BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478911
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2902 0.0
> AT3G14900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: embryo development; LOCATED
IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 13 growth stages; Has 17135 Blast hits to 10204
proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa
- 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other
Eukaryotes - 5958 (source: NCBI BLink). | chr3:5013291-5015292
REVERSE LENGTH=2002
Length=2002
Score = 2902 bits (1571), Expect = 0.0
Identities = 1760/1848 (95%), Gaps = 25/1848 (1%)
Strand=Plus/Plus
Query 1 GGAGAAGAAATGCTGAGTCAAGATTTATCCTTTTCTAAAACCCTGAACCCTAGCTTCTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 7 GGAGAAGAAATGCTGAGTCAAGATTTATCCTTTTCTAAAACCCTGAACCCTAGCTTTTCC 66
Query 61 TTCCGTAATTCTCCACTCAATTCCGGCGTACGGAGGATCGTTTCGGTTTTACCGGTTATC 120
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||
Sbjct 67 TTCCGTAAATCTCCACTCAATTCCGGGGTACGAAGGATCGTTTCGGTTTTACCGGCAATT 126
Query 121 ACCGAGAGGAATTATGC-TTTCAGTGTCAAAAGGTCGGAGCTTTTTCTTAGAGAAGATGG 179
||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||
Sbjct 127 ACCGAGAGGAATTATGCGTTT-AGTGTCAAAAGGTCGGAGCTTTTGCTCAGAGAAGATGG 185
Query 180 TAGATTCCGGCGAGACGTGCGGGCATTGGCGGGGAGGAGCAAGAAGAAGCTTGGAGGAGG 239
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 186 TGGATTCCGGCGAGACGTGCGGGCATTGGCCGGGAGGAGCAAGAAAAAGCTTGGAGGAGG 245
Query 240 TTCATCTGGTGGGAGAATAGAAGGAGATGCGGATATGAGGAAGCAGGTGAAGAGGAATGC 299
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 246 TTCATCTGGTGGAAGGATAGAAGGAGATTCGGATATGAGGAAGCAGGTGAAGAGGAATGC 305
Query 300 TCGTGATAAA-TCGAAGAAGCTAGCGGAATCTTTGTTTTATAGGTTGTATAATAACCCTG 358
|||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 306 TCGTGA-AAAGTCGAAGAAGCTAGCGGAATCTTTGTTTTATAGATTGTATAATAACCCTG 364
Query 359 ACAAGAGTCGGAGTCACATTCTCAGTAGTCATCCGGATAAGTTTACGGAGGAGGAGCTTG 418
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 365 ACAAGAGTCGGAGTCAGATTCTCAGTAGTCATCCGGATAAGTTTACTGAGGAGGAGCTTG 424
Query 419 AGATGATTGGGCTTGGTTACGATAGGATGGTTCGGTTTATGGATAAGGATGACCCGAGAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AGATGATTGGGCTTGGTTACGATAGGATGGTTCGGTTTATGGATAAGGATGACCCGAGAT 484
Query 479 TGCGTCATCCTTATGATTGGTTTAAGTATGGAGAGTTTGGACCTTACTCGTGGCGTGGTG 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 485 TGCGTCATCCTTATGATTGGTTCAAGTATGGAGAGTTTGGACCTTACTCGTGGCGTGGTG 544
Query 539 TTGTGGTTGGTGATCCGGTCCGTGGTACCATCTCTGATGAGTGTGTTACTATGATTGGTG 598
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 545 TTGTGGTTGGTGATCCGGTTCGTGGTACTATCTCTGATGAGTGTGTTACTATGATTGGTG 604
Query 599 AAGTGGAGAATCATGAAGAGTTTGAGAAGATTGAGCAGCATGAGATGAATATAGCTTTTC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAGTGGAGAATCATGAAGAGTTTGAGAAGATTGAGCAGCATGAGATGAATATAGCTTTTC 664
Query 659 AGAAAAGGGTTAAGGAGTTGGATTCTAATGTTGGTTTGAGGTATTTTTGGGTGTTTGTTA 718
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 665 AGAAGAGGGTTAAGGAGTTGGATTCGAATGTTGGTTTGAGGTATTTTTGGGTGTTTGTCA 724
Query 719 GGCATCCGAAATGGAGACTCAGTGAGTTGCCGTGGGAGCAATGGACGTTGGTTAGCGAAG 778
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 725 GGCATCCGAAATGGAGACTCAGTGAGTTACCGTGGGAGCAATGGACGTTGGTTAGTGAAG 784
Query 779 TGGTTGTGGAAGCGGATAAGAAGCAGAGGTTGGATAAATGGAATTTGATGGGGAGATTGG 838
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 785 TGGTTGTGGAAGCGGATAAGAAGCAGAGGTTGGATAAGTGGAATTTGATGGGGAGATTAG 844
Query 839 GGAACAAATCTCGGTCTTTGATATGTCAATGTGCGGCTTGGTTTAGACCTGATATTGTGT 898
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GGAACAAGTCTCGGTCTTTGATATGTCAATGTGCGGCTTGGTTTAGACCTGATATTGTGT 904
Query 899 ATGTGAAGAAGCCTGTGTTTCAGTGCAGGTTTGAGCCTCAAGAAGAtttttttAACTCGC 958
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 905 ATGTGAAGAAGCCTGTGTTTCAGTGTAGGTTTGAGCCTCAAGAAGATTTCTTTAACTCGC 964
Query 959 TTATCCCTTATCTAAACCCGGTAACGGAATCTGGATTTGTGTGTGAAGTGGAGGATGATG 1018
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 965 TTATCCCTTATTTAAACCCGGTGACGGAATCTGGATTTGTGTGTGAAGTGGAGGATGATG 1024
Query 1019 AAGGTAGAGTGGAGCTGAGTACTTATTATGGAGGGTTGTGTAAGATGTTGAAGGTGAGAC 1078
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1025 AAGGTAGAGTGGAGTTGAGTACTTATTACGGAGGATTGTGTAAGATGTTGAAGGTGAGAC 1084
Query 1079 AGACAGCTTTTGTGGATGATGTGGTGAATGCTTATGAGAAGTCGAGTGATGAAAAGAAGT 1138
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1085 AGACAGCTTTCGTGGATGATGTGGTGAATGCTTATGAGAAGTTGAGTGATGAAAAGAAGT 1144
Query 1139 CCAAAGTGTTGAAGTTCTTGCTTGGAAACCACCCGAACGAGTTGTTGCATCCGTATACAA 1198
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1145 CCAGAGTGTTGAAGTTCTTGCTTGGAAACCACCCGAACGAGCTGTTGCATCCGTATACAA 1204
Query 1199 AAGAGTGGAAAGCAAAGTTGGAGGAGATGGAGCTAGGGTGTGATGCTCCAGATGAAAATG 1258
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1205 AAGAATGGAAAGCAAAGTTGGAGGAGATGGAGTTAGGGTGTGATGCTCCAGATGAAGATG 1264
Query 1259 AGGATGAGACAAATTTTAATGGAAACTCAGAGAAGGCTGAATTCTCAGAATGGATTGAAG 1318
||||||||| | ||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1265 AGGATGAGATTAGCATTAGTGGAAGCTCAGAGAAGGCTGAGTTCTCAGAATGGATTGAAG 1324
Query 1319 ATGAAGCTGACAATAACGATGATGATG--G-TGA-G--G-TG--GA-GG--A-----A-G 1360
|||||||||||||| |||||||||||| | ||| | | || || || | | |
Sbjct 1325 ATGAAGCTGACAATGACGATGATGATGATGATGATGATGATGATGATGGTGAGGTGGAAG 1384
Query 1361 AAG-A--TGATGATGATAACATGGTTGTCGATGTGGAGGGAAACGATGAAGAAGACAGTT 1417
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1385 AAGTAGATGATGATGATAACATGGTTGTCGATGTGGAGGGAAACGTTGAAGAAGACAGTT 1444
Query 1418 TGGAAGATGAAATAGAGGAGTCGGATCCCGAAGAGGATGAGAGGTACTGGGAAGAGCAAT 1477
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1445 TGGAAGATGAAATAGAGGAGTCGGATCCGGAAGAGGATGAGAGGTACTGGGAAGAGCAAT 1504
Query 1478 TCAACAAAGCGACAAACAACGCGGAGAGGATGGAGAAGCTTGCGGAGATGAGTATGGTGG 1537
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1505 TCAACAAAGCGACAAACAATGCGGAGCGGATGGAGAAGCTTGCGGAGATGAGTATGGTGG 1564
Query 1538 TGTCAGATAAGTTTTATGAGAAGCAGTTAAAGGCATTGGAGGAAAGAGAGAAGGGAGAGA 1597
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1565 TGTCAGATAAGTTTTATGAGAAGCAGTTAAAGGCATTGGAGGAACGAGAAAAGGGAGAGA 1624
Query 1598 TTGAAGGAGATGAGTTGGAAATGAGAGGTAAGAAGGCAAAAGTGAAGCCAGAAGAGTGGA 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1625 TTGAAGGAGATGAGTTGGAAATGAGAGGTAAGAAGGCAAAAGTGAAGCCAGAAGAATGGA 1684
Query 1658 AGACAGTAGGATATGGAAGGTGGATGAAGAAGATAAAGAAGAGTAGGATCCCACCTGAGC 1717
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1685 AGACAGTAGGATATGGAAGGTGGATGAAGAAGATAAAGAAGAGTAGGATTCCACCTGAGC 1744
Query 1718 TGTTTCTCCGTGCTGCTGTTAGGCCTTTTGTTTACAGAAACCTTGTCAAAGAGATTGTTC 1777
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1745 TCTTTCTCCGTGCTGCTGTTAGGCCCTTTGTTTACAGAAACCTTGTCAAAGAGATTGTTC 1804
Query 1778 TTACAAGACACGCCATTTTGGAAGGCGAGATTGGTCAGAAGGAGTGAT 1825
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 TGACAAGACACGCCATTTTGGAAGGCGAGATTGGTCAGAAGGAGTGAT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94728428415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5