BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478935
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog A1... 1349 0.0
AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1... 636 0.0
AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-re... 270 1e-71
AT1G73640.1 | Symbols: AtRABA6a, RABA6a | RAB GTPase homolog A6... 115 7e-25
> AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog
A1G | chr3:5069166-5070200 FORWARD LENGTH=902
Length=902
Score = 1349 bits (730), Expect = 0.0
Identities = 823/866 (95%), Gaps = 14/866 (2%)
Strand=Plus/Plus
Query 1 TTCTTGTGCGGCGTTTCTTCTTCTCCGTTTGTCCGTACGCGtttttttACCGGTGACCTG 60
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 TTCTTGTGCGGCGTTTCTTTTTCTCCTTTTGTCCGTACGCGTTTTCTTACCGGTGACCTG 60
Query 61 AAACTCTCCGATTCTCGAAAATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCT 120
||| ||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGTCT-C-A-----AAAAATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCT 113
Query 121 ACAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ACAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCA 173
Query 181 CGCGCAACGAGTTCAGCCTCGAGTCTAAATCCACCATCGGCGTCGAATTCGCCACCCGAA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 174 CGCGCAACGAGTTCAGCCTCGAGTCTAAATCCACCATCGGTGTCGAATTCGCCACCCGAA 233
Query 241 GCATTCATGTCGATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAGAGA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 234 GCATTCATGTCGATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAGA 293
Query 301 GATACCGAGCAATCACAAGCGCTTACTATCGAGGAGCTGTAGGAGCTTTGCTTGTTTATG 360
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 294 GATACCGAGCAATCACAAGCGCATACTATCGAGGAGCTGTTGGGGCTTTGCTTGTTTATG 353
Query 361 ATGTTACTCGGCATGTGACATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTCAGAGATC 420
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 354 ATGTTACACGGCATGTGACATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTTAGAGACC 413
Query 421 ACACAGAGGCCAACATTGTGATCATGCTTGTTGGGAATAAGGCGGATCTACGTCACCTAA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 414 ACACAGAGGCCAACATTGTGATCATGCTTGTTGGGAATAAAGCGGATCTACGTCACCTAA 473
Query 481 GAGCTGTTTCAACCGAAGATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTCATGG 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 474 GAGCTGTTTCAACTGAAGATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTTATGG 533
Query 541 AGACATCTGCACTCGAAGCATTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAA 600
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGACATCTGCACTTGAAGCTTTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAA 593
Query 601 TATACCGTGTGGCAAGCAAGAAGGCCTTGGATATTGGTGATGATC-CGGCTACCCTTCCT 659
|||||||||| |||||||||||||| ||||||||||||||||||| | |||| ||||||
Sbjct 594 TATACCGTGTTGCAAGCAAGAAGGCGTTGGATATTGGTGATGATCACA-CTACTCTTCCT 652
Query 660 AAAGGCCAGAGTATTAATGTCGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGT 719
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAAGGACAAAGTATTAATGTTGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGA 712
Query 720 TGCTGCTCAAGTTGATCTTGATCAAGCCATTTTGTCTGTTTCTTAGGTAAGAATATAGTT 779
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 713 TGCTGCTCAAGTTGATCTTGATCAAGCCATTTTGTCTGTTTCTTAGGCAAGAATATAGTT 772
Query 780 TGGTTATCTATGGAAGA--TCGCAGATGATTCTT-CTGTGTGTTTTTCCTTTAGTTGCTT 836
|| |||||||||||||| | ||||||||||||| || ||||||||||||||||||||||
Sbjct 773 TGATTATCTATGGAAGACAT-GCAGATGATTCTTTCT-TGTGTTTTTCCTTTAGTTGCTT 830
Query 837 CTTTTGGTGTAAGTTTCTCATATCCT 862
|||||||||||||||||||| |||||
Sbjct 831 CTTTTGGTGTAAGTTTCTCAGATCCT 856
> AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog
A1F | chr5:24484622-24485705 FORWARD LENGTH=922
Length=922
Score = 636 bits (344), Expect = 0.0
Identities = 557/661 (84%), Gaps = 10/661 (2%)
Strand=Plus/Plus
Query 80 AATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGG 139
|||||| || |||||||| ||||| || ||||||| ||||| ||| || || ||||| ||
Sbjct 128 AATGGCCGCATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTGTTAATTGG 187
Query 140 TGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCACGCGCAACGAGTTCAGCCT 199
|| |||||||| || |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 188 AGACTCCGGCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGCGCAACGAGTTCAGTCT 247
Query 200 CGAGTCTAAATCCACCATCGGCGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAA 259
||| ||||||||||| ||||| || ||||||||||| || ||||| ||||||||||| ||
Sbjct 248 CGAATCTAAATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTCGATGATAA 307
Query 260 AATCGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAGAGAGATACCGAGCAATCACAAG 319
|||||||| |||||||||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct 308 GATCGTCAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCAATCACAAG 367
Query 320 CGCTTACTATC-GAGGAGCTGTAGGAGCTTTGCTTGTTTATGATGTTACTCGGCATGTGA 378
|| || || | |||||||||||||||| |||||||| || ||||| || | |||||||
Sbjct 368 TGCATATTA-CAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGACATGTGA 426
Query 379 CATTTGAGAACGTTGAGAGATGGTTGAAGGAGCT-CAGAGATCACACAGAGGCCAACATT 437
| |||||||||||||| |||||||| |||||||| | ||||||| ||||| ||||| ||
Sbjct 427 CGTTTGAGAACGTTGAAAGATGGTTAAAGGAGCTTC-GAGATCATACAGATGCCAATATC 485
Query 438 GTGATCATGCTT-GTTGGGAATAAGGCGGATCTACGTCACCTAAGAGCTGTTTCAACCGA 496
|| |||||| || |||||||| || |||||||| ||||||||| |||||||||| || ||
Sbjct 486 GTCATCATG-TTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCGACTGA 544
Query 497 AGATGCTAAAGCCTTT-GCAGAGAGAGAGAACACATTCTTCATGGAGACATCTGCACTCG 555
||| ||||| || ||| || |||||||||||||| ||||||||||||||||| || ||||
Sbjct 545 AGACGCTAAGGC-TTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCTCTCG 603
Query 556 AAGC-ATTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAATATACCGTGTGGCA 614
|| | || |||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct 604 AATCGAT-GAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTGGTT 662
Query 615 AGCAAGAAGGCCTTGGATATTGGTGATGATCCGGCTACCCTTCCTAAAGGCCAGAGTATT 674
||| ||| || |||||||| || || || |||||| | ||||| ||||| |||| ||
Sbjct 663 AGCCGGAAAGCGTTGGATATAGGAGACGACCCGGCTGCTCTTCCCAAAGGACAGACCATC 722
Query 675 AATGTCGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGTTGCTGCTCAAGTTGA 734
|||||||| || || || ||||| |||| ||| || ||||||||||||||||||| ||||
Sbjct 723 AATGTCGGATCGAAAGACGATGTCTCTGCGGTGAAAAAGGTTGGTTGCTGCTCAAATTGA 782
Query 735 T 735
|
Sbjct 783 T 783
> AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related
small GTP-binding family protein | chr1:1950844-1952785
REVERSE LENGTH=995
Length=995
Score = 270 bits (146), Expect = 1e-71
Identities = 392/510 (77%), Gaps = 20/510 (4%)
Strand=Plus/Plus
Query 93 AGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGGTGATTCCGGCGTC 152
||||| || || || ||||||| ||||| |||| | || || ||||| || || || |||
Sbjct 112 AGAGCCGATGAAGAGTACGATTACCTCTTCAAGCTCGTGTTGATCGGCGACTCTGGTGTC 171
Query 153 GGTAAATCCAATCTGCTTTCTCGATTCA-CGCGCAACGAGTTCAGCCTCGAGTCTAAATC 211
|| ||||| |||||||| ||||| |||| | | |||||||||| ||||| || || ||
Sbjct 172 GGCAAATCGAATCTGCTCTCTCGGTTCACCAAG-AACGAGTTCAATCTCGAATCCAAGTC 230
Query 212 CACCATCGGCGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAAAATCGTCAAGGC 271
|| || || || || ||||| ||| || || | | ||||| | ||| ||||||| ||
Sbjct 231 TACTATTGGTGTTGAGTTCGCTACCAAAACCACTAAAGTCGAAGGCAAAGTCGTCAAAGC 290
Query 272 TCAGATTTGGGACACCGCCGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTACTATC- 330
|||||||||||| || || ||||||||||||||||||||||||||||||||||| || |
Sbjct 291 TCAGATTTGGGATACTGCTGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTATTA-CA 349
Query 331 GAGGAGCTGTAGGAGCTTTGCTTGTTTATGATGTTACTCGGCATGTGACATTTGAGAACG 390
|||||||||| || ||||||||| |||| || || || |||| | ||||||||||| |
Sbjct 350 GAGGAGCTGTTGGTGCTTTGCTTATTTACGACGTGACAAGGCACGCAACATTTGAGAATG 409
Query 391 TTG-AGAGATGGTTGAAGG-AGCTCAGAG-ATCACACAGAGGCCAA-CATTGTGATCATG 446
| | |||||| | |||| | || |||| | |||||||| |||| ||| ||| | |||
Sbjct 410 CAGCA-AGATGGCT-AAGGGAACTAAGAGGA-CACACAGAC-CCAAACATAGTGGTGATG 465
Query 447 CTTGTTGGGAATAAG-GCGGATCTACGTCACCTAAGAG-CTGTTTCAACCGAAGATGCTA 504
||| | ||||| ||| ||| |||| |||||| | | | | || ||| ||||| ||||
Sbjct 466 CTTATAGGGAACAAGTGCG-ATCTGCGTCACTTG-GTGGCAGTCAAAACAGAAGAGGCTA 523
Query 505 AAGCCTTTGCAGAGAGAGAGAACACAT-TCTT-CATGGAGACATCTGCACTCGAAGCATT 562
|||||||||| |||||||| | | | | | || ||||||||| || || || || |||
Sbjct 524 AAGCCTTTGCTGAGAGAGA-ATCCC-TCTATTTCATGGAGACTTCAGCTCTAGACGCAAC 581
Query 563 GAACGTTGAGAATGCTTTCACTGAAGTGCT 592
|| ||||| || || ||||| ||||||||
Sbjct 582 CAATGTTGAAAACGCATTCACGGAAGTGCT 611
> AT1G73640.1 | Symbols: AtRABA6a, RABA6a | RAB GTPase homolog
A6A | chr1:27686992-27688127 FORWARD LENGTH=883
Length=883
Score = 115 bits (62), Expect = 7e-25
Identities = 169/220 (77%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 123 AAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTT-TCTCGATTCAC 181
|||| ||| || ||||| || || | |||||| ||||| || || ||| ||| |||| |
Sbjct 84 AAGGCGGTGTTGATCGGAGACTCAGCCGTCGGAAAATCAAACCT-CTTGTCTAGATTTTC 142
Query 182 GCGCA-ACGAGTTCAGCCTCGAGTCTAAATCC-ACCATCGGCGTCGAATTCGC-CACCCG 238
| |||||||| | | || |||||| || |||||||| || || || || ||| |
Sbjct 143 -TAAAGACGAGTTCCGGTTTGACTCTAAA-CCAACCATCGGAGTAGAGTTTGCTTACCGG 200
Query 239 AAGCATTCATGTC-GATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAG 297
|| |||| ||| || || |||||| |||||||||||||||||||||||||||| ||||
Sbjct 201 AA-TGTTCACGTCGGA-GATAAAATCATCAAGGCTCAGATTTGGGACACCGCCGGCCAAG 258
Query 298 AGAGATACCGAGCAATCACAAGCGCTTACTATCGAGGAGC 337
| |||| |||||||||||||| | ||||| || |||||
Sbjct 259 AAAGATTTCGAGCAATCACAAGTTCGTACTACCGTGGAGC 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5