BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478900
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14850.2 | Symbols: TBL41 | TRICHOME BIREFRINGENCE-LIKE 41 |... 1531 0.0
> AT3G14850.2 | Symbols: TBL41 | TRICHOME BIREFRINGENCE-LIKE 41
| chr3:4995597-4997693 FORWARD LENGTH=1171
Length=1171
Score = 1531 bits (829), Expect = 0.0
Identities = 1012/1097 (92%), Gaps = 26/1097 (2%)
Strand=Plus/Plus
Query 1 TCTTCTCTGTGTTAAAATGGGTTC-AAGAGATAACGCCATTTCTTATGGCTCTGCATTAG 59
|||| |||||||| |||||||||| ||| ||||||||||||||| ||| |||||||||||
Sbjct 3 TCTTGTCTGTGTTGAAATGGGTTCAAAG-GATAACGCCATTTCTAATGACTCTGCATTAG 61
Query 60 TTTTATCG---CTTC-TC--CTTCTTC-T--CCT-C--CACGAAGCAG-AG--GGATGTG 104
|||||||| |||| || ||||||| | ||| | |||||||||| || |||||||
Sbjct 62 TTTTATCGCTTCTTCTTCTTCTTCTTCTTCCCCTGCTTCACGAAGCAGCAGAAGGATGTG 121
Query 105 ATATGTTCACGGGGCGGTGGGTGAAGGACGATTCTTACCCACTCTACGATCCCTCCACGT 164
| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 122 ACATGTTCACGGGGCGGTGGGTGAAGGACGATTCTTACCCTCTCTACAATTCCTCCACGT 181
Query 165 GTCCATTCATAAGACGTGAGTTCGGTTGCAAGAAAAATGGACGGCCAGATCTCGATTACT 224
|||| |||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 182 GTCCGTTCATAAGACATGAGTTCTCTTGCCAGAGAAATGGACGGCCAGATCTCGATTACT 241
Query 225 CTACCTTCAGATGGCAGCCTCTGTCCTGCAAATTAGCAAGGTTCAATGGAGTGGAGTTTT 284
|||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct 242 CTACCTTCAGATGGCAGCCTCTTTCCTGCAAATTAGCAAGGTTCAATGGATTGCAGTTTT 301
Query 285 TGGAGAAAAACAAAGGGAAGAAGATAATGTTTGTTGGTGATTCTCTCAGCCTAAATCAAT 344
|| |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 302 TGAAGAAAAACAAAGGGAAGAAGATTATGTTTGTTGGTGATTCTCTTAGTCTAAATCAAT 361
Query 345 GGCAATCTTTGACATGTATGCTTCACTCTTCTGTTCCCAATTCTTCGTATACTTTAACCA 404
||||||| ||| ||||||||||||| || |||||||| |||||| |||||||||||||||
Sbjct 362 GGCAATCGTTGGCATGTATGCTTCATTCCTCTGTTCCAAATTCTACGTATACTTTAACCA 421
Query 405 CACAAGGTAGTATCTCAACCTTCACATTCCAGGAGTATGGACTGGAATTGAAGCTTGATA 464
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 422 CACAAGGTAGTATATCAACCTACACATTCAAGGAGTATGGACTGGAATTGAAGCTTGATA 481
Query 465 GGAATGTATACT-TAGTAGATATAGTGAGGGAGAAGATTGGGAGAGTTTTGAAGCTTGAT 523
||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 482 GGAATGTTTA-TCTAGTAGATATAGTTAGGGAGAAGATTGGGAGAGTTTTGAAGCTTGAT 540
Query 524 TCGATCAATGATGGAAAAAATT-GGTCAGAAATGGATACTTTGATTTTCAATACTTGGCA 582
|||||||||||||||||||||| ||| ||| |||||||| |||||||| |||||||||||
Sbjct 541 TCGATCAATGATGGAAAAAATTGGGT-AGAGATGGATACATTGATTTTTAATACTTGGCA 599
Query 583 TTGGTGGAGCCGGAGAGGTCCTGCACAACCATGGGATTAT-ATTCAAATAGGGACTAACG 641
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 600 TTGGTGGAGTCGGAGAGGTCCTGCACAACCATGGGATT-TGATTCAAATAGGGACTAACG 658
Query 642 TTACAAAAGACATGGACCGTGTTGCTGCATTTGAGATCGCACTTGGGACTTGGGGAAAAT 701
|||||||||||||||||||||| || || ||||| || || |||||||||||||| ||||
Sbjct 659 TTACAAAAGACATGGACCGTGTGGCCGCGTTTGAAATTGCGCTTGGGACTTGGGGGAAAT 718
Query 702 GGGTTGATACCGTCGTAGATACTAAGAAAACTAGAGTCTTTTTTCAAGGAATTTCACCGT 761
|||| ||||||||| || ||||||||||||||||||||||||||||||||||||| || |
Sbjct 719 GGGTCGATACCGTCTTAAATACTAAGAAAACTAGAGTCTTTTTTCAAGGAATTTCTCCAT 778
Query 762 CTCATTACAAAGGAGTTCTGTGGGGCGAACCAGCGGCAAAGAGTTGCGTGGGACAGAAGG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTCATTACAAAGGAGTTCTGTGGGGCGAACCAGCGGCAAAGAGTTGCGTGGGACAGAAGG 838
Query 822 AACCACTTTTGGGGCCAAATTATCCAGGAGGATTACCAGCAGAAGTGGGAGTTTTGAAGA 881
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 839 AACCACTTTTGGGGACAAAATATCCAGGAGGATTGCCAGCAGAAGTGGGAGTTTTGAAGA 898
Query 882 GAGCACTCGGGAATATATCCAAACCGGTGACATTGCTAGACATTACGATGCTTTCGTTGC 941
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGCACTCGGGAAAATATCGAAACCGGTGACATTGCTAGACATTACGATGCTTTCGTTGC 958
Query 942 TTCGCAAAGATGCTCATCCTTCGGTTTACGGTCTAGGTGGCCAAAAGTCCT--G-TGACT 998
||||||||||||||||||||||||||||||||||||| || | ||| |||| | |||||
Sbjct 959 TTCGCAAAGATGCTCATCCTTCGGTTTACGGTCTAGGCGGGCGAAACTCCTCCGGTGACT 1018
Query 999 GCAGCCACTGGTGTCTCTCTGGCGTACCGGATACTTGGAATGAGATTCTTTACAATTATA 1058
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCAGCCACTGGTGTCTCTCTGGGGTACCGGATACTTGGAATGAGATTCTTTACAATTATA 1078
Query 1059 TGATTGAGTAAAAGAAA 1075
|| ||||||||||||||
Sbjct 1079 TGGTTGAGTAAAAGAAA 1095
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1076 AATTATAGCATTTGTTATTGTGATTGAT 1103
||||||||||||||||||||||||||||
Sbjct 1113 AATTATAGCATTTGTTATTGTGATTGAT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5