BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478899
Length=3065
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14840.2 | Symbols: | Leucine-rich repeat transmembrane pro... 2632 0.0
AT1G53420.1 | Symbols: | Leucine-rich repeat transmembrane pro... 638 0.0
> AT3G14840.2 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr3:4988107-4994058 FORWARD LENGTH=3394
Length=3394
Score = 2632 bits (1425), Expect = 0.0
Identities = 1704/1838 (93%), Gaps = 22/1838 (1%)
Strand=Plus/Plus
Query 1140 AAATAAC-TCCAATGAGACTAAGTATGACGCTGACACATGGGATACACCGGGTTATTATA 1198
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1402 AAATAACAAGCAATGAGACTAAGTATGATGCTGACACATGGGATACACCGGGTTACTATG 1461
Query 1199 ATATTAGAAACGGGTGGGTTTCTAGCAACACGGGAAACTTCTTGGATGATGATCGGACTA 1258
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 ATAGTAAAAACGGGTGGGTTTCTAGCAACACGGGAAACTTCTTGGATGATGATCGGACTA 1521
Query 1259 ACAATGGAGAAAAC-GTATGGGAGAATTCATCTGCGCTTAACATAACAAATTCTAGCCTA 1317
|||||||| ||| | |||| ||||||||| | |||||| ||||||||||||||| ||
Sbjct 1522 ACAATGGA-AAATCAAAATGGTCGAATTCATCAGAGCTTAAGATAACAAATTCTAGCATA 1580
Query 1318 GATTCTAGG-TTCTATACACACGCGCGTCTGTCGGCCATTTCCCTCACTTACTACGCATT 1376
|||| |||| || || ||||| |||||||| ||||| || |||||||||||| | |||||
Sbjct 1581 GATTTTAGGCTT-TACACACAAGCGCGTCTCTCGGCTATCTCCCTCACTTACCAGGCATT 1639
Query 1377 GTGTCTTGGAGAAGGAAACTATACGGTTAATCTTCATTTCGCTGAAATTATGTTCAGTGA 1436
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1640 GTGTCTTGGAAAAGGAAACTATACGGTTAATCTTCATTTCGCTGAAATTATGTTCAATGA 1699
Query 1437 CAACAAC-TCGTATACCAGTTTGGGAAGACGATTCTTTGACATATACGTTCAGGGTAAAC 1495
|| ||| | ||||| || |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1700 AAAGAACAT-GTATAGCAATTTGGGAAGACGATACTTCGACATATACGTTCAGGGTAAAC 1758
Query 1496 TTGAGGTGAAGGATTTCAATATTGTTGATGAGGCAAAAGGTGCAGGAAGAGCTGTGGTTA 1555
||| ||||| ||||||||||| |||||||| |||||||||| |||| |||||| ||||
Sbjct 1759 GTGAAGTGAAAGATTTCAATATCGTTGATGAAGCAAAAGGTGTGGGAAAAGCTGTTGTTA 1818
Query 1556 AGAAATTTCCGGTCACAATTACGAATGGGAAACTGGATATTAGATTACAGTGGGCTGGGA 1615
|||||||||| |||| |||| |||||||||||||| || ||||| |||||||||||||
Sbjct 1819 AGAAATTTCCTGTCATGGTTACAAATGGGAAACTGGAAATAAGATTGCAGTGGGCTGGGA 1878
Query 1616 AAGGAACTCAAGCTATTCCTGTGAGAGGTGTATATGGTCCTCTCATATCTGCTGTATCAG 1675
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1879 AAGGAACTCAAGCTATTCCTGTGAGAGGTGTCTATGGTCCTCTCATATCTGCTGTATCGG 1938
Query 1676 TAGATCCAAATTTTATTCCACCAAAGGAA-----C-CTGGAACTGGTGGTGGAAGCTCTG 1729
|||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1939 TAGATCCAGATTTTATTCCACCAAAGGAACCGGGCACTGGAACTGGTGGTGGAAGTTCTG 1998
Query 1730 TTGGTGCAGTGGTTGGTAGTGTAATTGCTTCAACTTTGTTTCTTGTGCTTTTAATCGGCG 1789
||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1999 TTGGTACAGTGGTTGGTAGTGTAATCGCTTCTACGGTGTTTCTTGTGCTTTTAATCGGCG 2058
Query 1790 GTATATTATGGTGGAGAGGCTGCTTAAGACCCAAGAGTCAGATGGAAAAAGATTTCAAGA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 GTATATTATGGTGGAGAGGCTGCTTAAGACCCAAGAGTCAGATGGAAAAAGATTTCAAGA 2118
Query 1850 ACTTAGATTTCCAGATCAGTTCATTCTCGTTGAGGCAAATCAAAGTAGCCACAGATAACT 1909
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 2119 ACTTAGATTTCCAGATCAGTTCGTTCTCCTTGAGGCAAATCAAAGTTGCCACGGATAACT 2178
Query 1910 TTGATCCTGCAAACAAGATCGGAGAAGGTGGTTTCGGTCCTGTACACAAGGGAATACAGG 1969
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2179 TTGATCCTGCAAACAAGATCGGAGAAGGTGGTTTTGGTCCTGTACACAAGGGAAT--A-- 2234
Query 1970 GAGTGTTGACTGATGGAACCGTAATCGCGGTGAAGCAGCTATCGGCGAAATCAAAACAAG 2029
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2235 -A----TGACTGATGGAACTGTAATCGCGGTGAAGCAGCTATCGGCAAAATCAAAACAAG 2289
Query 2030 GGAATAGGGAGTTCTTGAACGAGATTGCTATGATTTCGGCTCTGCAGCATCCACATTTGG 2089
||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2290 GGAATCGAGAATTCTTAAACGAGATTGCTATGATTTCGGCTCTGCAGCATCCACATTTGG 2349
Query 2090 TTAAACTATATGGATGTTGTGTCGAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTGG 2149
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2350 TTAAACTATATGGATGTTGCGTTGAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTGG 2409
Query 2150 AAAACAACAGTCTCGCACGAGCTCTTTTCGGTCCTCAAGAGACTCAGATACCACTAAATT 2209
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2410 AGAACAACAGTCTCGCGCGAGCTCTTTTCGGACCTCAAGAGACTCAGATACCACTAAATT 2469
Query 2210 GGCCAATGAGGCAGAAGATTTGTGTCGGAATAGCGAGAGGATTAGCTTATCTTCACGAGG 2269
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2470 GGCCAATGAGGCAGAAGATTTGTGTTGGAATAGCGAGAGGATTAGCTTATCTCCACGAGG 2529
Query 2270 AATCAAGACTCAAGATCGTACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGG 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2530 AATCAAGACTCAAGATCGTACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGG 2589
Query 2330 AACTAAACCCAAAGATTTCTGATTTTGGTCTTGCTAAGCTTGATGAAGAAGAAAACACAC 2389
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2590 AACTAAACCCAAAGATTTCAGATTTTGGGCTTGCTAAGCTTGATGAAGAAGAAAACACAC 2649
Query 2390 ACATCAGCACACGAGTTGCCGGAACATATGGATACATGGCTCCAGAGTACGCCATGAGAG 2449
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 2650 ACATCAGCACACGAGTCGCTGGAACATATGGATACATGGCTCCAGAATACGCCATGAGAG 2709
Query 2450 GCCATTTGACAGATAAAGCCGACGTCTACAGTTTCGGTGTTGTGGCTTTAGAAATCGTTC 2509
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 2710 GCCATTTGACAGATAAAGCCGACGTCTACAGTTTTGGCGTTGTGGCCCTAGAAATCGTTC 2769
Query 2510 ACGGGAAGAGCAACACGAGCTCACGATCCAAAGCAGATACCTTCTACCTTCTTGACTGGG 2569
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2770 ACGGAAAGAGCAACACGAGCTCACGATCTAAAGCTGATACCTTCTACCTTCTTGACTGGG 2829
Query 2570 TGCACGTTCTAAGGGAGCAAAACAATCTGTTTGAAGTAGTAGATCCAAGGCTAGGAACAG 2629
|||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2830 TGCACGTTTTAAGGGAACAAAACACTCTACTTGAAGTAGTAGATCCAAGGCTAGGAACAG 2889
Query 2630 ATTACAACAAACAAGAAGCAATGACGATGATTAAGATAGGGATGCTCTGCACTAGTCCAG 2689
|||||||||||||||||||| ||| ||||||| |||||||||||||||| || |||||||
Sbjct 2890 ATTACAACAAACAAGAAGCATTGATGATGATTCAGATAGGGATGCTCTGTACCAGTCCAG 2949
Query 2690 CTCCAGGGGATAGACCTTCGATGTCGACGGTGGTGAGTATGCTCGAAGGCCATTCAACGG 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2950 CTCCAGGGGATAGACCTTCGATGTCGACGGTGGTGAGTATGCTCGAAGGCCATTCAACGG 3009
Query 2750 TGAATGTTGAGAAGCTTCTTGAAGCTTCTTTAAACAATGAAAAGGACGAAGAGAGCGTGA 2809
||||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 3010 TGAATGTTGAGAAACTTCTTGAAGCTTCGGTCAACAATGAAAAGGACGAAGAGAGTGTGA 3069
Query 2810 GAGCTATGAAAAGACATTACGCCACGATAGGTGAGGAGGAGATAACGAACACGACGACCA 2869
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 3070 GAGCGATGAAAAGGCATTACGCCACGATAGGTGAGGAGGAGATAACGAACACGACAACTA 3129
Query 2870 CCGATGGACCTCTCACGTCGTCTTCTACGTCAACCGCCAACGCCGGCGATCTTTACCCTG 2929
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3130 CCGATGGACCTTTCACGTCGTCTTCTACGTCAACCGCCAACGCCAACGATCTTTACCCTG 3189
Query 2930 TTAAGCTCGACTCTGCTTATTGGAACACCAGAACTTAA 2967
|||||||||||||||| ||||||||||| |||||||||
Sbjct 3190 TTAAGCTCGACTCTGCCTATTGGAACACTAGAACTTAA 3227
Score = 1391 bits (753), Expect = 0.0
Identities = 1039/1173 (89%), Gaps = 36/1173 (3%)
Strand=Plus/Plus
Query 1 ATGTCGTTAAATCGACAACTCCTCTTCACTTACTTCTTCATCGTCTCTCTTATCCTCTTC 60
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 165 ATGTCGTTAAATCGACAACTTCTATTCACTTACTACTTCATCGTCTCTCTTATCCTCTTC 224
Query 61 TCCGGTTTCGTATCCTCT-CAAACATTACCAAAAGAAGAAGTGGATGCTTTACAAAGCGT 119
|||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 225 TCCGATTTCGTATCCTCTGC-AACATTACCAAAAGAAGAAGTGGATGCTTTACAAAGCGT 283
Query 120 AGCGACGGCGTTGAAGAAGAGTGGTTGGAATTTTAGTGTGGATCCATGCGACCTCAC-TT 178
||||||||||||||||||||| ||||||||| |||||||||||||| ||| || ||
Sbjct 284 CGCGACGGCGTTGAAGAAGAGTAATTGGAATTTCAGTGTGGATCCATGTGACGAAACCTT 343
Query 179 --CTGACGGCGGATGGAGGAATCTTAACGCCGCTAAGGGATTTGAAGACGCCGTTTCTTG 236
|||| |||||||||||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 344 GTCTGAAGGCGGATGGAGGAATCCTAACGCCGCTAAGGGATTCGAAGACGCCGTTACTTG 403
Query 237 TACCTGCTCCTCCGTCATTTGCCACGTCAACAACAGAGTTCTCAAGGCACAAGACCTTCA 296
|| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 404 TAACTGCTCCTCCGTCATCTGCCACGTCACCAACATAGTTCTCAAGGCACAAGACCTTCA 463
Query 297 AGGAACTCTTCCTAAAGATCTTTCAGGCCTTCCTTTCTTGCAAGAGATTGATCTGTCTAG 356
|||| ||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 464 AGGATCTCTTCCTACAGATCTTTCAGGACTTCCTTTCTTGCAAGAGCTTGATCTGACTAG 523
Query 357 AAACTTTCTCAACGGTTCCATTCCTCCCGAATGGGCATCCTTGCCACTTGTCAACATCTC 416
||||| ||||||||||||||||||||||||||||| | ||| ||||| | ||||||||
Sbjct 524 AAACTATCTCAACGGTTCCATTCCTCCCGAATGGGGAGCCTCATCACTTCTAAACATCTC 583
Query 417 ACTTCTTGGAAATCGGATAACTGGTCCAATCCCAAAAGAATTTGGAAACCTTACTAACC- 475
||| |||||||| ||||||| |||| |||||||||||||| ||||||||||||| ||||
Sbjct 584 ACTACTTGGAAACCGGATAAGTGGTTCAATCCCAAAAGAACTTGGAAACCTTAC-AACCC 642
Query 476 TT-C-GAAGTTTTGTCTTGGAATACAACCAAATCTCAGGGAAGTTACCTCCAGAGCTCGG 533
|| | | || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 643 TTTCTG--GTCTTGTCTTGGAATACAACCAACTCTCAGGGAAGATACCTCCAGAGCTCGG 700
Query 534 GAATTTACCCAACATTCAAAGACT----CT---C--GAACAATTTGAGTGGGGAAATACC 584
|||| |||| ||| || ||||||| || | ||| || ||||| |||||||| ||
Sbjct 701 GAATCTACCAAACCTTAAAAGACTGTTACTTAGCTCGAATAACTTGAGCGGGGAAATCCC 760
Query 585 AAGTACATTTTCCAAACTTGTTACACTGACTGATTTCCGTATCAGTGACAATCAGTTCAC 644
||||||||| |||||||| ||| |||||||||| ||||| |||||||| ||||||||
Sbjct 761 AAGTACATTCGCCAAACTTACTACGTTGACTGATTTACGTATTAGTGACAACCAGTTCAC 820
Query 645 TGGTACTATACCAGATTTCATCCAGAACTGGACAGGACTTGAGAAACTGGTTATTCAAGC 704
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 821 TGGTGCTATACCAGATTTCATCCAGAACTGGAAAGGACTAGAGAAACTGGTTATTCAAGC 880
Query 705 AAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGTCTTCTGGGAAACTTAACAGACTT 764
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 881 AAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGTCTTCTGGGAACCTTGACAGACTT 940
Query 765 GAGAATCACTGACTTTAGTGGACCTGAATCTCCATTTCCGCCACTAATAAACATGACATC 824
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 941 GAGAATCACTGACTTGAGTGGACCTGAATCTCCATTTCCGCCACTAAGAAACATGACATC 1000
Query 825 GTTGAAGAATTTGATTCTTAGGAACTGCAACCTTACAGGCA-ATTTACCTTCGTATCTTG 883
| ||||| ||||||||||||||||||| ||||||||||| | | |||||| |||||||||
Sbjct 1001 GATGAAGTATTTGATTCTTAGGAACTGTAACCTTACAGG-AGACTTACCTGCGTATCTTG 1059
Query 884 GAC-GCA--GAACCTTAAAGAATTTGTTAGATCTTAGCTTTAACAAACTGAGTGGACCAA 940
||| | | ||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1060 GACAGAATAGAAAATTAAAGAATCT---AGATCTTAGCTTTAACAAACTGAGTGGACCAA 1116
Query 941 TCCCCGAGAGTTATACAGCTCTTTCAGATGTAGATTACATATATTTTACAAGTAACATGT 1000
|||| | | ||| | | ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1117 TCCCAGCCACATATTCCGGTCTTTCAGATGTAGATTTCATATACTTTACAAGTAACATGT 1176
Query 1001 TAAACGGGGAAGTACCACACT-GGATGGCAGACAAAGGAGACACGATTGATCTTGCTTAC 1059
|||| || |||||||| | | |||||| |||| ||||||||||||||||| || |||||
Sbjct 1177 TAAATGGACAAGTACCA-AGTTGGATGGTAGACCAAGGAGACACGATTGATATTACTTAC 1235
Query 1060 AATAACTTCTCCAAAGATGTTAAAATCGATGAATGCCAACGAAA--CAG-GAATACGTTT 1116
|||||||||||||||||| |||| ||| ||||| |||| ||| | | ||| ||||||
Sbjct 1236 AATAACTTCTCCAAAGAT---AAAACCGAAGAATGTCAACAAAAATCCGTGAACACGTTT 1292
Query 1117 TCAAGCACAAGCCCTTTAGTGGCAAATAACTCC 1149
|||||||||||||||||||||||||||||||||
Sbjct 1293 TCAAGCACAAGCCCTTTAGTGGCAAATAACTCC 1325
Score = 73.1 bits (39), Expect = 1e-11
Identities = 68/80 (85%), Gaps = 9/80 (11%)
Strand=Plus/Plus
Query 2995 TTTTGTA-TTATGATTATTTTATTTAAGAC-------A-ATTACGTTACCTGAAACAGAA 3045
|||| || ||||||||||| |||||||||| | |||||||||| ||||||||||
Sbjct 3311 TTTTTTATTTATGATTATTCTATTTAAGACAATTGGAAGATTACGTTACATGAAACAGAA 3370
Query 3046 AATGAGAATATTTATCTTAA 3065
||||||||||||||||||||
Sbjct 3371 AATGAGAATATTTATCTTAA 3390
> AT1G53420.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:19926626-19931494 REVERSE LENGTH=2862
Length=2862
Score = 638 bits (345), Expect = 0.0
Identities = 1022/1337 (76%), Gaps = 93/1337 (7%)
Strand=Plus/Plus
Query 1360 CTCACTTACTACGCATTGTGTCTTGGAGAA-GGAAACTA-TACGGTTAATCTTCATTTCG 1417
||||||||||| ||||||||| || || || ||||| || || |||||||| |||||||
Sbjct 1333 CTCACTTACTATGCATTGTGT-TTAGAAAATGGAAATTACAAC-GTTAATCTCCATTTCG 1390
Query 1418 CTGAAATTATGTTCAGTGACAACAACTCGTATAC-CAGTTTGGGAAGACGATTCTTT-GA 1475
| || |||||||||| || |||||| ||| | || ||||| ||||| || ||| ||
Sbjct 1391 CCGAGATTATGTTCAATGGTAACAACAATTAT-CAAAGCTTGGGTAGACGGTT-TTTCGA 1448
Query 1476 CATATACGTTCAG-GGTAAACTTGAGGTGAAGGATTTCAATATTGTTGATGAGGCAAAAG 1534
||||||| ||||| || || || ||||| || ||||||||||| | | ||||||||||
Sbjct 1449 CATATACATTCAGAGG-AAGCTCGAGGTTAAAGATTTCAATATCGCCAAGGAGGCAAAAG 1507
Query 1535 GTGCAGGAAGA-GCTGTGGTTAAGAAATTTCCGGTCACA-ATTACGA-ATGGGAAA-CTG 1590
|| |||| | | ||| |||||| |||||||||| | | || | || ||||| ||
Sbjct 1508 ATGTTGGAA-ACGTTGTTATTAAGACATTTCCGGTC-GAGA-TAAAAGAT-GGAAAGTTG 1563
Query 1591 GATATTA-GATTACAGTGGGCTGGGAAAGGAACTCA-AGCT-ATT-CCTGTGAGAGGTGT 1646
|| | || |||| | ||||| |||| ||||||| | || | ||| || || | ||||
Sbjct 1564 GAGA-TACGATTGTATTGGGCCGGGAGAGGAACT-ACAG-TCATTCCCAAAGA-ACGTGT 1619
Query 1647 ATATGGTCCTCTCATATCTGCTGTATCAGTAGATCCAAATTTTATTCCA-C-CAAAGGAA 1704
||||||||||||||||| ||| ||||||| ||| ||| | ||| |||| | | | |||
Sbjct 1620 TTATGGTCCTCTCATATCAGCTATATCAGTGGATTCAAGTGTTAATCCATCTCCTA-GAA 1678
Query 1705 CCTGGAACTG-GTGGTGGAAGCTCTGTTGGTGCAGTGGTTGGTAGTGTAATTGCTTCAAC 1763
||| | || || ||| | ||| | | || ||||||||| | | ||| | |
Sbjct 1679 -ATGGTA-TGAGTACTGGTA-CTC--TCCATACA----TTGGTAGTG--A-T-CTT-ATC 1724
Query 1764 TTTGTTTC-TTGTGCTTT-TAATCGGCGGTATA-T-TATGGTGGAGAGGCTGCTTAAGAC 1819
| |||| ||||| ||| | | || | | | ||||| | ||| | ||| |||
Sbjct 1725 CAT-TTTCATTGTG-TTTCTCGTATTTGG-A-ACTCTATGGAAAAAAGGTTACTTGAGAT 1780
Query 1820 CCAAGAGTCAGATGGAAAAAGATTTCAAGAA-CTTAGATTTCCA-GATCAG-TTCATTCT 1876
| || || || ||||||||||||||||| || || || | || ||| | ||| ||||
Sbjct 1781 CGAAAAGCCAAATGGAAAAAGATTTCAA-AAGTTTGGAACT-CATGAT-TGCTTCTTTCT 1837
Query 1877 CGTTGAGGCAAATCAAAGTAGCCACAGATAACTTTGATCCTGCAAACAAGATCGGAGAAG 1936
||||||||||||||||| | || ||| | ||||||||| ||||||| | ||| |||||||
Sbjct 1838 CGTTGAGGCAAATCAAAATCGCTACAAACAACTTTGATTCTGCAAATAGGATTGGAGAAG 1897
Query 1937 GTGG-TTTCGGTCCTGTACACAAGGGAATACAGGGAGTGTTGACTGATGGAACCGTAATC 1995
| || ||| ||||||||| ||||||| | | | | | || ||||||||| |||||
Sbjct 1898 GCGGCTTT-GGTCCTGTATACAAGGG-A-A-A--G-TTATT---TGATGGAACAATAATC 1947
Query 1996 GCGGTGAAGCAGCTATCGGCGA-AATCAAAACAAGGGAATAGGGAGTTCTTGAACGAGAT 2054
|| ||||| || || ||| | | ||||||||||||||| | |||||||||||||||||
Sbjct 1948 GCAGTGAAACAACTTTCGAC-AGGATCAAAACAAGGGAACCGCGAGTTCTTGAACGAGAT 2006
Query 2055 T-GCTATGATTTCGGCTCTGCAGCATCC-ACATTTGGTTAAACTATATGGATGTTGTGTC 2112
| || |||||||| |||||||| || || | || |||||||||||||||||||||| ||
Sbjct 2007 TGGC-ATGATTTCAGCTCTGCACCACCCTA-ATCTGGTTAAACTATATGGATGTTGCGTT 2064
Query 2113 GAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTG--GAAAACAACAGTCTCGCACGAG 2170
||||| | || || | |||| || |||| ||| ||||||||||||||||| ||||
Sbjct 2065 GAAGGAGGCCAACTTTTATTAGTCTATGAGT--TTGTAGAAAACAACAGTCTCGCTCGAG 2122
Query 2171 CTCTT-TTCGGTCCTCAAGAGACTCAGAT-ACCACTAAATTGGCCAATGAGGCAGAAGAT 2228
| || || ||||||||||| |||||| | | | | | ||||| | || | ||||||
Sbjct 2123 C-ATTGTTTGGTCCTCAAGAAACTCAGTTGA-GATTGGACTGGCCTACAAGACGGAAGAT 2180
Query 2229 TTGTGTCGGAATAGCGAGAGGATTAGCTTATCTTCACGAGGAATCAAGACTCAAGATCGT 2288
||| ||||| | |||||||| |||| ||||| ||||| ||||| || || ||||| ||
Sbjct 2181 CTGTATCGGAGTGGCGAGAGGGCTAGCATATCTACACGAAGAATCGAGGCTAAAGATTGT 2240
Query 2289 ACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGGAACT-AAACCCAAAGATTT 2347
||||||||||||||||||||||||||| ||||| || || |||| || || ||| || |
Sbjct 2241 ACACAGAGACATCAAAGCCACTAATGTGTTGCTAGACAAACAACTGAATCCGAAA-ATAT 2299
Query 2348 CTGATTTTGGTCTTGCTAAGCTTGATGAAGAAGAAAACACACACATCAGCACACGAGTTG 2407
| || ||||||||||| |||||||||||||| || | ||| ||||| ||||| ||| | |
Sbjct 2300 CAGACTTTGGTCTTGCCAAGCTTGATGAAGAGGACAGCACTCACATTAGCACTCGAATCG 2359
Query 2408 CCGGAACATATGGATACATGGCTCCAGAGTACGCCATGAGAGGCCATTTGACAGATAAAG 2467
| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2360 CTGGAACATTTGGTTACATGGCTCCGGAGTACGCCATGAGAGGCCATTTGACAGATAAAG 2419
Query 2468 CCGACGTCTACAG-TTTCGGTGTTGTGGCTTTAGAAATCGTTCACGGGAAGA-GCAACAC 2525
| ||||| ||||| ||| ||| | || ||| |||| || ||||| || |||| |||| |
Sbjct 2420 CTGACGTTTACAGCTTT-GGTATAGTAGCTCTAGAGATTGTTCATGG-AAGAAGCAATAA 2477
Query 2526 GAGCTCACGATCCAAAG-CAGATACCTTCTACCTTCTTGACTGGGTGCACGTTCTAAGGG 2584
| |||||||||| || |||||||||| ||| ||||||||||| | ||| | || |
Sbjct 2478 AATAGAACGATCCAAAAACA-ATACCTTCTATCTTATTGACTGGGTGGAGGTTTTGAGAG 2536
Query 2585 AGCAA-AACAATCTGTTTGAAGTAGTAGATCCAAGGCTAGGAACAGATTACAACAAACAA 2643
|| || || |||||||| ||| | || |||||||| |||||| |||| || |||| | ||
Sbjct 2537 AG-AAGAATAATCTGTTGGAACTGGTGGATCCAAGACTAGGATCAGAATATAACAGAGAA 2595
Query 2644 GAAGCAATGACGATGAT 2660
||||||||||| |||||
Sbjct 2596 GAAGCAATGACCATGAT 2612
Score = 411 bits (222), Expect = 3e-113
Identities = 625/812 (77%), Gaps = 57/812 (7%)
Strand=Plus/Plus
Query 292 CTTCAAGGAACTCTTCCTAAAGATCTT--TCAGGCCTTCCTTT-CTTGCAAGAGATTGAT 348
|||||||| ||||||| ||||| || | || |||||||| | ||||||||||||||
Sbjct 223 CTTCAAGGGTCTCTTCCAAAAGA-GTTAGT-GGGACTTCCTTTAC-TGCAAGAGATTGAT 279
Query 349 CTGTCTAGAAACTTTCTCAACGGTTCCATTCCTCCCGAATGGGCA-TCCTTGCCACTTGT 407
|| || ||||||| |||||| |||||||| ||||| ||||||| | | ||||||||||||
Sbjct 280 CTCTCAAGAAACTATCTCAATGGTTCCATCCCTCCTGAATGGGGAGT-CTTGCCACTTGT 338
Query 408 CAACATCTCACTTCTTGGAAATCGGA-TAACTGGTCCAATCCCAAAAGAATTTGGAAACC 466
|||||| | ||||| ||||| | || |||| ||||||||||| || || |||||||||
Sbjct 339 CAACATTTGGCTTCTCGGAAA-CCGATTAACAGGTCCAATCCCTAAGGAGTTTGGAAACA 397
Query 467 TTACTAAC-CTT-CGAAGTTTTGTCTTGGAATACAACCAAATCTCAGG-GAAGTTACCTC 523
|||| ||| ||| | || ||||||||||| ||| ||| | ||||| ||| |||||||
Sbjct 398 TTAC-AACTCTTAC-TAGCCTTGTCTTGGAAGCCAATCAACTTTCAGGAGAA-TTACCTC 454
Query 524 CAGAGCTCGGGAATTTACCCAACATT---CAAA-GA--C-T--CTCGAACAA-TTTGAGT 573
||||| |||||| |||| |||||| |||| || | | |||||| || ||| | |
Sbjct 455 TTGAGCTAGGGAATCTACCAAACATTCAACAAATGATTCTTAGCTCGAATAACTTT-AAT 513
Query 574 GGGGAAATACCAAGTACATTTTCCAAACTTGTTACAC-TGACTGATTTCCGTATCAGTGA 632
|| ||||| ||| ||||||| | ||||| || | ||| ||||| ||| | |||||
Sbjct 514 GGTGAAATTCCATCTACATTTGCAAAACTAACCAC-CTTGAGAGATTTTCGTGTAAGTGA 572
Query 633 CAATCAGTTCACTGGTACTATACCAGATTTCATCCAGAACTGGAC-AGGACTTGAGAAAC 691
||| ||||| | || || || |||||||||||||| || ||||| | | |||||| ||
Sbjct 573 CAACCAGTTGTCAGGAACAATTCCAGATTTCATCCAAAAATGGACTAAG-CTTGAGCGAC 631
Query 692 TGGTTATTCAAGCAAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGT-CTTCTGGGA 750
|| |||||||||||||||||||||||||||| ||||| | |||||||| | || || | |
Sbjct 632 TGTTTATTCAAGCAAGTGGTTTAGTTGGACCAATTCCCATTGCCATTGCTTCT-CTCGTA 690
Query 751 AACTTAACAGACTTGAGAATCA-CTGACTTT-AGTGGACCTGAATCTCCATTTCCGCCAC 808
| |||| |||||||||||||| | || ||| | |||||| |||||||||||||| | |
Sbjct 691 GAGTTAAAAGACTTGAGAATCAGC-GA-TTTGAATGGACCCGAATCTCCATTTCCAC-AG 747
Query 809 T-AATAAACATGACATCGTTGAAGA-ATTTGATTCTTAGGAACTGCAACCTTACAGGCA- 865
| || ||||| | | | || ||| ||| ||||||||||||||||| || ||||| |
Sbjct 748 TTAAGGAACATAAAAAAGATGGAGACATTA-ATTCTTAGGAACTGCAATCTCACAGG-AG 805
Query 866 ATTTACCTTCGTATCTTGGACGCAGA--ACCT--TAAAGAATTTGTTAGATCTTAGCTTT 921
| |||||| ||||||||| ||| |||| | | |||| ||||||||||||||
Sbjct 806 ACTTACCTGATTATCTTGGAA--AGATTACCTCCTTCA-AATTC-TTAGATCTTAGCTTC 861
Query 922 AACAAACTGAGTGGA-CCAATCCCCGAGAGTTATAC-AGCTCTTTCAGATGTAGATTACA 979
|| ||| | |||||| ||| |||| | | ||||| | |||| ||| | || |||||
Sbjct 862 AATAAATTAAGTGGAGCCA-TCCCTAACACTTATATTAA-TCTTAGAGACGGAGGTTACA 919
Query 980 TATATTTTACAAGTAACATGTTAAACGGGGAAGTACCACACTGGATGGCAGACAAAGGAG 1039
||||||||||| | ||||||||||||||| || ||| | ||||||| | | ||||||
Sbjct 920 TATATTTTACAGGAAACATGTTAAACGGGTCGGTTCCAGATTGGATGGTAAATAAAGGAT 979
Query 1040 ACACGATTGATCTT-GCTTACAATAACTTCTC 1070
| | ||||||||| | |||||| || |||||
Sbjct 980 ATAAAATTGATCTTAG-TTACAACAATTTCTC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152407172834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5