BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478929
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15020.1 | Symbols: mMDH2 | Lactate/malate dehydrogenase fam... 1799 0.0
AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase fam... 1064 0.0
> AT3G15020.1 | Symbols: mMDH2 | Lactate/malate dehydrogenase family
protein | chr3:5056068-5058248 FORWARD LENGTH=1404
Length=1404
Score = 1799 bits (974), Expect = 0.0
Identities = 1122/1191 (94%), Gaps = 19/1191 (2%)
Strand=Plus/Plus
Query 1 TTTCCCAACCAAAAATGTTCCGATCAATGCTTGTTCGATCCGCTTCCCCAGTGAAGCAGG 60
||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 58 TTTCCCAACGAAAAATGTTCCGATCAATGATTGTTCGATCTGCTTCCCCAGTGAAGCAGG 117
Query 61 GGCTTCTCCGCAGAGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GTCTTCTCCGCAGAGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCG 177
Query 121 GTGCCGCCGGTGGAATCGGCCAGCCACTTtctctcctcatgaagcttaaccctctcgtct 180
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 GTGCCGCCGGTGGGATCGGCCAGCCACTTTCTCTTCTCATGAAGCTTAACCCTCTCGTCT 237
Query 181 cctctctctccctctATGATATCGCCAACACTCCCGGCGTTGCCGCTGACGTCGGCCACA 240
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 238 CTTCTCTCTCCCTCTATGATATCGCCAACACTCCCGGCGTTGCTGCTGACGTCGGTCACA 297
Query 241 TCAACACCCGATCTCAGGTATCTGGATACATGGGTGATGATAATTTGGGGAAAGCTCTAG 300
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 298 TCAACACCCGATCTCAGGTTTCTGGGTACATGGGTGATGATGATTTGGGGAAAGCTCTAG 357
Query 301 AAGGAGCTGACCTCGTCATTATTCCAGCTGGTGTCCCGAGGAAGCCTGGCATGACCCGTG 360
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 AAGGCGCTGACCTCGTCATTATTCCAGCTGGTGTCCCAAGGAAGCCTGGCATGACCCGTG 417
Query 361 ATGATCTTTTCAACATTAATGCTGGCATTGTCAAGAACCTTAGCATCGCCATCGCCAAGT 420
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 ATGATCTTTTCAACATCAATGCTGGCATTGTCAAGAACCTCAGCATCGCCATCGCCAAGT 477
Query 421 ACTGCCCTCAAGCGCTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCTATTG 480
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 ATTGCCCACAAGCACTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCAATTG 537
Query 481 CAGCTGAGATTTTTAAGAAGGCTGGTACCTACGATGAGAAGAAATTGTTTGGTGTTACCA 540
||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct 538 CAGCTGAGATTTTTAAGAAGGCTGGTACCTATGATGAGAAGAAATTATTCGGTGTCACCA 597
Query 541 CTCTTGACGTTGTCAGGGCCAAGACTTTCTATGCGGGAAAATCAAATCTCAATGTTGCAG 600
||||||| ||||||||||| | |||||||||||| |||||||| || ||||||||||||
Sbjct 598 CTCTTGATGTTGTCAGGGCTAGGACTTTCTATGCTGGAAAATCGGATGTCAATGTTGCAG 657
Query 601 AGGTTAATGTTCCAGTTGTTGGTGGTCATGCTGGTATTACGATTCTTCCTCTCTTTTCTC 660
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 658 AGGTTAATGTTCCAGTTGTTGGTGGTCATGCTGGCATCACGATTCTTCCTCTCTTTTCTC 717
Query 661 AGGCTAGCCCTCAAGCCAACTTGTCGGATGATTTAATCAAGGCCCTCACAAAGCGTACCC 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 AGGCTAGCCCTCAAGCCAACTTGTCGGATGATTTAATCAGGGCCCTCACAAAGCGTACCC 777
Query 721 AGGACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGGACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAA 837
Query 781 TGGCCTATGCGGGAGCACTCTTTGCTGATGGATGCTTGAAGGGACTCAACGGTGTTCCAG 840
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 838 TGGCCTATGCGGGAGCACTCTTTGCTGATGCATGCTTAAAGGGACTCAACGGTGTTCCAA 897
Query 841 ATGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAA 957
Query 901 AGGTAAGACTTGGGAA-GAACGGAGTGGAGGAAGTGCTAGATCTTGGGCCACTCTCAGAC 959
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 AGGTAAGACT-GGGAAAGAACGGAGTGGAGGAAGTGCTAGATCTAGGGCCACTCTCAGAC 1016
Query 960 TTTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGC 1076
Query 1020 ATCAAATTTGCCAACCAATGAGtttttttttGCTTCTTGAAACTATTGATTTTGGACTAA 1079
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1077 ATCAAATTTGCCAACCAATGAGTTTTT----GCATCTTGAAACTATTGATTTTGGACTAA 1132
Query 1080 ACTTT---T----------CTTTCCAAATTTCTGGTAGAGTTGTCTTCTTCCTCTGCGGA 1126
||||| | |||||||| |||| |||||||||||||||||||||||||||
Sbjct 1133 ACTTTAGGTTAATGTTTGTCTTTCCAATTTTCCGGTAGAGTTGTCTTCTTCCTCTGCGGA 1192
Query 1127 TTTTCGAAAATCCCTAAAATAAATTCTCCATTTCTGCTTTTCAGGAACCaa 1177
|||| || ||||| ||||||||||||||||||||| || |||||||||
Sbjct 1193 TTTTATAATTTCCCTTCAATAAATTCTCCATTTCTGCTCTTGAGGAACCAA 1243
> AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase family
protein | chr1:19854615-19856937 REVERSE LENGTH=1512
Length=1512
Score = 1064 bits (576), Expect = 0.0
Identities = 889/1040 (85%), Gaps = 22/1040 (2%)
Strand=Plus/Plus
Query 12 AAAATGTTCCGATCAATGCTTGTTCGATCCGCTTCC-CCAGTGAAGCAGG-GGCTTCTCC 69
||||||||| |||| ||||| || ||||| || || || | |||||||| || || |||
Sbjct 133 AAAATGTTCAGATCTATGCTCGTCCGATCTTCTGCCTCC-GCGAAGCAGGCGG-TTATCC 190
Query 70 GCAG-AGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCGGTGCCGCC 128
|| | | | ||| |||| | || || ||||| || ||||||| |||||| |||||||||
Sbjct 191 GCCGTA-GCTTCTCCTCCGGCTCCGTCCCCGAGCGTAAAGTCGCCATCCTTGGTGCCGCC 249
Query 129 GGTGGAATCGGCCAGCCACTTtctctcctcatgaagcttaaccctctcgtctcctctctc 188
|||||||| || ||||| ||| ||||||||||||||||||| ||||| ||||| || |||
Sbjct 250 GGTGGAATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCCCTC 309
Query 189 tccctctATGATATCGCCAACACTCCCGGCGTTGCCGCTGACGTCGGCCACATCAACACC 248
|||||||| |||||||| |||||||| || ||||| ||||| || || ||||||||||||
Sbjct 310 TCCCTCTACGATATCGCTAACACTCCTGGAGTTGCTGCTGATGTTGGTCACATCAACACC 369
Query 249 CGATCTCAGG-TATCTGGATACATGGGTGATGATAATTTGGGGAAAGCTCTAGAAGGAGC 307
||||| ||| | | |||||||||||| |||||||| |||| |||||||| ||||||||
Sbjct 370 AGATCTGAGGTTGT-TGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGC 428
Query 308 TGACCTCGTCATTATTCCAGCTGGTGTCCCGAGGAAGCCTGGCATGACCCGTGATGATCT 367
||| ||||| || |||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 429 TGATCTCGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT 488
Query 368 TTTCAACATTAATGCTGGCATTGTCAAGAACCTTAGCATC-GCCATCGCCAAGTACTGCC 426
|||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||
Sbjct 489 TTTCAACATTAATGCTGGAATTGTCAAGAACCTTTGCA-CTGCCATCGCCAAGTACTGCC 547
Query 427 CTCAAGCGCTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCTATTGCAGCTG 486
| || |||||| | || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 548 CACATGCGCTTATTAATATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCAGCTG 607
Query 487 AGATTTTTAAGAAGGCTGGTACCTACGATGAGAAGAAATTGTTTGGTGTTACCACTCTTG 546
|||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 608 AGATATTTAAGAAGGCTGGTATGTACGATGAAAAGAAATTGTTTGGTGTTACCACTCTTG 667
Query 547 ACGTTGTCAGGGCCAAGACTTTCTATGCGGGAAAATCAAATCTCA-ATGTTGCAGAGGTT 605
|||| |||||||||| |||||||||||| ||||| ||||| || | |||||||| |||
Sbjct 668 ACGTCGTCAGGGCCAGGACTTTCTATGCTGGAAAGGCAAATGTCCCA-GTTGCAGAAGTT 726
Query 606 AATGTTCCAGTTG-TTGGTGGTCATGCTGGTATTACGATTCTTCCTCTCTTTTCTCAGGC 664
|||||||| || | |||||||||||||||| |||| ||||| |||||||| ||||||||
Sbjct 727 AATGTTCCGGT-GATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGC 785
Query 665 TAGC-CCTCAAGCCAACTTGTCG-GATGATTTAATCAAGGCCCTCACAAAGCGTACCCAG 722
| | ||||||||||||||||| | ||| || | | ||||| || |||||||||||
Sbjct 786 AA-CTCCTCAAGCCAACTTGTCAAG-TGACATACTTACCGCCCTTACTAAGCGTACCCAA 843
Query 723 GACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAATG 782
|| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 844 GATGGAGGTACAGAAGTCGTGGAGGCAAAAGCAGGAAAAGGTTCAGCTACATTGTCCATG 903
Query 783 GCCTATGCGGGAGCACTCTTTGCTGATGGATGCTTGAAGGGACTCAACGGTGTTCCAGAT 842
|||||||| |||||| | || ||||||| ||||||||| |||||||||||||||||||||
Sbjct 904 GCCTATGCCGGAGCATTGTTCGCTGATGCATGCTTGAAAGGACTCAACGGTGTTCCAGAT 963
Query 843 GTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAAAG 902
|| | |||||||||| ||| |||||||| |||||||||||||||||||| ||||| |||
Sbjct 964 GTCATAGAATGCTCATACGTGCAATCTACAATCACCGAGCTTCCTTTCTTTGCCTCGAAG 1023
Query 903 GTAAGACTTGGG-AAGAACGGAGTGGAGGAAGTGCTAGATCTTGGG-CCACTCTCAGACT 960
|| || ||||| ||||| || |||||||| || || || |||||| |||||||||||||
Sbjct 1024 GTGAGG-TTGGGGAAGAATGGTGTGGAGGAGGTTCTTGA-CTTGGGACCACTCTCAGACT 1081
Query 961 TTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGAA 1020
|||| ||||||||||| ||||| | ||| |||||||||| ||||| || || ||||||
Sbjct 1082 TTGAGAAGGAAGGCTTGGAAGCATTGAAGCCAGAACTCAAGTCCTCCATAGAAAAGGGAG 1141
Query 1021 TCAAATTTGCCAACCAATGA 1040
|||| ||||||||||| |||
Sbjct 1142 TCAAGTTTGCCAACCAGTGA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5