BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478902
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14860.2 | Symbols: | NHL domain-containing protein | chr3:... 2663 0.0
> AT3G14860.2 | Symbols: | NHL domain-containing protein | chr3:4998357-5001046
REVERSE LENGTH=1868
Length=1868
Score = 2663 bits (1442), Expect = 0.0
Identities = 1710/1836 (93%), Gaps = 32/1836 (2%)
Strand=Plus/Plus
Query 7 AGaaaa-aaaaaaa-CTGTTGTCATCTGCAAATTGGTTTCATTCTATCAG-T--TGTTGT 61
|||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 11 AGAAAAGAAAAAAATCTGTTGTCATCTGCAAATTGGTTTCATTCTATCAGTTGGTGTTGT 70
Query 62 --TGTCTTGGAATATGTAAATCGTCTCCT-CTAGGGTTCGATTCCAAC-TTCAATTGTAC 117
||| |||||| |||| ||||| || || |||||||||||||||||| | ||||||||
Sbjct 71 GGTGTGTTGGAAGATGTGAATCGCCT-CTACTAGGGTTCGATTCCAACATAAAATTGTAC 129
Query 118 -TTTGGAAGCTACAGAGAAAGAGATGGGCAAATCTCAGATTCTTCTACTCGCTGAGAGCT 176
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 130 TTTTGGAAGATACAGAGAAAGAGATGGGCAAATCTCAGATTCTTCTAAACGCTGAGAGCT 189
Query 177 TTACTTGTTC-TC--TAAAGACTTTGTTCACTTTATGGA---TC----GTCTTCA--CCT 224
|||||||||| || | || ||||| ||||||||||||| || |||||| |||
Sbjct 190 TTACTTGTTCTTCTTTCAATACTTTCTTCACTTTATGGATCTTCTTTACTCTTCACTCCT 249
Query 225 TTCCATTTCAAGCTCAAGCTGCTCCTTCTGGTTCTTTGATTAAGCACATGTCCTGGGTTC 284
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 250 TTCCATTTCAAGCTCAAGCTGCTCCTTCTGGTTCCTTGATTAAGCACATGTCATCGGTTC 309
Query 285 TCAAGTGGACTACTGGATCATCCTCTAAAATATCCCAATCAGACACTAATGTTCTTCAGT 344
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 310 TCAAGTGGACTACTGGATCATCCTCTAAATTATCCCAATCAGACACTAATGTTCTTCAGT 369
Query 345 TTGAGAATGGTTACTTGGTCGAAACTGTTGTCGAAGGAAACGAAATCGGTGTTGTTCCTT 404
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 370 TTGAGAATGGTTACTTGGTCGAAACTGTTGTGGAAGGAAACGATATTGGTGTTGTTCCTT 429
Query 405 ACAAGATTCGAGTTTCTCATGATGGTGAACTTTATGCTGTTGATGAACTTAATAGCAACA 464
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 430 ACAAGATTCGAGTTTCTGATGATGGAGAACTTTATGCTGTTGATGAACTTAATAGCAACA 489
Query 465 TCATGAAAATCACTCCTCCCTTGTCACAGTACAGCAGGGGAAGGTTGGTGGCTGGATCGT 524
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 490 TCATGAAAATCACTCCTCCCTTGTCTCAGTACAGCAGGGGAAGATTGGTGGCTGGATCTT 549
Query 525 TTCAAGGAAAGAC-GGGACATGCAGATGGAAAACCAAGTGAGGCTCGTTTTAATCATCCG 583
|||||||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 550 TTCAAGGAAAAACAGGG-CATGCAGATGGAAAACCGAGTGAGGCTCGTTTTAACCATCCG 608
Query 584 AGAGGTGTAACAATGGATGACAAAGGGAACGTTTATGTCGCTGATACTTTGAATCTCGCC 643
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AGAGGCGTTACAATGGATGACAAAGGGAACGTTTATGTCGCTGATACTTTGAATCTCGCC 668
Query 644 ATCCGAAAGATTGGAGATTCAGGTGTTACTACGATAGCTGGAGGG-AAATCTAATATAGC 702
|||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 669 ATCCGAAAGATTGGTGATTCAGGTGTTACTACGATAGCTGG-GGGAAAATCAAATATAGC 727
Query 703 TGGGTATAGAGATGGACCAAGTGAGGATGCAAAGTTCTCAAATGATTTTGATGTTGTATA 762
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 728 TGGGTATAGAGATGGGCCAAGTGAGGATGCAAAGTTCTCAAATGATTTTGATGTCGTATA 787
Query 763 TGTTCGGTCTACTTGCTCGCTGCTGGTCATTGACAGAGGAAATGCGGCTCTTCGCCAAAT 822
||||||| |||| |||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 788 TGTTCGGCCTACCTGCTCGTTGCTGGTCATCGATAGAGGAAATGCGGCTCTTCGCCAAAT 847
Query 823 CTCTCTCAGCGAAGAGGACTGTGACTATCAAGATGATAGCTCAATCTCTCTAACTGATAT 882
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTCTCTCAGTGAAGAGGACTGTGACTATCAAGATGATAGCTCAATCTCTCTAACTGATAT 907
Query 883 ACTCTTGGTTATTGGTGCTGTTCTCATTGGTTATGCTACTTGTTTGCTCCAGCAGGGTTT 942
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 908 ACTCTTGGTTATTGGTGCTGTTCTCATTGGTTATGCTACTTGTATGCTCCAGCAGGGCTT 967
Query 943 TGGAAATTCTTTCTTCTCAAAGACGCAGCTAGAATCAGAAACCAGCTTTGAAGAGGAGCA 1002
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||
Sbjct 968 TGGAAATTCTTTCTTCTCAAAGACGCAGGTAGGATCAGAAACCAGCTATGAAGAAGAGCA 1027
Query 1003 TCCAGGCAAAGAGAAACTCTCCCGACCTGTCCATGAGACAAA-AGTAACCAAGGAAGAAC 1061
|||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||||||||
Sbjct 1028 TCCAGGAAAAGAGAAACTCTCCCGGCCTGTCCATGAGA-AAACAATAACCAAGGAAGAAC 1086
Query 1062 CTGGTTGGCCATCGTTTGGGCAACTCATTATTGATCTCTGCAAACTCGCTCTCGATTTTA 1121
||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||| ||||
Sbjct 1087 CTGGTTGGCCATCATTTGGGCAACTCCTTACTGATCTCTGCAAACTTGCTCTCGAGTTTA 1146
Query 1122 TAACCAGCCACCTAGTTCCAACCCGATT-CACAACCAGCCATAATCTAAGGCCATTAAAA 1180
|||||||||||||||||||| ||||||| || ||||| || ||||||||||||||||||
Sbjct 1147 TAACCAGCCACCTAGTTCCAGCCCGATTCCA-AACCAACCCCAATCTAAGGCCATTAAAA 1205
Query 1181 GATAGACTCAAAATGCCTGAAGACGAACAAGAACCACCTCGAGTCCAAAGGCATACTGCC 1240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GATAGACTCATAATGCCTGAAGACGAACAAGAACCACCTCGAGTCCAAAGGCATACTGCC 1265
Query 1241 CCAGCACCAATCTCTGAATCGCGACATGCCCACATGCCTAAAGCTGATGATAGTTACCCG 1300
|||||||||||||| ||||| |||||||| ||| | |||||||||||||||||||||||
Sbjct 1266 CCAGCACCAATCTCAGAATCCCGACATGCTCACTTACCTAAAGCTGATGATAGTTACCCT 1325
Query 1301 GAACATAAGACCCCAAAGCTAAGATCAAGTAGTGTAATGAAGGACCCTGCTTTGTCAGCA 1360
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1326 GAACATAAGACGCCAAAGCTAAGATCAAGTAGTGTAATGAAGGACCCTACTTTGTCATCA 1385
Query 1361 TCCAAGCACCACCGGTCATCATCAAAACGGCAGGACTATGCTCAGTTCTATGCCTCAGGA 1420
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1386 TCCAAGCACCATCGGACATCATCAAAACGGCAGGACTATGCTCAGTTCTATGCCTCGGGA 1445
Query 1421 GAGGTTACCCCACCGAAGATCCATAAAGAGCGATCAAGGCGTCGCCATAGAGATAAAACA 1480
|||||| ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1446 GAGGTTGCCCAACCGAAGATCCATAAAGAGCGGTCAAGGCGTCGTCATAGAGATAAAACA 1505
Query 1481 ACCGAAACGGAACCAAAGCTAACAACATCAGATACGGTGAAGCCTGTAGAGTACAGTAAT 1540
||||| || |||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 1506 ACCGAGACAGAACCAAAGCCAACACCATCAGATACGGTGAAGCCTGTGGAGTACAGTAAT 1565
Query 1541 AGTTCAAAGTTTGATCATTACAACATGAGGAGCAGCAAGTATGGACCTGAAACTCCATTT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 AGTTCAAAGTTTGATCATTACAACATGAGGAGCAGCAAGTATGGACCTGAAACTCCATTT 1625
Query 1601 CGATTCTAGAAAGTAAAATCACATCCTCATCAGAACCCTTTTCTGAGTATGTTGTGCCCT 1660
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1626 CGATTCTAGAAAGTAAAATCACATACTCATTAGAACCCTTTTCTGAGTATGTTGTGCCCT 1685
Query 1661 TTCTTTGGTCCTTACTTTGGGGAGATTCATTATGTTTTCTTTTTGTTAGTTACTAAGAAA 1720
|||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1686 TTCTTTTGTCCTTGGTTTGAGGAGATTCCTTATGTTTTCTTTTTGTTAGTTACTAAGAAA 1745
Query 1721 ATCTTATTACACAGATGAAGAAAAAGAAGTTAAAAGGCTTTTCTTGTAACGAAGGATTGA 1780
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1746 ATCTTATTACACAGATGATGAAAAAGAGGTTAAA-GGCTTTTCTTGTAACGAAGGATTGA 1804
Query 1781 TGAATCATTACTGAAACTCTGATTTCTTTTGAACTT 1816
|||||||| ||||||| |||||| | || |||||||
Sbjct 1805 TGAATCATGACTGAAAATCTGATGTATTATGAACTT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5