BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478920
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13610.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1749 0.0
> AT3G13610.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:4449374-4450811
FORWARD LENGTH=1355
Length=1355
Score = 1749 bits (947), Expect = 0.0
Identities = 1179/1285 (92%), Gaps = 40/1285 (3%)
Strand=Plus/Plus
Query 34 TTCCAATGGCTCCAACACTCTCAACAACCCAATTCTCAAACCCAGCTGAAGTAACCGACT 93
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 70 TTCCAATGGCTCCAACACTCTTGACAACCCAATTCTCAAATCCAGCTGAAGTAACCGACT 129
Query 94 TCGTAGTTC-ACAAAGGAAATGGTGTAAAGGGTTTATCAGAAACTGGAATCAAAGCTCTT 152
| |||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 130 TTGTAG-TCTACAAAGGAAATGGTGTTAAGGGTTTATCAGAAACAGGAATCAAAGCTCTT 188
Query 153 CCAGATCAATACATCCAGCCACTTGAAGAACGACTCATCAACAAATTCGTCAACGAAACA 212
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CCAGAACAATACATTCAGCCACTTGAAGAACGACTCATCAACAAATTCGTCAACGAAACA 248
Query 213 GATGAAGCCATTCCGGTGATCGATATGTCGAGCCCTGACGAGAACAGAGTCGCTGAAGCT 272
|||||||||||||| || ||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 249 GATGAAGCCATTCCAGTTATCGATATGTCGAACCCTGATGAGGACAGAGTCGCTGAAGCT 308
Query 273 GTCTGTGATGCTGCTGAGAAATGGGGTTTCTTTCAAGTTATCAATCATGGAGTCCCTTTG 332
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 309 GTTTGTGATGCTGCTGAGAAATGGGGGTTCTTTCAAGTGATCAATCATGGAGTTCCTTTG 368
Query 333 GAAGTTCTTGACGACGTGAAGGCTGCGACTCAC-AGATTCTTCAATCTCCCTGTTGAAGA 391
||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 369 GAAGTTCTTGATGACGTCAAGGCTGCGACTCACAAG-TTCTTCAATCTCCCTGTTGAAGA 427
Query 392 GAAGTGCAAATTCACTAAAGAGAATTCTCTGTCGACGAATGTTAGGTTTGGGACGAGTTT 451
|||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 428 GAAGCGCAAGTTCACTAAAGAGAATTCGCTGTCGACGACTGTTAGGTTTGGGACGAGTTT 487
Query 452 TAGTCCCCTTGCAGAGAAATCTCTCGAGTGGAAAGATTATCTCAGTCTCTTCTTTGTCTC 511
|||||| ||||||||| || | || |||||||||||||||||||| ||||||||||||||
Sbjct 488 TAGTCCTCTTGCAGAGCAAGCGCTTGAGTGGAAAGATTATCTCAGCCTCTTCTTTGTCTC 547
Query 512 TGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACATTAGAGTACAT 571
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 TGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGTTAGAGTACAT 607
Query 572 GAACAAGTCAAAGAAGATGGTGAGGAAGCTTCTAGAGTATTTGGGGAAGAATCTCAATGT 631
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 608 TAACAAGTCAAAGAAGATGGTGAGGAGGCTTCTAGAGTATTTGGGAAAGAATCTCAATGT 667
Query 632 TAAAGAGCTCGACGAGACGAAAGAATCACTCTTTATGGGTTCGATTCGAGTCAACCTCAA 691
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 668 TAAAGAGCTTGACGAGACGAAAGAATCACTCTTTATGGGCTCGATTCGAGTCAACCTTAA 727
Query 692 CTACTATCCGATCTGCCCTAACCCGGACCTAACCGTCGGTGTTGGTCGCCACTCAGACGT 751
|||||| || ||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 728 CTACTACCCCATCTGCCCTAATCCGGACCTAACAGTTGGTGTTGGTCGCCACTCAGACGT 787
Query 752 CTCTTCTCTCACTATTCTCTTACAAGATCAGATCGGCGGTCTACACGTGCGTTCTCTGGC 811
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 788 CTCTTCTCTCACCATTCTCTTACAAGACCAGATCGGTGGTCTACACGTGCGTTCTCTGGC 847
Query 812 GTCAGGGAACTGGGTTCACGTGCCACCGGTTCCCGGATCTTTTGTGATCAACATCGGAGA 871
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 848 TTCAGGGAACTGGGTTCACGTGCCTCCGGTTGCTGGATCTTTTGTGATCAACATCGGAGA 907
Query 872 TGCGATGCAGATCTTGAGCAATGGTCGGTACAAGAGCGTGGAGCATCGTGTCTTAGCCAA 931
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 908 TGCGATGCAGATCATGAGCAATGGTCTGTACAAGAGCGTGGAGCATCGTGTCTTAGCCAA 967
Query 932 TGGCAACAATAACAGAATCTCTGTTCCTATCTTTGTGAATCCAAAACCAGAGTCAGTGAT 991
||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 968 TGGTTACAATAATAGAATCTCTGTTCCTATCTTTGTGAACCCAAAACCAGAGTCAGTTAT 1027
Query 992 TGGTCCTCTACCTGAGGTGATTGCAAATGGAGAGGAACCGATTTACAGAGACGTCCTGTA 1051
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 TGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAGACGTCCTGTA 1087
Query 1052 CTCTGATTACGTCAGGTATTTCTTCAGGAAGGCACACGACGGAAAGAAAACCGTCGATTA 1111
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1088 CTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAACCGTCGATTA 1147
Query 1112 CGCCAAGATCTGATCACAA-TCGACCTCGAGGAGTTCGATTTCTTTTTGTTTCAT-G-TT 1168
|||||||||||||||| || | ||||| ||||||||||||||||||| ||| | | ||
Sbjct 1148 CGCCAAGATCTGATCATAAATA-ACCTCAAGGAGTTCGATTTCTTTTTTTTTTTTTGGTT 1206
Query 1169 T-GT-----GTT-GTGT-GTG--AGTGAATaaaa-aa-aGA-----------T--GT--- 1200
| || ||| |||| ||| ||||||||||| || ||| | ||
Sbjct 1207 TTGTTTCCTGTTTGTGTTGTGTTAGTGAATAAAAGAAGAGAGAAGAGAGACATATGTGAT 1266
Query 1201 --CTTCTTGAACCAGTTTCTCTGTTCAGAATTGTGTTGTA-AAATTTACTATCATTGATC 1257
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1267 GTCTTCTTGAACCAGTTTCTCTGTTCAGAATTGTGTTGTATAAATTG-CTATCATTGATC 1325
Query 1258 AATACAGTTTTTCTTTTATCAGACT 1282
|||||||||| ||||||||||||||
Sbjct 1326 AATACAGTTTCTCTTTTATCAGACT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5