BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478918
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14950.1 | Symbols: TTL2 | tetratricopetide-repeat thioredox... 3203 0.0
AT1G53300.1 | Symbols: TTL1 | tetratricopetide-repeat thioredox... 713 0.0
> AT3G14950.1 | Symbols: TTL2 | tetratricopetide-repeat thioredoxin-like
2 | chr3:5030216-5032892 REVERSE LENGTH=2166
Length=2166
Score = 3203 bits (1734), Expect = 0.0
Identities = 2030/2171 (94%), Gaps = 28/2171 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAAGCTCAAGAAACCTATACTAGAATCTAACTGTGTCGCCGATAAGCTCTGTGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAAGCTCAAGAAACCTATACTAGAATCTAACTGTGTCGCCGATAAGCTCTGTGAC 60
Query 61 TCATTGAATATGGAAGACAAT---AATAATAAACCAGATACTATTAATGTCGATCTTGGA 117
|| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCGTTGAATATGGAAGATAATAACAATGATAAACCAGATACTATTAATGTCGATCTTGGA 120
Query 118 TCACCAATTACACCGCTTCAGACTCGGCCGAGTGGA--CTC-ACTTCCACCAGTAGTTGC 174
||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
Sbjct 121 TCACCAATTACACCGCTTCAGACTCAGCCGAGTGGACTCTCTTCTTCCACCAGTAGTTTC 180
Query 175 AGTTCTAGCTCGTCTGGATCGGTTACAGGTCATGCCGGACATGCT---CCGGTTACaaaa 231
||||||||||| ||||||||||| |||||||||||||||||| || |||||||||| |
Sbjct 181 AGTTCTAGCTCTTCTGGATCGGTCACAGGTCATGCCGGACATACTCCCCCGGTTACAAGA 240
Query 232 aaaCCCGATTCCGATCAGCCCCTTCCCTCCGCCGCTAAGTATAAATCTAGCACTCCT-TC 290
||||| ||||||| ||||||| ||||||||||| |||||| ||||||||||| | || ||
Sbjct 241 AAACCAGATTCCGTTCAGCCCGTTCCCTCCGCCTCTAAGTCTAAATCTAGCAAT-CTCTC 299
Query 291 CTCCGCCGCTAAATCTTCAAAGTCTAGTACTACT--C-CCTCCGCCGCTCAATTTGGTGG 347
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 300 TTCCGCCGCGAAATCTTCAAAGTCTAGTACTACTCCCTCCTCCGCCGCTCAATTTGGTGG 359
Query 348 GTC-TAGTAGTCCTGCCAGCGCTCGATCTCGTTCAAGCAGTCAAGTTGGTGCTAAAACC- 405
||| || |||||||||| | |||| ||| ||| ||||||||||||||||||||||||||
Sbjct 360 GTCATA-TAGTCCTGCCCGTGCTCAATCACGTGCAAGCAGTCAAGTTGGTGCTAAAACCG 418
Query 406 GGTA-AT-ATGAGCCCATTATCAAACTCTGCTTCGGTTACGACAAAACCATCTGGTAATA 463
|| | || || || |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 GGAATATAATAAGACCATCATCAAACTCAGCTTCGGTTACGACAAAACCATCTGGTAATA 478
Query 464 AAAGCTCTGTTTCGTCGAAACAACATG--TCCAAATAGTTCCCGCCGGGAACCTTTTCCC 521
||||||||||||||||||||| | | | || ||||| ||||||||||||||||| ||||
Sbjct 479 AAAGCTCTGTTTCGTCGAAAC-AGA-GCCTCAAAATACTTCCCGCCGGGAACCTTGTCCC 536
Query 522 ATCGGGGAAGGTACAAATTACAGGCATGACTCAAGAAAAACCAAGAAGCATGGTTCTTGG 581
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATCGGGGAAGGTACAGATTACAGGCATGACTCAAGAAAAACCAAGAAGCATGGTTCTTGG 596
Query 582 ACCAGGGGCTAAATCATACGGTTATGGTAGTATAATGCGAGCAAACAACTTATCTCCGGC 641
|||||| ||||||||||||||||| ||||| || || |||| |||||||||||||||||
Sbjct 597 ACCAGGTGCTAAATCATACGGTTACGGTAGCATTATACGAGGAAACAACTTATCTCCGGT 656
Query 642 GAAGCCAAC---GATGTCCGAGTCTTCCTCTGTTTTGCCTTTAACTCTCAGTAATAACTC 698
||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAAGCCAACGATGATGTCTGATTCTTCCTCTGTTTTGCCTTTAACTCTCAGTAATAACTC 716
Query 699 TAGCGGTGGTCCTGACACATATACATCGTGGAAGATAGCTATATATGGTTCAAATCCAGA 758
|| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 717 TACCGGTGGTCCTGATGCATATACATCGTGGAAGATAGCTATATATGGTTCTAATCCTGA 776
Query 759 AGAAGTAAAGAGATTTGGTAACGAAATGTTCAAGAAAGGTTGTTTTACTGAGGCTTTGAA 818
|||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 777 AGAAGTAAAGAGGTTTGGTAACGAAATGTTCAGGAAAGGTTGTTTCGCTGAGGCTTTGAA 836
Query 819 GTTGTATGATCGAGCAATTGAGCTTTCACCGAGTAATGCTACTTACCATAGCAATAGAGC 878
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||
Sbjct 837 GTTGTATGATCGAGCAATAGAGCTATCACCGAGTAATGCTACTTACCATAGCAACCGTGC 896
Query 879 AGCTGCATTATCAAGTTTGGGACAGATTGGTGAAGCTGTGAATGAATGTGAAATGGCTAT 938
||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 897 AGCTGCATTGTCGAGTTTGGGTCAGATTGGTGAAGCTGTGAATGAATGTGAAATAGCTAT 956
Query 939 CAAATTAGATCCAAAATTTGCAAGGGCTCATCACCGTTTAGCCTCATTGCTTCTTAGATT 998
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAAATTAGATCCAAACTTTGCAAGGGCTCATCACCGTTTAGCCTCATTGCTTCTTAGATT 1016
Query 999 AGGTTATGTGGATAATGCAGGGATACATTTTTATTCAGTGGAGGAACCAGCAGATCCCAC 1058
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 1017 AGGTTATGTGGATAATGCAGGGATACATTTATATTCAGTGGAGGAACCATTAGATCCAAC 1076
Query 1059 TCTAGTTAAAATGCTTCAACAAGTAGATAAACACTTGAACAAATGCACATATGCAAGAAG 1118
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGTGGTGAAGATGCTTCAACAAGTAGATAAACACTTGAACAAATGCACATATGCAAGAAG 1136
Query 1119 ACGCGGTGAATGGAATATTGTTTTGACAGAAGTAAGTGCAGCCATTGCCTCTGGAGCTGA 1178
|||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1137 ACGCGGTGAATGGAGTATTGTTTTGACTGAAGTAAGTGCAGCCATTGCGTCTGGAGCTGA 1196
Query 1179 CTCTTCTCCTCAGCTAGCTATGTGTAAAGTTGAAGCACTACTGAAACTTCTACGGCTTGA 1238
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1197 TTCTTCTCCTCAGCTAGCTATGTGTAAAGCTGAAGCACTACTGAAACTTCTTCGGCTTGA 1256
Query 1239 TGATGCTCAAAGAGTACTAGAATGTGTCCCCAAAGTAGAACCATTCCCAGCTTCTTTCTC 1298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1257 TGATGCTCAAAGAGTACTAGAATGTGTCCCCAAAGTGGAACCATTCCCAGCTTCTTTCTC 1316
Query 1299 ACATACTCGGGTTTTCGATATGAACTCTGAAGCTTACACATCTTTTGTCAAATCCCAAAT 1358
|||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1317 ACATACTCGGTTTTTCGATATGATCGCTGAAGCTTACACATCTTTTGTCAAATCCCAAAT 1376
Query 1359 GGAGTTGGCTCTAGGAAGGTTTGAAAATGCAGTTACAACTGCAGAGAAAGCTTCAGAGAT 1418
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1377 GGAGTTGGCTCTAGGAAGGTTTGAAAATGCAGTTGTAACTGCAGAGAAAGCTTCAAAGAT 1436
Query 1419 TGATCCAAAAAACAATGAAGTTGAAATTTTGTATAAAAATGTTAGATTAATTACTAGGGC 1478
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1437 TGATCCACAAAACAATGAAGTTGAAATTTTGTATAAAAATGTTAGATTAATAACTAGAGC 1496
Query 1479 GCGTGATCGTGGTAACGATCTTTATGAATTAGAAAGATACACTGAAGCGAGATCAGCTTA 1538
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1497 GCGTGATCGTGGTAACGATCTTTATGAACTAGAAAGATACACTGAAGCAAGATCAGCTTA 1556
Query 1539 TGCGGAAGGCCTTAAGTATGATCCATCCAATGCTACTCTGTTATGTCATAGAGCAGATTG 1598
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1557 TGCAGAAGGCCTTAAGTATGATCCATCCAATGCTACTCTGTTATGTTACAGAGCAGATTG 1616
Query 1599 TTTCTTTAAAGTTTGGA-TGTGGGAGAGCTCAATAGAAGATTGTAACCATGCGTTGCTCA 1657
||||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1617 TTTCTTTAAGGTT-GGAATGTGGGAGAGCTCAATAGAAGATTGTAACCATGCATTGCTTA 1675
Query 1658 TTCTACCGAGTTACACAAAGCCTCGTCTTCAAAGAGCTGCTTCATATAGCAAGTTGGAAA 1717
| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1676 TACTACCGAGTTACACAAAGCCTCGTCTTCAAAGAGCTGCTTTATATACCAAGTTGGAAA 1735
Query 1718 GATGGGCTGAAGCAGTGAGCGATTACGAGATCTTAAGAAAGGAACTGCCTTATGACAAGG 1777
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1736 GATGGGCTGAAGCAGTGAGTGATTATGAGATCTTAAGAAAGGAACTGCCTTATGACAAGG 1795
Query 1778 AAATTGCTGAATCTTTATTTCATGCTCAAGTTGCATTGAAGAAATCTCGCGGCGAAGTAG 1837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1796 AAATTGCTGAATCTTTATTTCATGCTCAAGTTGCATTAAAGAAATCTCGCGGCGAAGTAG 1855
Query 1838 TTCTAAACATGGAATTTGGAAGTGAAGTTGAGGAAATTTCTAGTCTTGAAGAGTTAAAAG 1897
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1856 TTCTAAACATGGAATTTGGAGGTGAAGTTGAGGAAATATCTAGTCTTGAAGAGTTAAAAG 1915
Query 1898 CTGCATTAACTCGTCCTGGTTCTGATCCACAATGCAAGGAGATGTCTACTTTCATGGACG 1957
|||||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||
Sbjct 1916 CTGCATTAACTCGTCCTGCTTCTGATCCACAATGCAAGGAGATATCCACTTTCGTGGACG 1975
Query 1958 CACTATGTGTTGGTTACCCATCTTTGCATTTCCTTAAGGTGGAGATTGGAAAATGTCCAG 2017
||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1976 CACTATGTGTTCGTTACCCATCTTTGCATTTCCTCAAGGTGGAGATTGTAAAATGTCCAG 2035
Query 2018 AAGTGGGTAATGCAGAGAGAGTGAGAGTTGTACCAACATTCAAGATATACAAACTTGGGA 2077
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2036 AAGTGGGTAATGCAGAAAGAGTGAGAGTTGTGCCAACATTTAAGATATACAAACTTGGGA 2095
Query 2078 TTCGGATGAAAGAGATTGTGTGTCCAAGCAAGGAAGCACTGGAGAAAACAGTGAGGCACT 2137
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2096 TTCGGATGAAAGAGATTGTGTGTCCAAGCAAGGAAGCGCTGGAGAAAACAGTGAGGCACT 2155
Query 2138 ATGGCCTTTAG 2148
|||||||||||
Sbjct 2156 ATGGCCTTTAG 2166
> AT1G53300.1 | Symbols: TTL1 | tetratricopetide-repeat thioredoxin-like
1 | chr1:19879422-19882375 FORWARD LENGTH=2404
Length=2404
Score = 713 bits (386), Expect = 0.0
Identities = 936/1193 (78%), Gaps = 72/1193 (6%)
Strand=Plus/Plus
Query 745 GGTTCAAATCCAGAAGAAGTAAAGAGATTTGGTAACGAAATGT-TCAAGAAAGG-TTGTT 802
||||| || |||| ||||| |||||| | || || ||||||| | | |||||| ||| |
Sbjct 974 GGTTCGGATTCAGAGGAAGTGAAGAGAGTAGGGAATGAAATGTAT-AGGAAAGGTTTG-T 1031
Query 803 TTACTGAGGCTTTGAAGTTGTATGATCGAGCAATTGAGC-TT-TCACCGAGTAATGCTAC 860
||| |||||||||||||||||||||| |||||| | ||| || || |||| ||| ||| |
Sbjct 1032 TTAATGAGGCTTTGAAGTTGTATGATAGAGCAA-T-AGCTTTATCTCCGACTAACGCTGC 1089
Query 861 TTACCATAGCAATAGAGCAGCTGCATT-ATCAAGTTTGGGACAG-ATTGGTGAAGCTGTG 918
||||| || ||| |||| || ||||| || ||||| | | ||||||||||||||
Sbjct 1090 TTACCGGAGTAATCGAGCTGCCGCATTGAT-TGGTTTGTCTC-GAATTGGTGAAGCTGTT 1147
Query 919 AATGAATGTGAA-ATGGCTATCAAATTAGATCCAAAATTTGCAAGGGCTCATCACCGTTT 977
|| ||||||||| || ||| | | || ||||| || | || ||| ||||||||||||||
Sbjct 1148 AAGGAATGTGAAGAT-GCTGTTAGATCGGATCCTAACTATGGAAGAGCTCATCACCGTTT 1206
Query 978 AGCCTCATTGCTTCTTAGATTAGGTTATGTGGATAATGCAGGGATA-CAT-TTT-TATTC 1034
|||| ||||||| ||||||||||| | || ||| |||| ||| | ||| ||| | |||
Sbjct 1207 GGCCTTATTGCTTATTAGATTAGGTCAGGTTAATAGTGCAAGGA-AGCATCTTTGTTTTC 1265
Query 1035 AGTGGAGGA-ACCAGCAGATCCCACTCTAGTT--AAAATGCTTCAA-CAAGTAGATAAAC 1090
| | ||| |||| ||||||||| | |||| | || |||| || | ||| || ||||
Sbjct 1266 --TTG-GGAGACCATCAGATCCCA-TGGAGTTGCAGAA-GCTTGAAGC-AGTGGAGAAAC 1319
Query 1091 ACTTGAACAAATGCACAT-ATGCAAGAAGACG-CGGTGAATGGAATATTGTTTTGACAGA 1148
| |||| ||||| | |||| ||||| | | ||| ||||| | ||||||| |||
Sbjct 1320 ATTTGATTAAATG-TGTTGATGCGCGAAGA-GTCACTGATTGGAAAACAGTTTTGATAGA 1377
Query 1149 AGTAAG-TGCAGCCATTGCCTCTGGAGCTGACTCTTCTCCTCAGCTAGCTATGTGTAAAG 1207
|| || ||| || |||| ||||||||||| | |||||| |||||| |||||||||||
Sbjct 1378 AG-CAGATGCTGCTATTGTTTCTGGAGCTGATTTTTCTCCACAGCTATTTATGTGTAAAG 1436
Query 1208 TTGAAGCACTAC-TGAAACTTCTA-CGGCTTGATGATG--C--TCAAAGAGTACTAGAAT 1261
| |||||| | | ||||||||| | ||||||||||||| | |||||| || |||||
Sbjct 1437 TAGAAGCA-TTCTTGAAACTTC-ACCGGCTTGATGATGCACAGTCAAAG-CTATTAGAA- 1492
Query 1262 GTGTCCCCAAAGTAGAACCATTCCCAGCT-TCTT-TCTCACATACTCGGGTTTTC-GATA 1318
|| | || |||||||| || ||||| | | |||| | || || |||| ||||||| | ||
Sbjct 1493 GT-T-CCTAAAGTAGAGCCGTTCCCTG-TATCTTGT-TCGCAGACTC-GGTTTTCTGGTA 1547
Query 1319 TGAAC-TCTGAAGCTTACACATCTTTTGTCAAATCCCAAATGGAGTTGGCTCTAGGAAGG 1377
|| | | ||||||||| | || |||||||||| | ||||| ||| ||||| ||||||||
Sbjct 1548 TG-GCTTGTGAAGCTTATATATATTTTGTCAAAGCTCAAATCGAGATGGCTTTAGGAAGG 1606
Query 1378 TTTGAAAATGCAGTTACAACTGCAGAGAAAGCTTCAG--AGATTGATCCAAAAAACAATG 1435
|||||||||||||||| |||| |||||||| | || | || ||||||| | ||| |
Sbjct 1607 TTTGAAAATGCAGTTATGGCTGCTGAGAAAGC-T-AGCCAAATCGATCCAAGATGCAACG 1664
Query 1436 AAGTTGAAATTTTGTATAAAAATGTTAGATTAATTACTAGGGCGCGTGATCGTGGTAACG 1495
|||||| || || |||| | ||||| ||| || ||||||| |||| |||||| || |
Sbjct 1665 AAGTTGCTATGTTACATAATACTGTTACATTGGTTGCTAGGGCTCGTGCTCGTGGCAATG 1724
Query 1496 ATCTTTATGAATTAGAAAGATACACTGAAGCGAGATCAGCTTATGCGGAAGGCCTTAAG- 1554
|||||||| ||| |||||||||||||||||| || ||||||||||| |||||||||| |
Sbjct 1725 ATCTTTATAAATCAGAAAGATACACTGAAGCAAGTTCAGCTTATGCTGAAGGCCTTAGGC 1784
Query 1555 TATGATCCATCCAATGCTACTCTGTTA-TGTCATAGAGCAGATTGTTTCTTTAAAGTTTG 1613
| |||||| | ||| |||| ||| || ||| || |||||| ||||| |||||| |||
Sbjct 1785 T-TGATCCTTGCAACGCTATTCT-ATATTGTAATCGAGCAGCTTGTTGGTTTAAA-CTTG 1841
Query 1614 G-ATGTGGGAGA-GCTCAATAGAAGATTGTAACCATGCGTTGC-TCATTCTACCGAGTTA 1670
| |||||||| | |||| || |||||||||||||| ||| ||| | | || ||| |||||
Sbjct 1842 GAATGTGGGA-ACGCTCGATTGAAGATTGTAACCAAGCGCTGCGTTA-TCAACCAAGTTA 1899
Query 1671 CACAAAGCCTCGTCTTCAAAGAGCTGCTTCATATAGCAAGTTGGAAAGATGGGCTGAAGC 1730
||||||||| | ||||| || ||||| ||| |||||||| |||||||||||| | ||
Sbjct 1900 CACAAAGCCACTTCTTCGGAGGGCTGCCTCAAATAGCAAGATGGAAAGATGGGGAGCTGC 1959
Query 1731 AGTGAGCGATTACGAGATCTTAAGA-AAG-GAACTGCCTTATGACAAGGAAATTGCTGAA 1788
|||||| ||||| ||| ||| || ||| ||||| ||| ||||||||||| ||||||||
Sbjct 1960 AGTGAGTGATTATGAGGCCTT--GATAAGAGAACTTCCTCATGACAAGGAAGTTGCTGAA 2017
Query 1789 TCTTTATTTCATGCTCAAGTTGCATTGAAGAAATCTCGCGGCGAAGTAGTTCTAAACATG 1848
|||||||| ||||||||||||||||||||||||||||| || |||| |||| |||| |||
Sbjct 2018 TCTTTATTCCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTTTTAAATATG 2077
Query 1849 GAATTTGGAAGTGAAGTTGAGGAAATTTCTAGTCTTGAAGAGTTAAAAGCTGC 1901
|||||||| | ||||| |||||||||| |||||||||| |||| ||| ||||
Sbjct 2078 GAATTTGGTGGCGAAGTAGAGGAAATTTATAGTCTTGAACAGTTTAAATCTGC 2130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106525556490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5