BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478936 Length=1824 Score E Sequences producing significant alignments: (Bits) Value AT3G15070.1 | Symbols: | RING/U-box superfamily protein | chr3... 2603 0.0 AT1G53190.1 | Symbols: | RING/U-box superfamily protein | chr1... 211 2e-53 > AT3G15070.1 | Symbols: | RING/U-box superfamily protein | chr3:5070134-5073317 REVERSE LENGTH=1965 Length=1965 Score = 2603 bits (1409), Expect = 0.0 Identities = 1641/1751 (94%), Gaps = 24/1751 (1%) Strand=Plus/Plus Query 70 TTTCTGCAACAATCAATATGAGACAAAGAAATATGATGACTGGTTTAGACATGGAGCAGA 129 |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 150 TTTCTGCAACAAGCAATATGCGACAAAGAAATATGATGACTGGTTCAGACATGGAGCAGA 209 Query 130 ATTCTCAAAGCTTTGTTGCCCATCTTGAACCTTGCATCGGAACTAACTATCTGTATCCAG 189 ||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||||||| Sbjct 210 ATTCTCAAAGCTTTGTTCCCCATCCTGAACCTCGCATTGGAACTAACTATCTGTATCCAG 269 Query 190 ATATCCCACCCGTGAACACTGTTCCTCACTTAGAAGCGCATTCTCTGCAAGAACCTTATG 249 |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 270 ATATCCCACCAGTGAACACTGTTCCTCATTTAGAAGCTCATTCTCTGCAAGAACCTTATG 329 Query 250 ACAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATTCTTCAAATCTTG 309 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 330 ATAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATGCTTCAAATCTTG 389 Query 310 GTTCTGGCATGCCAACCGCACCAAATTTCTATGTCCCTTATGTGAATCATGAAGCTCCAC 369 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 390 GTTCTGGCATGTCAACCGCACCAAATTTCTATGTCCCTTATGTGAATTATGAAGCTCCAC 449 Query 370 CGAGTTATCTGTTGTCTCATGGAAGTCATGGTGCAGTTGTTGGAGTTACTTCCACTGAAC 429 |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 450 CGAGTTTTCTGTTGTCTCATGGAAGTAATGATGCAGTTGTTGGAGTTACTTCCACTGAAC 509 Query 430 ATGAAAGAAATGCCCATTTTATGGATCACGGATACAAAAGAAAGAGTTCTGAAGTAATAC 489 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 510 ATGAGAGAAATGCCCATTTTATGGATCACGGATTCAAAAGAAAGAGTTCTGAAGTAATAC 569 Query 490 CTGGAAATTCTCAGTATCCAGTTGCTCCGTGTTCTTTCCCTCGATTGAATACACCGGAGA 549 |||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| Sbjct 570 CTGGAAATTCTCAGTATCCAGTTGCTCCTTGTTCTTTCCCTCAATTGAATACATCGGAGA 629 Query 550 CATCACCTATCTCATTCCCACAGTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTG 609 || ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 630 CAGCACCTTTTTCATTCCCACATTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTG 689 Query 610 TGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACATCTCTCTCATGGTCATAACAACT 669 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 690 TGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACTTCTCTCTCATGGTCATAACAACT 749 Query 670 TCAGTCATGGAAACTATGCAGCTCATCCTTTTCCACCTCCTGGCTCGATCTGGTATGACC 729 ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 750 TCAGTCAAGGAAACTATGCAGCTCATCCTTTTCCACCTCTTGGCTCAATCTGGTATGACC 809 Query 730 AACAGTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTTTCAAGCACCCGCTG 789 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || | Sbjct 810 AACACTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTCTCAAGCACCTGCCG 869 Query 790 TACCTTATATGCCTGGTAACGTTGCTACTGGATATATAGACTCTGGTAATGTCTGCTTCC 849 |||||||||||| ||||||| |||||||||||| |||||| ||||||||||| ||||||| Sbjct 870 TACCTTATATGCATGGTAACATTGCTACTGGATCTATAGAATCTGGTAATGTTTGCTTCC 929 Query 850 CAAGATACCATGAAACATCTAGTAGCAGAAACCCCACACCATCTGGATACCAAAGGAACC 909 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 930 CAAGATACCATGAAACATCTAGTAGCAGAAACCCCACGCCATCTGTATACCAAAGGAACC 989 Query 910 ACTATATGAGCCATCACCCAGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAG 969 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 990 ACTATATTAGCCATCACCCCGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAG 1049 Query 970 CCTCATACGCTGAGACTCTGCATCCTGCTTCATACAGTCATGTGGGACAGGTTCAATCAA 1029 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1050 CCTCATACGCTGAGACTTTGCATCCTGCTTCATACAGTCATATGGGACAGGTTCAATCAA 1109 Query 1030 CCGGGTTCAGGGTAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGAC 1089 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1110 CCGGATTCAGGATAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGAC 1169 Query 1090 ACCGTGAATTGAATCACCTTAGAGCAATGCCCGCGAATTCAATTGCACTTTGGGAGGTAG 1149 ||||||||||| |||| |||||||||||||||||||| || |||| ||||||| |||| Sbjct 1170 ACCGTGAATTGCCTCACTTTAGAGCAATGCCCGCGAATGAAAATGCATTTTGGGAAGTAG 1229 Query 1150 GAGACTTCTACGATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGATATAG 1209 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1230 GAGACTTCTACAATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGACATAG 1289 Query 1210 AGGATATGTCATATGAGGAACTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACTG 1269 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1290 AAGATATGTCATATGAGGAGCTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACAG 1349 Query 1270 GCTTGTCAGAAGAAGATGTTAAAGATCTTCTGaaaaaaaGAACCTCGTTAACGACCAGAA 1329 |||||||| ||||||||||||||| |||||||||| |||||||||| | | | |||| Sbjct 1350 GCTTGTCATCAGAAGATGTTAAAGAACTTCTGAAAAGAAGAACCTCG--A-C--C-AGAA 1403 Query 1330 TCAACCTGGAAGAAGGTCCTTCTACCGATCAAGAAACTGATTCTTGCACGATATGCCAGG 1389 | ||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||| Sbjct 1404 TTAACCTGGAAGAAGGTCCATCTACTGATCTAGAGACTGATTCTTGCACGATATGCCAGG 1463 Query 1390 AAAACTACAAGAACCAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1449 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 AAAACTACAAGAACGAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1523 Query 1450 AATGCTTGGAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1509 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1524 AATGCTTGAAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAT 1583 Query 1510 TGGTCATGGAGAAGAAGAAGAAGCTACGGTTAAGTAGTAGAGGAGAAAAGGTTACTGC-A 1568 ||||||| |||||||||||||||||| |||||||||||||| ||||| ||||| |||| | Sbjct 1584 TGGTCATAGAGAAGAAGAAGAAGCTAAGGTTAAGTAGTAGATGAGAAGAGGTTGCTGCTA 1643 Query 1569 ----------G-G-TTATCGCTGATGGTTTTTAAGACGCTTTTTATCTATTGGTTTTATA 1616 | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1644 CAACCTAAAAGAGGTTATCGCTGATGGTTTTTAAGACGCTTTTTATCTATTGGTTTTATA 1703 Query 1617 AGAGAGAAACAGAGTCAGGGTATGTTTCAGCCTC-AAATTCTGTAAATTTGTACTTTTGT 1675 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1704 AGAGAGAAACAGAGTCAGGGTATGTTTCAGCCCCCAAATTCTGTAAATTTGTACTTTTGT 1763 Query 1676 GCACATAAAAGTGACAGTCTAAAGCTAAGATTGGCTTAATGACTATAAAAACTGTACAGA 1735 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1764 GCACATTAAAGTGACAGTCTAAAGCTAAGATTGGCTTAGTGACTATAAAAACTGTATAGG 1823 Query 1736 CTTTTTA-GGTTTTTTGTACATT-TAGGTTGCTCCTAGAGTTAA-CTTTCTTCATCAAAA 1792 |||||| |||| |||||||||| | |||||||||||||||||| ||||||||||| ||| Sbjct 1824 CTTTTTTTGGTTCTTTGTACATTCT-GGTTGCTCCTAGAGTTAAACTTTCTTCATCTAAA 1882 Query 1793 ACATCTTTTTT 1803 |||||| |||| Sbjct 1883 ACATCTCTTTT 1893 > AT1G53190.1 | Symbols: | RING/U-box superfamily protein | chr1:19837110-19840227 FORWARD LENGTH=1965 Length=1965 Score = 211 bits (114), Expect = 2e-53 Identities = 419/559 (75%), Gaps = 50/559 (9%) Strand=Plus/Plus Query 1005 AGTCATGTGGGACAGGTTCAATCAACCGGG-TTCAGGGTAAACCA--AT-ATCCCG-GAG 1059 ||||| |||| | ||||||| |||||||| ||| || || |||| || || | | ||| Sbjct 1190 AGTCACATGGGTCCGGTTCAACCAACCGGGTTTC-GGATATACCAGCATCAT-CAGCGAG 1247 Query 1060 AAGATTTTGTACCTGCAGCAATTC-TA-A-GACACCGT-GA--A-TTGAATCACCTTAGA 1112 | |||| |||||||| ||||| || || | ||||||| || | || || |||||| Sbjct 1248 ATGATTCTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTT-CCTCGGCTTAGA 1306 Query 1113 GCAATGCCCG-CGAATTCAA-TTGCACTTTGGGAGGTAGGAGACTT-C-T-ACGATGCT- 1166 | ||||| | | | | || |||| |||| |||| | |||||||| | | | | || Sbjct 1307 GTGATGCCTGATG-A-TGAAGTTGCGCTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTG 1364 Query 1167 G--TTAATTATGTCGATCATCATCAAGACATGCGCTTAGATATAGAGGATATGTCATATG 1224 | |||| | | |||||||||| ||| ||||| || || || ||||| ||||| || | Sbjct 1365 GAAATAATCACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACG 1424 Query 1225 AGGAACTTCTTGCTTTGAGCGA-CCAGATTGGAACTGTGAAGACTGGCTTGTCAGAAGAA 1283 |||| |||||||||||||| || | | |||||||| || || ||||| ||| | || ||| Sbjct 1425 AGGAGCTTCTTGCTTTGAGTGAGCGA-ATTGGAACAGTAAACACTGGGTTGCCGGAGGAA 1483 Query 1284 GATGTTAAAG-ATC-TTCTGaaaaaaaGAACCTCGTTAACGACCAGAATCAACCTGGAAG 1341 |||||| ||| ||| || |||||| |||||| | ||| | |||||||| | ||| Sbjct 1484 GATGTT-AAGAATCATT-TGAAAACAAGAACAT-GTT-----CTGGAATCAACTTTGAAA 1535 Query 1342 AAG-GTC--C-T-TCTAC---C----GATCAAGAAACTGATTCTTGCACGATATGCCAGG 1389 ||| ||| | | | || | ||| |||||| || | ||||| ||||| |||| Sbjct 1536 AAGAGTCGTCGTCCCCACGAACTAAAGATTTAGAAACCGAACCGTGCACTATATGTCAGG 1595 Query 1390 AAAACTACAAGAACCAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1449 ||| || ||||||| |||| ||||| || || |||||||| |||| | || ||||||| Sbjct 1596 AAAGCTTCAAGAACGAAGAAAAGATTGCGACTTTGGATTGCGGGCACGAGTATCATGCAG 1655 Query 1450 AATGCTTGGAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1509 | ||||||||||| ||| || || | |||||||||||||||||||||||||||||||||| Sbjct 1656 AGTGCTTGGAGAAATGGCTGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1715 Query 1510 TGGTCATGGAGAAGAAGAA 1528 ||||||||||||||| ||| Sbjct 1716 TGGTCATGGAGAAGA-GAA 1733 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90260579910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5