BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478905
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14870.1 | Symbols: | Plant protein of unknown function (DU... 2213 0.0
> AT3G14870.1 | Symbols: | Plant protein of unknown function (DUF641)
| chr3:5003920-5005739 FORWARD LENGTH=1820
Length=1820
Score = 2213 bits (1198), Expect = 0.0
Identities = 1433/1544 (93%), Gaps = 26/1544 (2%)
Strand=Plus/Plus
Query 113 GATGGAGTCTGTGAAACCATTGGATGTTGTTGCTTCAGGAAAAGGAAAACTCAGACGCAC 172
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 251 GATGGAGTCTGTGAAACCATTGGATGTTGTTTCTTCAGGAAAAGGAAAACTCAGACGCAC 310
Query 173 ATTTGCTAAAGTTGTCAACATAAAAAAGCTAACCGGTGTTGTTCCAGAAGG---CGACAA 229
|||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 311 ATTTGCTAAAGTCATCAACATGAAAAAGCTAACCGGTGTTGTTCCAGAAGGTAACAACAA 370
Query 230 GGTTGAGAGAGTGAAGAAGAGCCAAGAAAAGCTGAAGCTGGATAAAGATTTAGTGAAGAA 289
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 371 GGTTGAAAGAGTGAAGAAGAGCCAAGAAAAGGTGAAGTTGGATAAAGATTTAGCAAAGAA 430
Query 290 TGCTGCAAATCTGTCTGAGTCATTTGACAAGCTGGAGGAAGAGTATGAGAAAAGACTGGC 349
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGCTGCAAATCTGTCTGAGTCCTTTGACAAGCTGGAGGAAGAGTATGAGAAAAGACTGGC 490
Query 350 TATGGAAGCTCTTCTTGCAAAGCTGTTTGCTACGATATCTTCCATAAAATCTGGTTATGC 409
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 491 CATGGAGGCTCTTCTTGCAAAGCTGTTTGCTACGATTTCTTCGATAAAATCTGGTTATGC 550
Query 410 GCAGTTGCAGTATGCTCAGTCTCCTTATGACCCAAATGGGATTCAGAAAGCAGACAACTT 469
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 551 GCAGTTGCAGTATGCTCAGTCTCCTTATGATCCAAATGGGATTCAGAAAGCAGATAACTT 610
Query 470 GGTAGTAGCAGAGCTGAAGACATTATCAGAGCTGAAACAGAGTTTCTTGAAGAACCAGCT 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 611 GGTAGTAGCAGAGCTGAAGACATTATCAGAGCTGAAACAGAGTTTCTTGAAGAAACAGCT 670
Query 530 TGATCCTAATCCTGATAGAACTCTTGTTCTTGCGGAGATTCAAGAGCTGAGAAGCGTCTT 589
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 671 TGATCCTAATCCTGATAGAACTCTTGTTCTTGCGGAGATTCAAGAGCTAAGAAGCGTCTT 730
Query 590 AAAGACTTATGAGATCACGGGGAAGAAGCTTGAGTGTCAGTTAAAGCTTAAAGAATCTGA 649
||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 731 AAAGACTTATGAGATCATGGGGAAGAAGCTGGAGTGTCAGTTAAAGCTCAAAGACTCTGA 790
Query 650 GATCATATTTCTTAAAGAAAAGTTTCAAGAATCCATGAGTCAGAACAAGTTGATGGAGAA 709
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 791 GATCATATTTCTCAAAGAAAAGTTTCAAGAATCCATGACTCAGAACAAGTTGATGGAGAA 850
Query 710 GAGACTAAACCAAAGTGGCCAACTTTGCAATCCATTGGATCATAATCTTCATCTATCGGC 769
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GAGATTAAACCAAAGTGGCCAACTTTGCAATCCATTGGATCATAATCTTCATCTATCGGC 910
Query 770 GCTAAATCCAACCCATTTCGCTACTTATCTGCACCACACTGTCAAATCAATCCGAGGATT 829
| ||| | | |||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 911 GGTAAGTTCGACCCATTTCGTTACTTATCTGCACCACACTGTCAAATCCATCCGAGGATT 970
Query 830 CGTCCAGTCAATGATTGAGCAGATGAAACTCGCAGCTTGGGACATCGATATGGCTGCTGA 889
|||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 971 CGTCAAGTTGATGGTTGAGCAGATGAAACTCGCTGCTTGGGACATCGATATGGCTGCTGA 1030
Query 890 -TTCGATACAACCTGAAGTGTTCTATTACAAGCAAGACCATAAGTGTTTTGCTTTCGAGC 948
|| || || ||||| || ||||||||||||||||||| ||||||||||| || ||||
Sbjct 1031 GTT-AATTCAGCCTGATGTACTCTATTACAAGCAAGACCACAAGTGTTTTGCCTTGGAGC 1089
Query 949 ATTACGTTTGCAAGATAATGTTTGAAGCGTTTCATCTACCTTACTTCTCAAACGAATCAT 1008
|||| || |||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1090 ATTATGTCTGCAAGATAATGCTTGAAGCTTTTCAACTACCTTACTTCTCAAACGAATCAT 1149
Query 1009 Cgaagaagaagagcagagaagacagag-agatgttctttgagagattcacagagcttaga 1067
||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1150 CGAAGAAGACGAGCAGAGAAGACAAAGCA-ATGTTCTTTGAGAGATTCACAGAGCTTAGA 1208
Query 1068 TCGATGAAACCAAAAGAGTACTTAGCATCACGGCCTAAATCAAGATTGGCTAAGTTTTGC 1127
||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1209 TCGATGAAACCAAGAGAGTATTTAGCATCTCGGCCTAAATCAAGATTGGCTAAGTTTTGC 1268
Query 1128 AGAGGGAAGTATTTGCAGCTCATACATCCAAAGATGGAGCACGCGTTCTTCGGACATTTG 1187
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1269 AGAACTAAGTATTTGCAGCTCATACATCCAAAGATGGAGCAGGCATTCTTCGGACATTTG 1328
Query 1188 CATCTAAGAAACCAAGTCAGTGCAGGTGAGTTTCCGGAGACAAGCTTGTGTACTGCGTTT 1247
|||| |||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||
Sbjct 1329 CATCAAAGAAACCAAGTCACTGCAGGGGAGTTTCCAGAGACGAGCTTGTGCACTGCGTTT 1388
Query 1248 CTCGAAATGGCGAAAAGGGTTTGGCTTTTACATTGCCTTGCTTTCTCCTTCGACCCTGAA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1389 CTCGAAATGGCGAAAAGGGTTTGGCTTTTACATTGCCTTGCTTTCTCCTTCGATCCTGAA 1448
Query 1308 GCTTCAATCTTTCAAGTATCTAGAGGATGCAGATTCTCCGAAGTGTACATGAAGAGCGTG 1367
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1449 GCTTCAATCTTTCAAGTATCTAGAGGTTGCAGATTCTCCGAAGTGTACATGAAGAGCGTG 1508
Query 1368 ACGGAGGAAGCGTTTTTCTCTCGGCCGGAGGAAGAAGAAAGCTCGTCGGAAACTGAGCCG 1427
||||||||||||||||||| | | |||| ||||||||||||||||||||||||| |||
Sbjct 1509 TCGGAGGAAGCGTTTTTCTCAC--C-GGAGCAAGAAGAAAGCTCGTCGGAAACTGAACCG 1565
Query 1428 GGAGTTGCGTTTACGGTGGTTCCTGGGTTTAGAATTGGGAAAACGTCGATACAATGTGAG 1487
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1566 GGGGTTGCGTTTACGGTTGTTCCTGGGTTTAGAATTGGGAAAACGACGATACAATGTGAG 1625
Query 1488 GTTTACCTCTCGCGTTCATGTCAACGCCGTCCGATCAGATAGATTCCGGCGATGACGTCA 1547
|| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1626 GTCTACCTCTCGCGTTCATGTCAACGCCGTCAGAGCAGATAGATTCCGGTGATGACGTCA 1685
Query 1548 CAGGGGTATTAGTGTAATTTAGGTGGTGGGGGACTTTTTGGGGG-AG-A--------GA- 1596
|||||||||||| |||||||| | ||||| |||||||||||| || | ||
Sbjct 1686 CAGGGGTATTAGGGTAATTTATCT--TGGGGAACTTTTTGGGGGTAGGAAAATATATGAG 1743
Query 1597 A-AA--TTTGCTGACCGTTGGATTAAGAGAAGAGGCAAGTATGT 1637
| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1744 AGAAAATTTGTTGACCGTTGGATTAAGAGAAGAGGCAAGTATGT 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5