BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478916
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14930.1 | Symbols: HEME1 | Uroporphyrinogen decarboxylase |... 2490 0.0
> AT3G14930.1 | Symbols: HEME1 | Uroporphyrinogen decarboxylase
| chr3:5020570-5022959 FORWARD LENGTH=1662
Length=1662
Score = 2490 bits (1348), Expect = 0.0
Identities = 1513/1593 (95%), Gaps = 9/1593 (1%)
Strand=Plus/Plus
Query 1 TCTTCAAACTCTTAGGTTCTTCTCTAATTGAAAATGAGCTTATCATCGCCAACCAGTACT 60
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 73 TCTTCAAACTCTTGGGTTCTTCTCTGATTGAAAATGAGCTTATCATCGCCAACCAGTGCT 132
Query 61 TGTAGCTCGTCGAGATGTTACTCCTCGGGATTGTCGTTGCCGATTGGATTTCGATCGAAT 120
||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 133 TGTAGCTCGTCCAGATGTTACTCCTCGGGATTATCGTTTCCGATTGGATTTGGATCGAAT 192
Query 121 CCCATTAATGTTGGATTGGTTTGTTACCCAAAAAGACACAATATTGCTGCTCGGAAGTTC 180
||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 193 CCCATCAATGTGGGATTGGTTTGTTACCCAAAAAGATACAGTATTGCTGCTCGGAAGTTC 252
Query 181 GTCGTGGCTTGCTCCTCCTCCTCTTCTGATCCACTTTTGGTTAAGGCTGCGAAAGGGCAA 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 253 GTAGTGGCTTGCTCCTCCTCCTCTTCCGATCCACTTTTGGTTAAGGCTGCAAAAGGGCAA 312
Query 241 GCCGTGAGTCGTCCTCCAGCTTGGATGATGAGGCAAGCAGGAAGGTATATGGCTGTTTAC 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GCCATAAGTCGTCCTCCAGCTTGGATGATGAGGCAAGCAGGAAGGTATATGGCTGTTTAC 372
Query 301 CAAAAGCTCGCCAAGAAACACCCGTCCTTCAGAGAGAGGTCAGAGAACACTGATCTAATA 360
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 373 CAAAAGCTCGCCAAGAAACATCCGTCCTTCAGAGAGAGATCAGAGAACACTGATCTAATA 432
Query 361 GTGGAAATCTCTTTGCAGCCTTGGCAAGCATTCAGACCAGACGGTGTCATCATTTTCTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTGGAAATCTCTTTGCAGCCTTGGCAAGCATTCAGACCAGACGGTGTCATCATTTTCTCT 492
Query 421 GACATCCTCACGCCTTTACCCGCGTTTGGTGTCCCTTTTGACATTGAAGAGGTGAAAGGC 480
||||||||||| |||||||| || || |||||||||||||| ||||||||||| |||||
Sbjct 493 GACATCCTCACCCCTTTACCTGCATTCGGTGTCCCTTTTGATATTGAAGAGGTAAAAGGT 552
Query 481 CCTGTGATCCAATCTCCCATCCGAACTGAAGAAGATTTAAAAAGATTGCATGCCATTGAT 540
||||| ||||||||||| |||||||||||||||||| | || ||||| ||| ||||||||
Sbjct 553 CCTGTAATCCAATCTCCTATCCGAACTGAAGAAGATATGAAGAGATTACATCCCATTGAT 612
Query 541 TTCGAGAAACTACAGTTTGTTGGAGATTCTCTCAAGATTTTGAGACGAGAGGTTGGGGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TTCGAGAAACTACAGTTTGTTGGAGATTCTCTCAAGATTTTGAGACGAGAGGTTGGGGAA 672
Query 601 CATGCTGCGGTATTGGGTTTCGTTGGAGCGCCTTGGACAATTGCAACATATATTGTTGAA 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CATGCTGCGGTGTTGGGTTTCGTTGGAGCGCCTTGGACAATTGCAACATATATTGTTGAA 732
Query 661 GGGGGAACAACTCGGACATATACAGTCATAAAGAATATGTGCCACACTGCACCAAATGTA 720
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 733 GGAGGAACAACTCGAACATATACAGTCATAAAGAATATGTGCCACACTGCACCAGATGTA 792
Query 721 TTGAGAGCTCTATTATCTCATTTAACCAAGGCCATTACCGAGTATGTTGTTTACCAAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 793 TTGAGAGCTCTATTATCTCATTTAACCAAGGCCATTACCGAGTATGTGGTTTACCAAGTT 852
Query 781 GAGCATGGAGCTCACTGCATACAAATATTCGATTCATGGGGTGGCCAACTGACTCCTGAG 840
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 853 GAGCACGGAGCTCACTGCATACAAATATTCGATTCCTGGGGTGGCCAACTGACTCCGGAG 912
Query 841 ATGTGGGAGCGCTGGTCCAAGCCCTACATCGAAGAGATCATTCATGCTGTAAAGAAAAGA 900
|||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 913 ATGTGGGAGCGCTGGTCCAAACCATACATTGAAGAGATCATACATGCTGTAAAGAAAAGA 972
Query 901 TGTCCAGATACGCCGATAGTTTTCTACATCAATGGAAATGGTGGCCTTCTTGAGCGAATG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TGTCCAGATACGCCGATAGTTTTCTACATCAATGGAAATGGTGGCCTTCTTGAGCGAATG 1032
Query 961 AAAGGAACTGGAGCTGATGTTATTGGACTTGACTGGACTGTAGATATGGCTGATGGAAGG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 AAAGGAACTGGAGCTGATGTTATTGGACTTGACTGGACTGTAGATATGGCTGATGGAAGG 1092
Query 1021 AGGCGATTGGGAAGCGAGGTTAGTGTGCAGGGAAATGTTGATCCAGCCTACCTATTCTCT 1080
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1093 AGGCGATTGGGAAGCGAGGTAAGTGTGCAGGGAAATGTTGATCCAGCTTACCTATTCTCT 1152
Query 1081 CCGCTTCCTGCTTTAACCGAAGAAATTGAGAGAGTTGTGAAGTGTGCTGGACCAAAAGGG 1140
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1153 CCGCTTCCTGCTTTGACCGAAGAAATTGAAAGAGTTGTGAAGTGTGCTGGACCAAAAGGG 1212
Query 1141 CATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCAT 1272
Query 1201 TTCTTTGAAACCGCTAGAAACATGGATTACCAAACACTTTTCCAAAATCATGTTCCTGCA 1260
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TTCTTTGAAACCGCTAGAAACTTGGATTACCAAACACTTTTCCAAAATCATGTTCCTGCA 1332
Query 1261 GAAAAAGCTGAATCTGAATTGGTTGCCTGAGAAATGGAATCAGAGAAAA-GTTCCATGTC 1319
|||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 1333 GAAAAAGCTGAACCTGAATTGGTTGTCTGAGAAATGGAATGAGAGAAAAAGTTCCATGTC 1392
Query 1320 TGACCCATAATCGATGCGAGATTTGGTTACTTGCTATGAGATACATTCGAAGCTGTCCAG 1379
|||||| |||||||||| ||| ||||| ||||||||||||||| || |||||||||||||
Sbjct 1393 TGACCCTTAATCGATGCTAGAGTTGGTAACTTGCTATGAGATATATGCGAAGCTGTCCAG 1452
Query 1380 TTTTTGTTTGGCTTGCCTGTGGATTTCCAATCTTCTGGACCAAGCTGTACTTAAC-TCTT 1438
|||||||||||||||| || |||||||||||||||||||||||||| | |||||| | ||
Sbjct 1453 TTTTTGTTTGGCTTGCTTGAGGATTTCCAATCTTCTGGACCAAGCTCTGCTTAACGT-TT 1511
Query 1439 AACAATGTATTGAGTTGCTCATAGGCTTCAAATGCTGCTGCTTCTTTTGGAGATATGACT 1498
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1512 AACAATGTATTGAGTTGCTCCTAGGCTTCAAATGTTGCTGCTTCTTTTGGAGATATGACT 1571
Query 1499 CTGGTTAAAATTTTAAATAAACATT-A---ATCTGGTTAATCTCAAACCTTTGCTCTGTT 1554
||||||||| ||| || ||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1572 CTGGTTAAAGTTT-AACCAAACATTCATTTATCTGGTTAATCTCAAACCTTTGCTATGTT 1630
Query 1555 TCTTATCCCATTATTTTTCATATGGTTCGTTCT 1587
| |||||||| | ||||||||||||||| ||||
Sbjct 1631 TGTTATCCCACT-TTTTTCATATGGTTCTTTCT 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5