BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478934
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15050.1 | Symbols: IQD10 | IQ-domain 10 | chr3:5066879-5067... 1227 0.0
> AT3G15050.1 | Symbols: IQD10 | IQ-domain 10 | chr3:5066879-5067960
REVERSE LENGTH=848
Length=848
Score = 1227 bits (664), Expect = 0.0
Identities = 751/792 (95%), Gaps = 10/792 (1%)
Strand=Plus/Plus
Query 1 TCTTCTGTCATGGGATCTGGATGGCTGCTCCGTTCTATCATCTGTCTAAACGGAACAAAG 60
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 60 TCTTCTGTTATGGGATCTGGATGGCTGCTCCGCTCAATCATCTGTCTAAACGGAACAAAG 119
Query 61 AAGAACAAATCAAATGGAGGCAACGTACTTTCTGAAACATCAAACCGTGTCAAACCGGTT 120
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 AAGAACAAATCAAATCGAGGCAACGTACATTCTGAAACATCAAACCGTGTCAAACCGGTT 179
Query 121 GAATCAAG--CT-CTGCTTCCACTAAGCTTACCGCAGAAGTCGCTGTTATTCGCATTCAA 177
|||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 180 GAATCAAGCTCTGCTGCTTCTACTAAGCTTACCGTAGAAGTCGCTGTTATTCGCATTCAA 239
Query 178 AAGGCTTTTCGAGCATTCAAGGCCAGAAAAAGACTATGCAGCTTGAAGAGCGCGAGGAGA 237
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 240 AAGGCTTTTCGAGCATTCAAGGCGAGAAAAAGACTATGCAGCTTGAAGAGTGCGAGGAGA 299
Query 238 TTTAA-TGCGCTGATCCAAGGCCATACAGTGAAGAATCAAACTTCGACTGCACTCAATGT 296
||||| | |||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 300 TTTAACT-CGCTGATCCAAGGCCATACAGTGATGAACCAAACCTCGACTGCACTCAATGT 358
Query 297 GATTCATTCTTGGTGCGATATACAGAGTCAGGTCAGGGCAAGACGTTTGTATATGGTGAC 356
|||||||||||||| ||||||||||| |||| |||| ||| |||||||||||||||||||
Sbjct 359 GATTCATTCTTGGTACGATATACAGAATCAGATCAGAGCACGACGTTTGTATATGGTGAC 418
Query 357 ACAAGGTAGACTCCAGCACAAAAGATTGGACAATCAG-TTGAAGCTGGAGATCAAGCTTC 415
||||||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||
Sbjct 419 ACAAGGTAGACTCCAACACAAAAGATTGGAGAATC-GTTTGAAGCTGGAGATCAAACTTC 477
Query 416 ACGAGCTAGAAGTGGAATGGTGTGGAGGTTCTGAAACAATGGAAGAGATTCTAGCAAAGA 475
||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 478 ACGAGCTAGAAGTTGAATGGTGTGGAGGCTCTGAAACAATGGAGGAGATTCTCGCAAAGA 537
Query 476 TACAACAGAGAGAAGAAGCTACGGTGAAGCGTGAAAGAGCAATGGCTTATGCTTTCTCTC 535
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 538 TACAACAGAAAGAAGAAGCTACGGTTAAGCGTGAAAGAGCAATGGCTTATGCTTTCTCTC 597
Query 536 ATCAGTGGAGGGCTAATGCTACACAGTATCTAGGTCAAGCTTCGTTTAACCTTGGCAAAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATCAGTGGAGGGCTAATGCTACACAGTATCTAGGTCAAGCTTCGTTTAACCTTGGCAAAG 657
Query 596 AAAGCTGGGGATGGAGTTGGAAAGAACGGTGGATTGCGGCTCGACCTTGGGAGATTAGGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAGCTGGGGATGGAGTTGGAAAGAACGGTGGATTGCGGCTCGACCTTGGGAGATTAGGG 717
Query 656 CTCAATGCTACGTCAGTAATAAACCGATCAAACCAGCTAAAAAACCGGAGAAATCATCAC 715
|||||||||||||| || |||||||||||||||| |||| |||||||||||||||||||
Sbjct 718 CTCAATGCTACGTC-GT--TAAACCGATCAAACCATCTAAGAAACCGGAGAAATCATCAC 774
Query 716 CCAATAATGTGATCATAAAGACCTCTGCTAAACCGGATGAAGTTGGAAACTCGAAAAAGC 775
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 775 CCAATAATGTGATCACAAAAACCTCTGCTAAACCGGATGAAGTTGGTAACTCGAAAAAGC 834
Query 776 CTGGTTCCGGAT 787
||||||||||||
Sbjct 835 CTGGTTCCGGAT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5