| | | || ||| |||||||||| ||||
Sbjct 733 ACAGAATT-CGATTTAAGGACTATTGGATTACATAGG-AGAGCAAAGGGAACGGTTGAGC 790
Query 762 TGTCATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAG 821
| |||||||||||||| | |||||||| | ||||||||||||| || |||||||| ||||
Sbjct 791 TATCATCAAGTTATGAAACTAGGACAAGTAGTATGGAACATTCGTTAGCAGCCAGGGGAG 850
Query 822 ACCTCTGGAGGGTAGAAGCTTC-ACATTCGAGTTCTACTGCAAGCGATGGA-AATTCGTC 879
| || ||||| ||||||||||| || ||| | ||| ||| || ||| || | |||||
Sbjct 851 ATCTTTGGAGAGTAGAAGCTTCTAC-TTCAAATTCCCCTGTGAGAGAT-GATAGCTCGTC 908
Query 880 TCTCTTTCTTCTCCAGCTTGGACCACT-TCTCTTTCTACGCGATTCAACGCTTCTTTTAC 938
||||||||| |||||||||||||| || | | ||||| ||||||||||| |||||||| |
Sbjct 909 TCTCTTTCTACTCCAGCTTGGACCTCTGT-TATTTCTGCGCGATTCAACTCTTCTTTTGC 967
Query 939 C-GTTACACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATG 997
| ||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 968 CTGTT-CATTTATCAAAGCAACACTTGCTCTGGTACGGATATGATAGAAAGAAAGGTATG 1026
Query 998 CATTCACTCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTC 1057
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTC 1086
Query 1058 T-CTCTCAATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGAC 1116
| | ||||||||||||| |||||||||| | || |||||||| ||||| || ||||| ||
Sbjct 1087 TGC-CTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTCCCAAATGGACAATTAAC 1145
Query 1117 ATATGTATCTGGCGAAGGACTGACGACAAGTG-CTTTTGTGCCTTTTTGTGGCGGTCTTC 1175
|||||| ||||| || ||| |||||||||||| |||| || ||||| || |||||||| |
Sbjct 1146 ATATGTTTCTGGTGAGGGATTGACGACAAGTGTCTTT-GTTCCTTTATGCGGCGGTCTCC 1204
Query 1176 TTCAAGCACAGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAAT 1235
||||||| || |||||||||||||| || |||||||| |||| |||||| |||| ||||
Sbjct 1205 TTCAAGCGCAAGGTCAATATCCAGGAGATATGAGATTCAGTTTCTCTTGCAAGAGTAAAC 1264
Query 1236 -GTGGAACCCTAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTT 1294
| ||||| | ||||||||| ||| || | ||||||||||||||||| || |||| | ||
Sbjct 1265 AG-GGAACACGAATCACACCGATGATAAACTGGCCTGACAAATCATTGGCATTGGGTGTT 1323
Query 1295 TCTCAACCCTTGGCTTGGCGTAGAGTC-GGACT-ACTGATGAAACCAACAATTCAAGTCA 1352
|||||| |||||||||||||||| ||| || | | || ||||||| |||||||| | |
Sbjct 1324 TCTCAAGCCTTGGCTTGGCGTAG-GTCCGGTGTCA-TGTTGAAACCTGCAATTCAACTTA 1381
Query 1353 GTGTATG-TCCCACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTC 1410
|||| || || |||||||||||||||||||| ||| || ||| | ||||||||||| ||
Sbjct 1382 GTGTGTGCTCT-ACATTTGGTGGAAGCAATCCCGGGATTAAAACC-GAAGTTATTCAGTC 1439
Query 1411 GTTGAGCGATGACT-TGAATCTCATATGTGGCTATGCACTCA-ATGCACATCCTTCAGCA 1468
||||| ||| | | | ||| | |||||||||| |||| ||| | || ||||||||| ||
Sbjct 1440 GTTGAATGATAA-TATCAATATGATATGTGGCTGTGCATTCACA-GCTCATCCTTCAACA 1497
Query 1469 TTTGCCTCTGTATCTTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATA 1528
||||| ||||| || ||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct 1498 TTTGCATCTGTTTCCTTTGGTCGGTCTAAGTGGAATGGGAACATTGGACGAACAGGAATA 1557
Query 1529 GTTGTTAGAGCTGATACTCCTCTTGCAA--GTATCGGC-C-AGCCTTCCTTCTCTGTCCA 1584
|||||||||||||||||||||||| ||| || | | | | | ||||| ||||| | ||
Sbjct 1558 GTTGTTAGAGCTGATACTCCTCTTCCAAACGT-T-G-CTCGA-CCTTCTTTCTCCATTCA 1613
Query 1585 GTTTAATAACGCTATCGAGTTCTGAA 1610
| | || || ||| ||||||||||||
Sbjct 1614 GATCAACAATGCTTTCGAGTTCTGAA 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5