BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478927
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2008 0.0
> AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052731-5054918 FORWARD LENGTH=1645
Length=1645
Score = 2008 bits (1087), Expect = 0.0
Identities = 1234/1304 (95%), Gaps = 14/1304 (1%)
Strand=Plus/Plus
Query 1 TCGCTTTCTCTACGGCTGGACT---AGGATTAGGGATTTTCCAGTGAAAGGAGA-AACTC 56
|||||||||||||||||||||| |||||||||||||| || |||||| || | |||||
Sbjct 37 TCGCTTTCTCTACGGCTGGACTAGAAGGATTAGGGATTTACCGGTGAAA-GA-ATAACTC 94
Query 57 TAGAGTTACATCTACAATCATGGATATGATGAAGAAGCGAAAGCTCGATGAGAACGGTGG 116
|||| || |||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 95 CAGAGATAAATCTGTAACCATGGATATGATGAAGAAGCGTAAGCTCGATGAGAACGGT-A 153
Query 117 A-GGACTCATTACCAACGGTGGCGGAATCATTGGTCCTACTCGATTGACGCCGCAAGACG 175
| ||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 154 ACGGACTCAATACCAACGGTGGCGGAACCATTGGTCCAACTCGATTGTCGCCGCAAGACG 213
Query 176 CGAGGAAGATTATCGAGCGATTCACCACTGATCAGCTGCTCGACTTATTGCAAGAGGCTA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CGAGGAAGATTATCGAGCGATTCACCACTGATCAGCTGCTCGACTTATTGCAAGAGGCTA 273
Query 236 TCGTACGCCATCCCGACGTGCTTGACTCTGTCCGATCAACCGCCGACTCTGATATCTCTC 295
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
Sbjct 274 TCGTACGCCATCCCGACGTGCTTGAATCTGTCCGATTAACCGCCGACTCTGATATCTCGC 333
Query 296 AGCGGAAGCTATTCATCCGTGGTCTCGCGGCGGATACTACCACGGAAGGTCTTCGTTCGC 355
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 334 AGCGGAAGCTATTCATCCGTGGTCTCGCGGCGGATACTACTACGGAAGGTCTCCGTTCGC 393
Query 356 TTTTTTCCAATTACGGAGATCTCGAAGAAGCTATTGTGATCCTTGACAAGGTCACTGGGA 415
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 394 TTTTTTCCAGTTACGGAGATCTAGAAGAAGCTATTGTGATCCTTGACAAGGTCACTGGGA 453
Query 416 AATCCAAAGGGTATGGTTTCGTCACTTTTATGCACGTTGATGGAGCTCTACTAGCTTTGA 475
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 454 AATCGAAAGGGTATGGTTTCGTCACTTTTATGCACGTTGATGGAGCTTTACTAGCTCTGA 513
Query 476 AAGAACCATCTAAGAAAATTGATGGGCGTGTCACAGTAACGCAGCTCGCGGCATCTGGAA 535
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 514 AAGAACCATCTAAGAAAATTGATGGGCGTGTTACAGTAACGCAGCTCGCGGCATCTGGAA 573
Query 536 ATCAAGGTACGGGCTCCCAGATTGCAGATATATCAATGAGGAAGATCTATGTGGCGAATG 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 ATCAAGGTACGGGTTCCCAGATTGCAGATATATCAATGAGGAAGATCTATGTGGCGAATG 633
Query 596 TTCCGTTTGATATGCCGGCGGATAGGCTATTGAATCACTTTATGGCATATGGAGATGTTG 655
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 634 TTCCTTTTGATATGCCGGCGGATAGGCTATTGAATCACTTTATGGCTTATGGAGATGTTG 693
Query 656 AGGAAGGTCCTTTGGGCTTTGATAAGGTTACGGGTAAATCAAGAGGCTTTGCATTGTTTG 715
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 694 AGGAAGGTCCTTTGGGTTTTGATAAGGTTACTGGTAAATCTAGAGGCTTTGCATTGTTTG 753
Query 716 TGTACAAGACAGCCGAAGGTGCGCAGACTGCTCTTGCTGATCCGGTGAAGGTGATTGATG 775
| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 754 TCTACAAGACAGCGGAAGGTGCGCAGGCTGCTCTTGCTGATCCGGTGAAGGTGATTGATG 813
Query 776 GAAAACATTTGAATTGTAAGTTGGCTGTTGATGGTAAGAAAGGAGGAGGGAAGCCTGGAA 835
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 814 GAAAACATTTGAATTGTAAGTTGGCTGTTGATGGTAAGAAAGGAGG-G--AAGCCTGGAA 870
Query 836 TGCCGCAAGCTCAGGATGGTGGTTCTGGTCATGGACACGTTCATGGTGATGGAATGGGAA 895
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 871 TGCCACAAGCTCAAGATGGTGGTTCTGGTCATGGACACGTTCATGGTGAGGGAATGGGAA 930
Query 896 TGGTGCGTCCTGCAGGACCTTATAGTGCAGCTGGTGGCATGAGTGCTTATGGTGGGTACT 955
||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 931 TGGTGCGTCCTGCAGGACCTTATGGTGCAGCTGGTGGTATCAGTGCTTATGGTGGGTACT 990
Query 956 CGGGAGGACCACCACCGCATCACATGAATTCCACACCCTCTTCAATGGGTGTTGGTACTG 1015
| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 991 CTGGAGGACCACCAGCGCATCACATGAATTCCACACACTCCTCAATGGGTGTTGGTTCTG 1050
Query 1016 GTGGGTATGGTGGACACTATGGTGGATATGGAGGTCCAggtggtactggcggctacggtg 1075
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 CTGGGTATGGTGGACACTATGGTGGATATGGAGGTCCAGGTGGTACTGGCGTCTACGGTG 1110
Query 1076 gacttggcggtgggtatggtgggcctggtggtggaagtgggcCGTATAGAATGCCACCAA 1135
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1111 GACTTGGCGGTGGGTATGGTGGGCCTGGTACTGGAAGTGGGCAGTATAGAATGCCACCAA 1170
Query 1136 GTTCGATGCCTGGTGCTGGT--T-ATCCGGAGAGTGGGCATTATGGTCTTTCATCATCTG 1192
||||||||||||||| |||| | |||| |||||||||||||| ||||||||||||||||
Sbjct 1171 GTTCGATGCCTGGTGGTGGTGGTTATCCCGAGAGTGGGCATTACGGTCTTTCATCATCTG 1230
Query 1193 CTGGGTATCCTGGACAGCATCATCAGGCTGTTGGAACATCCCCTGTGCCAAGAGTTCCTC 1252
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1231 CTGGGTATCCTGGACAGCATCATCAGGCTGTTGGAACGTCCCCTGTGCCAAGAGTTCCTC 1290
Query 1253 ATGGAGGAATGTACCCAAACGGTCCACCAAACTACTGAAAAGGT 1296
|||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1291 ATGGCGGAATGTACCCCAACGGTCCACCAAACTACTGAAAAGGT 1334
Score = 435 bits (235), Expect = 1e-120
Identities = 261/273 (96%), Gaps = 3/273 (1%)
Strand=Plus/Plus
Query 1830 AGGTTTGTGACAGCATATTGGGCGAAGATGCTTTTTTGTGCTTAGTGGTGATTGCCTGAT 1889
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 1331 AGGTTTGTGACAGCATATTGGGTGAAGATGC-TTTTTGTGCTTAGTGGTGATTACCTGAT 1389
Query 1890 TGCAGCTCTTTAATCTCTGGAATGATGAATGTATAGCTGCTTTGACCTCTCTGCACTTGA 1949
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1390 TGCAGCTCTTTAATCTCTGGAATGATGAATGTATAGCTGCTTTGACCTATCTGCACTTGA 1449
Query 1950 CCTGAATGTGCTTTGGTTGCTATAATGAATGATTAGAATAGGATATATTTATGTACTTTT 2009
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1450 CCTGAATGTGCTTTGGTTTCTATAATGAATGATTAGACTAGGATATATTTATGTACTTTT 1509
Query 2010 AA-TCATAGAGATACTCGGCAGATGAGTTTTGTTGGTCAGATTAGTGAGGCTTCAATAAT 2068
|| | ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1510 AAAT-ATAGACATACTCGGCAAATGAGTTTTGTTGGTCAGATTAGTGAGTCTTCAATAAT 1568
Query 2069 ATGTTGTATTTTCTCCTACGTTGTTTTCTGGTT 2101
||||||||||||||||||| |||||||||||||
Sbjct 1569 ATGTTGTATTTTCTCCTACATTGTTTTCTGGTT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104166130875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5