BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478926
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15000.1 | Symbols: | cobalt ion binding | chr3:5050257-505... 2218 0.0
> AT3G15000.1 | Symbols: | cobalt ion binding | chr3:5050257-5052432
FORWARD LENGTH=1563
Length=1563
Score = 2218 bits (1201), Expect = 0.0
Identities = 1400/1495 (94%), Gaps = 18/1495 (1%)
Strand=Plus/Plus
Query 1 TTTACACACTCTCGGCTAGGGTTTTGTCTGCGAAACCCAATCTAGAGCTTCCATGGCGAC 60
||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 13 TTTTCACACTCTCTCCTAGGGTTTTATCTGCGAAGCCCAATCTAGAGCTTCCATGGCGAC 72
Query 61 GCATACCATTTCTCGCTCCATTCTTTGCCGACCGGCGAAATCTCTTTCCCTTCTGTTCAC 120
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 73 GCATACCATTTCTCGATCCATTCTTTGCCGACCGGCGAAATCTCTTTCGTTTCTGTTCAC 132
Query 121 GCGATCTTTTGCTTCATCTGCTCCTCTCGTCAAAAT-TCCGGCGTCGTCTCTGCTCAGCC 179
|||||| |||||||||||||||||||||| | |||| ||||||||| |||||||||||||
Sbjct 133 GCGATCCTTTGCTTCATCTGCTCCTCTCG-CCAAATCTCCGGCGTCTTCTCTGCTCAGCC 191
Query 180 GTTCCCGTCCTCTCGTCGCCGCTTTTTCCTCCGTTTTCCGTGGCGGCCTTGTGTCTGTTA 239
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 192 GGTCCCGTCCTCTGGTCGCCGCTTTTTCCTCCGTTTTCCGTGGCGGCCTTGTGTCTGTCA 251
Query 240 AAGGTCTCTCAACGCAGGCTACGTCGTCTTCTCTGAACGATCCGAACCCCAACTGGTCGA 299
|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 252 AAGGTCTCTCGACGCAGGCTACATCGTCTTCTCTGAACGACCCGAATCCCAACTGGTCGA 311
Query 300 ACAGGCCACCTAAGGAGACGATCCTGCTCGATGGATGCGATTTCGAGCACTGGCTTGTCG 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 312 ACAGGCCACCTAAGGAGACGATCCTGCTCGATGGTTGCGATTTCGAGCACTGGCTTGTCG 371
Query 360 TCGTGAATCCACCGGAGGGTGATCCTACTAGAGACGATATCATTGATAGTTACATCAAAA 419
||||| | ||||| ||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 372 TCGTGGAGCCACCTCAGGGTGAGCCTACTAGAGATGAAATCATTGATAGCTACATCAAAA 431
Query 420 CCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGGATGAAGATCTACTCGGTTTCAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGGATGAAGATCTACTCGGTTTCAA 491
Query 480 CTAGGTGCTACTATGCTTTTGGAGCCCTTGTGTCAGAAGATCTTTCTCACAAGTTAAAAG 539
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 492 CTAGGTGCTACTATGCTTTTGGGGCACTTGTGTCAGAAGATCTTTCTCACAAGTTAAAAG 551
Query 540 AGTTGCCAAATGTGCGCTGGGTTCTTCCTGACTCTTACCTGGATGTGAGGAACAAAGACT 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGTTGTCAAATGTGCGCTGGGTTCTTCCTGACTCTTACCTGGATGTGAGGAACAAAGACT 611
Query 600 ACGGAGGGGAACCTTTCATCGATGGCAAGGCTGTTCCTTATGATCCCAAGTACCATGAGG 659
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 612 ATGGAGGGGAACCTTTCATCGATGGGAAGGCTGTTCCTTATGATCCTAAGTACCACGAGG 671
Query 660 AGTGGATAAGGAACAATGCTAGAGCAAATGAAAGAAACAGACGCAATGATCGTCCTCGCA 719
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 672 AGTGGATAAGGAACAATGCTAGAGCAAATGAAAGGAACAGACGCAATGACCGTCCTCGCA 731
Query 720 ACTTTGATAGAACCAGAAACTTTGAGAGGAGAAGAGAGAACATGGCAGGAGGCcctcctc 779
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 ACAATGATAGAAGCAGAAACTTTGAGAGGAGAAGAGAGAACATGGCAGGAGGCCCTCCTC 791
Query 780 ctcaacgtcctccaatgggaggtcctcctcctcctccgcacatgggtggctctgctcctc 839
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 792 CTCAACGTCCTCCCATGGGAGGCCCTCCTCCTCCTCCGCACATCGGTGGCTCTGCACCTC 851
Query 840 ctccgcctcACATGGGTGGCTCTGCACCTCCTCCACCTCACATGGGGCAGAACTACGGGG 899
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 852 CTCCGCCTCATATGGGTGGCTCTGCACCTCCTCCACCTCACATGGGGCAGAACTATGG-- 909
Query 900 GACCACCACCACCAAACAACATGGGAGGACAAAGGCCGCCACCTAACT-ATGGAGGACCA 958
||||||||||||||||||||||||||||| ||||| ||||| | || |||||| ||||
Sbjct 910 -ACCACCACCACCAAACAACATGGGAGGACCAAGGCATCCACC-ACCTTATGGAGCACCA 967
Query 959 CCGCAAAACAACATGGGAGGACAGAGGCCACCACCA-AACTATGGAGGAGCACCACCTCC 1017
|||||||||||||||||||||| ||||||||| | | |||||||||||| ||||||||||
Sbjct 968 CCGCAAAACAACATGGGAGGACCGAGGCCACCTC-AGAACTATGGAGGAACACCACCTCC 1026
Query 1018 GAACTACGGAGGAGCACCACCAGCAAACAACATGggaggaggaccaccacctaactatgg 1077
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1027 CAACTATGGAGGAGCACCACCAGCAAACAACATGGGAGGAGCACCACCACCAAACTATGG 1086
Query 1078 aggagcaccaccacca-aactatggaggaggaccaccaccT-AACTACGGAGGAGCACCC 1135
||||| ||||||||| || ||||||| || |||||||||| || |||||||||||||||
Sbjct 1087 AGGAGGACCACCACCTCAA-TATGGAGCAGTACCACCACCTCAA-TACGGAGGAGCACCC 1144
Query 1136 CCACAGAACAACAACTACCAGCAGCAGAGTGGTGGAATGCAGCAGCCACAGTACCAGAAC 1195
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1145 CCACAGAACAACAACTACCAGCAGCAGGGTAGTGGAATGCAGCAGCCACAGTACCAGAAC 1204
Query 1196 AATTACCCACCTAACCGGGATGGCAGCGGGAACCCCTACCAGGGTTAAAGTAGTTGAAGC 1255
|| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1205 AACTACCCACCTAACCGGGATGGCAGTGGCAACCCCTACCAGGGTTAAAGCAGTTGAAGC 1264
Query 1256 AGTCGTGGGTTTCCTTTTCAATCATGCATTCTGGGCTGTGTATAGATAATTTGAGGAAGA 1315
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AGTCGTGGGTTTCCTTTTTAATCATGCATTCTGGGCTGTGTATAGATAATTTGAGGAAGA 1324
Query 1316 GAGAGTGCAATAGCAAGACTTAAAAACTCCTTTTTATCTCGAGTGTTTATCAGTCTGGTA 1375
||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 1325 GAGAGTGCAGTAGCAAGACTTTAAAACTCCTTTT-ATCTCGAGTGTTTATCAGTCTGGGA 1383
Query 1376 TTATGTGAGAGAGAGAATAGCCTGAGTAACTCTGGCATGGTTAGAACTTTTTA-TGCTTG 1434
|||||||||||||| | |||||| ||| ||| ||||||||||||||||||| | | ||||
Sbjct 1384 TTATGTGAGAGAGA-A-TAGCCTAAGTTACTGTGGCATGGTTAGAACTTTTCACT-CTTG 1440
Query 1435 CGTTTCGTTTTATTAGTTTATATCCTAAATCGATCTCAAGTTCTTCCTTGTGATG 1489
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CGTTTCTTTTTAGTAGTTTATATCCTAAATCGATCTCAAGTTCTTCCTTGTGATG 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5