BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478924
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-li... 2198 0.0
AT1G53280.1 | Symbols: | Class I glutamine amidotransferase-li... 1068 0.0
> AT3G14990.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr3:5047400-5049877 FORWARD LENGTH=1545
Length=1545
Score = 2198 bits (1190), Expect = 0.0
Identities = 1431/1540 (93%), Gaps = 45/1540 (3%)
Strand=Plus/Plus
Query 1 TGAGTCTTTCCCACTATTTTAACCCCATTAGTGACACTCTTTTCTTCTCCACTACACTCC 60
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2 TGAGTCTTTCCTACTATTTTAACCCCATTAGTGACACTCCTTTCTTCTCCACTACACTCC 61
Query 61 ATTTCTCTTTCTTC-T---T-G---A-----TCTCTAATCTCCGCAACTATGGCTACATC 107
|||||||||||||| | | | | |||||||||||||||||||||||| |||
Sbjct 62 ATTTCTCTTTCTTCTTGACTCGACCATCGTTTCTCTAATCTCCGCAACTATGGCTTCATT 121
Query 108 TACGAAGACGGTTTTGATCCCTATTGCACACGGTACGGAGCCTTTAGAAGCGGTGGCGAT 167
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 122 TACGAAAACGGTTTTGATCCCTATTGCGCACGGTACGGAGCCTCTAGAAGCGGTGGCGAT 181
Query 168 GATCACCGTGTTGCGTCGAGGTGGTGCTGACGTGACGGTGGCTTCCGTCGAGACTCAGGT 227
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 182 GATTACCGTGTTGCGTCGAGGTGGTGCTGACGTGACGGTGGCGTCTGTTGAGACTCAGGT 241
Query 228 TGGCGTTGATGCTTGTCATGGCATCAAGATGGTCGCTGATACTCTTCTCTCTGATATTAC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGGCGTTGATGCTTGTCATGGCATCAAGATGGTCGCTGATACTCTTCTCTCTGATATTAC 301
Query 288 CGACTCTGTTTTCGACCTTATTGTGCTCCCCGGAGGGCTTCCCGGTGGCGAGACTCTTAA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGACTCTGTTTTCGACCTTATTGTGCTCCCCGGAGGGCTTCCCGGTGGCGAGACTCTTAA 361
Query 348 AAACTGTAAACCTTTAGAGAACATGGTTAAGAAACAAGACTCTGATGGACGACTTAACGC 407
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 362 AAACTGTAAATCTTTAGAGAACATGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGC 421
Query 408 AGCTATCTGTTGTGCTCCTGCGTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAAAA 467
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 422 AGCTATATGTTGTGCTCCTGCCTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAA 481
Query 468 AGCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCAGCTACTTGTGCCACTGCTGTTGA 527
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 482 AGCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGA 541
Query 528 GTCAAGAGTGCAAATAGATGGAAGAATAGTGACTAGTCGTGGACCAGGAACCACCATTGA 587
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 542 GTCAAGAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGA 601
Query 588 ATTCTCCGTCACGCTTATAGAGCAGTTGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAG 647
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 602 ATTCTCCATCACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAG 661
Query 648 TATCTTGCTGCTTCGTCCCAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAAC 707
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TATCTTGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAAC 721
Query 708 GACCTGGTCATTCGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGA 767
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AAACTGGTCATTTGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGA 781
Query 768 AATTGAAGCCATTGCGCTTGTAGATATCCTGAGACGGGCAAAAGCAAACGTAGTGATTGC 827
||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 782 AATTGAAGCTATAGCGCTTGTAGATATCCTGAGGCGGGCAAAAGCAAATGTAGTGATTGC 841
Query 828 TGCAGTTGGTAACAGTTTGGAAGTTGTAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGT 887
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 842 TGCAGTTGGTAACAGTTTGGAAGTTGAAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGT 901
Query 888 GCTTCTTGATGAAGTTGCAGAGAAGTCGTTCGATCTGATTGTGTTACCTGGCGGTCTTAA 947
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 TCTTCTTGATGAGGTTGCAGAGAAGTCGTTTGATCTGATTGTGTTACCTGGCGGTCTTAA 961
Query 948 CGGTGCTCCAAGATTCGCAAGCTGCGAGAAACTGGTGAATATGTTAAAGAAGCAGGCAGA 1007
|||||||| ||||||||||||||||||||| || || |||||||||| ||| ||||||||
Sbjct 962 CGGTGCTCAAAGATTCGCAAGCTGCGAGAAGCTAGTTAATATGTTAAGGAAACAGGCAGA 1021
Query 1008 AGCAAACAAACCATATGGAGGAATCTGCGCATCGCCTGCGTACGTCTTCGAGCCTAATGG 1067
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1022 AGCAAACAAACCATATGGAGGAATCTGCGCATCGCCTGCTTACGTCTTCGAGCCTAATGG 1081
Query 1068 TTTACTCAAGGGTAAGAAGGCTACTACTCACCCAGTGGTGAGCGACAAACTTTCGGACAA 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTTACTCAAGGGTAAGAAGGCTACTACTCACCCAGTGGTGAGCGACAAACTTTCGGACAA 1141
Query 1128 GAGTCACATTGAGCATAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGG 1187
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GAGTCACATTGAGCACAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGG 1201
Query 1188 GACTGCAATGGAGTTTTCACTTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACT 1247
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1202 GACTGCAATGGAGTTTTCACTTGCCATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCTCT 1261
Query 1248 TCAGCTCGCAAAGGCCACACTTGTGTGATTTCCGAACAATGAAT-TATGAGAGTGACTTG 1306
|||||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1262 TCAGCTCGGAAAGGCAACACTTGTGTGATTTCA-AACAATGAAAGTATGAGAGTGGCTTG 1320
Query 1307 AATAAAA-GAAGGCTTTGCCTTTTAGTTATCTCTC---AT-A-TAA---C--A-T--ATG 1352
||||||| ||||||||||||||||||||||||||| || | ||| | | | |||
Sbjct 1321 AATAAAAAGAAGGCTTTGCCTTTTAGTTATCTCTCTCCATTAGTAATTACTTACTTTATG 1380
Query 1353 A-----G-CATTTGGG-T-G----AGTGGTTGCTGTGAAACTTTATGCCTTTATAAATGA 1400
| | ||| || | | | |||| ||| |||| ||||||||||||||||||||||
Sbjct 1381 ATATATGACATATGAGCTTGGCTTAGTGATTGGTGTGTAACTTTATGCCTTTATAAATGA 1440
Query 1401 ATAAACGAGATTTTTCTATGTATGTGGCCGATATTTTCTTTAACCCTCTGCAAGAG-TAA 1459
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||
Sbjct 1441 ATAAACGAGATTTTTCTATGTATGTTGCCGATATTTTCTTTAAACCTCTGCAAGAGCTA- 1499
Query 1460 GAGGGTTTTCTTGAGGAAGATATTTTATTTTATGGAGAAA 1499
|||||| | || ||| || | ||| ||||||||||||||
Sbjct 1500 GAGGGTGTGCTGGAGAAAAAAATT--ATTTTATGGAGAAA 1537
> AT1G53280.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr1:19864770-19867389 REVERSE LENGTH=1537
Length=1537
Score = 1068 bits (578), Expect = 0.0
Identities = 1010/1215 (83%), Gaps = 44/1215 (4%)
Strand=Plus/Plus
Query 79 TCTCTAATCTCCGCAACTATGGCTACATCTACGAAGACGGTTTTGATCCCTATTGCACAC 138
||||| ||||| ||||||||| || ||||||| |||| ||||||||| ||| |||| ||
Sbjct 173 TCTCT-ATCTCTGCAACTATGTCTTCATCTACTAAGAAGGTTTTGATTCCTGTTGCTCAT 231
Query 139 GGTACGGAGCC-TTTAGAAGCGGTGGCGATGATC-ACCGTGTTGCGTCGAGGTGGTGCTG 196
||||||||||| ||| |||||||||| |||||| | ||| | || ||||| || || |
Sbjct 232 GGTACGGAGCCGTTT-GAAGCGGTGGTTATGATCGA-TGTGCTACGGCGAGGCGGAGCGG 289
Query 197 ACGTGACGGTGGCTTCCGTCGAGACTCAGGTTGGCGTTGATGCTTGTCATGGCATCAAGA 256
| || |||||||||||||| |||| |||||| |||||||||||||| ||||| ||||| |
Sbjct 290 ATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGATGCTTGCCATGGAATCAAAA 349
Query 257 TGGTCGCTGATACTCTTCTCTCTGATATTACCGACTCTGTTTTCGACCTTATTGTGCTCC 316
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 350 TGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGTTTTCGACCTTATTATGCTCC 409
Query 317 CCGGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAACCTTTAGAGAACATGGTTA 376
| ||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct 410 CTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAAACCTTTAGAGAAGATGGTGA 469
Query 377 AGAAACAAGACTCTGATGGACGACTTAACGCAGCTATCTGTTGTGCTCCTGCGTTGGC-T 435
|||| |||||| ||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 470 AGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTGTTGTGCGCCGGCGTTGGCGT 529
Query 436 CTTGGTACTTGGGGTCTACTAGAAGGCAAAAAAGCAACGGGTTACCCTGTTTTTATGGAG 495
||||||||||||| |||||||| || |||||||| || ||||||| ||||||||||||
Sbjct 530 -TTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATGTTACCCGGTTTTTATGGAG 588
Query 496 AAACTTGCAGCTACTTGTGCCACTGCTGTTGAGTCAAGAGTGCAAATAGATGG-AAGAAT 554
||||| || ||| | |||| || |||||||||||||||||| |||| ||||| |||| |
Sbjct 589 AAACTAGCGGCT--T-GTGCGACAGCTGTTGAGTCAAGAGTGGAAATTGATGGGAAGA-T 644
Query 555 AGTGACTAGTCGTGGACCAGGAACCACCATTGAATTCTCCGTCACGCTTATAGAGCAG-T 613
|||||| ||| | || || ||||| ||||| |||||||| ||||||||| | ||||| |
Sbjct 645 AGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCACGCTTGTGGAGCAACT 704
Query 614 TGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAGTATCTTGCTGCTTCGTCCCAACCCTG 673
| || |||||||||||||||| |||||||||| | |||| || | |||||||||||||
Sbjct 705 TCTT-GGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGATGCGTCCCAACCCTG 763
Query 674 GTGAGGAGTTTACTTTTACTGAGCTTAACCAAA-CGACCTGGTCATTCGAAGATACACCA 732
|||| |||| |||| ||||||||||||||||| | | |||||||||||| | ||| |||
Sbjct 764 GTGATGAGTATACTATTACTGAGCTTAACCAAGTC-AGCTGGTCATTCGAGGGTACCCCA 822
Query 733 CAGATTCTCGTACCCATTGCAGA-GGAGTCAGAGGAAATTGAAGCCATTGCGCTTGTAGA 791
|||||||| |||||||||||||| || || |||||||| ||||| |||| | | ||
Sbjct 823 CAGATTCTTGTACCCATTGCAGATGGC-TCGGAGGAAATGGAAGCTGTTGCTATCATTGA 881
Query 792 TATCCTGA-GACGGGCAAAAGCAAACGTAGT-GATTGCTGCAG-TTGGTAACAGTTTGGA 848
| |||||| | |||||||||||||| || || | | ||||| | ||||||||||||||||
Sbjct 882 TGTCCTGAAG-CGGGCAAAAGCAAATGTTGTCG-TAGCTGC-GCTTGGTAACAGTTTGGA 938
Query 849 AGTTGTAGGATCTCGCAAAG-CTAAGCTAGTAGCAGAAGTGCTTCTTGATGAAGTTGCAG 907
||| |||| |||||| |||| | ||||| || ||||| |||||||| || || | || |
Sbjct 939 AGTGGTAGCATCTCGGAAAGTC-AAGCTGGTGGCAGATGTGCTTCTCGACGAGGCTGAAA 997
Query 908 AGAAGTCGTTCGATCTGATTGTGTTACCTGGCGGTCTTAACGGTGCTCCAAG-ATTCGCA 966
|||| |||| ||||||||||||||| ||||| ||||| ||||||| ||| ||| |||
Sbjct 998 AGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTG-AAGCATTTGCA 1056
Query 967 AGCTGCG-AGAAACTGGTGAATATGTTAAAGAAGCAGGCAGAAGCAAACAAACCATATGG 1025
|| | || |||| || ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1057 AGTT-CGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACCATATGG 1115
Query 1026 AGGAATCTGCGCATCGCCTGCGTAC-G-TCTTCGAGCCTA-ATGGTTTACTCAAGGGTAA 1082
|| ||| || || || ||||| | | | | || ||||| | |||||||||||||||||||
Sbjct 1116 AGCAATTTGTGCCTCTCCTGC-T-CTGGTGTTTGAGCC-ACATGGTTTACTCAAGGGTAA 1172
Query 1083 GAAGGCTACTA-C-TCACCCAGTGGTGAGC-GACAAACTTTCGGACAAGAGTCACATTGA 1139
|||||| || | | | || || || || | |||||| ||||| |||||||||| ||
Sbjct 1173 GAAGGCAAC-AGCGTTTCC-AGCAATGTGCAG-CAAACTGACGGACCAGAGTCACATCGA 1229
Query 1140 GCATAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGAC-TGCAATGG 1198
|||| ||||| |||| || || ||| ||||||| ||||| | |||||| || | || |||
Sbjct 1230 GCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCT-CATTGG 1288
Query 1199 AGTTTTCACTTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACTTCAGCTCGCAA 1258
||||| ||||||| ||||| || |||||||||||||| ||||||| |||||||||| |||
Sbjct 1289 AGTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAA 1348
Query 1259 AGGCCACACTTGTGT 1273
|||| ||||||||||
Sbjct 1349 AGGCAACACTTGTGT 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5