BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478936
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15070.1 | Symbols: | RING/U-box superfamily protein | chr3... 2603 0.0
AT1G53190.1 | Symbols: | RING/U-box superfamily protein | chr1... 211 2e-53
> AT3G15070.1 | Symbols: | RING/U-box superfamily protein | chr3:5070134-5073317
REVERSE LENGTH=1965
Length=1965
Score = 2603 bits (1409), Expect = 0.0
Identities = 1641/1751 (94%), Gaps = 24/1751 (1%)
Strand=Plus/Plus
Query 70 TTTCTGCAACAATCAATATGAGACAAAGAAATATGATGACTGGTTTAGACATGGAGCAGA 129
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 150 TTTCTGCAACAAGCAATATGCGACAAAGAAATATGATGACTGGTTCAGACATGGAGCAGA 209
Query 130 ATTCTCAAAGCTTTGTTGCCCATCTTGAACCTTGCATCGGAACTAACTATCTGTATCCAG 189
||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||
Sbjct 210 ATTCTCAAAGCTTTGTTCCCCATCCTGAACCTCGCATTGGAACTAACTATCTGTATCCAG 269
Query 190 ATATCCCACCCGTGAACACTGTTCCTCACTTAGAAGCGCATTCTCTGCAAGAACCTTATG 249
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 270 ATATCCCACCAGTGAACACTGTTCCTCATTTAGAAGCTCATTCTCTGCAAGAACCTTATG 329
Query 250 ACAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATTCTTCAAATCTTG 309
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 330 ATAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATGCTTCAAATCTTG 389
Query 310 GTTCTGGCATGCCAACCGCACCAAATTTCTATGTCCCTTATGTGAATCATGAAGCTCCAC 369
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 390 GTTCTGGCATGTCAACCGCACCAAATTTCTATGTCCCTTATGTGAATTATGAAGCTCCAC 449
Query 370 CGAGTTATCTGTTGTCTCATGGAAGTCATGGTGCAGTTGTTGGAGTTACTTCCACTGAAC 429
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 450 CGAGTTTTCTGTTGTCTCATGGAAGTAATGATGCAGTTGTTGGAGTTACTTCCACTGAAC 509
Query 430 ATGAAAGAAATGCCCATTTTATGGATCACGGATACAAAAGAAAGAGTTCTGAAGTAATAC 489
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 510 ATGAGAGAAATGCCCATTTTATGGATCACGGATTCAAAAGAAAGAGTTCTGAAGTAATAC 569
Query 490 CTGGAAATTCTCAGTATCCAGTTGCTCCGTGTTCTTTCCCTCGATTGAATACACCGGAGA 549
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 570 CTGGAAATTCTCAGTATCCAGTTGCTCCTTGTTCTTTCCCTCAATTGAATACATCGGAGA 629
Query 550 CATCACCTATCTCATTCCCACAGTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTG 609
|| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 630 CAGCACCTTTTTCATTCCCACATTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTG 689
Query 610 TGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACATCTCTCTCATGGTCATAACAACT 669
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 690 TGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACTTCTCTCTCATGGTCATAACAACT 749
Query 670 TCAGTCATGGAAACTATGCAGCTCATCCTTTTCCACCTCCTGGCTCGATCTGGTATGACC 729
||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 750 TCAGTCAAGGAAACTATGCAGCTCATCCTTTTCCACCTCTTGGCTCAATCTGGTATGACC 809
Query 730 AACAGTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTTTCAAGCACCCGCTG 789
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 810 AACACTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTCTCAAGCACCTGCCG 869
Query 790 TACCTTATATGCCTGGTAACGTTGCTACTGGATATATAGACTCTGGTAATGTCTGCTTCC 849
|||||||||||| ||||||| |||||||||||| |||||| ||||||||||| |||||||
Sbjct 870 TACCTTATATGCATGGTAACATTGCTACTGGATCTATAGAATCTGGTAATGTTTGCTTCC 929
Query 850 CAAGATACCATGAAACATCTAGTAGCAGAAACCCCACACCATCTGGATACCAAAGGAACC 909
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 930 CAAGATACCATGAAACATCTAGTAGCAGAAACCCCACGCCATCTGTATACCAAAGGAACC 989
Query 910 ACTATATGAGCCATCACCCAGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAG 969
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 990 ACTATATTAGCCATCACCCCGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAG 1049
Query 970 CCTCATACGCTGAGACTCTGCATCCTGCTTCATACAGTCATGTGGGACAGGTTCAATCAA 1029
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1050 CCTCATACGCTGAGACTTTGCATCCTGCTTCATACAGTCATATGGGACAGGTTCAATCAA 1109
Query 1030 CCGGGTTCAGGGTAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGAC 1089
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CCGGATTCAGGATAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGAC 1169
Query 1090 ACCGTGAATTGAATCACCTTAGAGCAATGCCCGCGAATTCAATTGCACTTTGGGAGGTAG 1149
||||||||||| |||| |||||||||||||||||||| || |||| ||||||| ||||
Sbjct 1170 ACCGTGAATTGCCTCACTTTAGAGCAATGCCCGCGAATGAAAATGCATTTTGGGAAGTAG 1229
Query 1150 GAGACTTCTACGATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGATATAG 1209
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1230 GAGACTTCTACAATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGACATAG 1289
Query 1210 AGGATATGTCATATGAGGAACTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACTG 1269
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1290 AAGATATGTCATATGAGGAGCTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACAG 1349
Query 1270 GCTTGTCAGAAGAAGATGTTAAAGATCTTCTGaaaaaaaGAACCTCGTTAACGACCAGAA 1329
|||||||| ||||||||||||||| |||||||||| |||||||||| | | | ||||
Sbjct 1350 GCTTGTCATCAGAAGATGTTAAAGAACTTCTGAAAAGAAGAACCTCG--A-C--C-AGAA 1403
Query 1330 TCAACCTGGAAGAAGGTCCTTCTACCGATCAAGAAACTGATTCTTGCACGATATGCCAGG 1389
| ||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1404 TTAACCTGGAAGAAGGTCCATCTACTGATCTAGAGACTGATTCTTGCACGATATGCCAGG 1463
Query 1390 AAAACTACAAGAACCAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1449
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 AAAACTACAAGAACGAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1523
Query 1450 AATGCTTGGAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1509
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AATGCTTGAAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAT 1583
Query 1510 TGGTCATGGAGAAGAAGAAGAAGCTACGGTTAAGTAGTAGAGGAGAAAAGGTTACTGC-A 1568
||||||| |||||||||||||||||| |||||||||||||| ||||| ||||| |||| |
Sbjct 1584 TGGTCATAGAGAAGAAGAAGAAGCTAAGGTTAAGTAGTAGATGAGAAGAGGTTGCTGCTA 1643
Query 1569 ----------G-G-TTATCGCTGATGGTTTTTAAGACGCTTTTTATCTATTGGTTTTATA 1616
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 CAACCTAAAAGAGGTTATCGCTGATGGTTTTTAAGACGCTTTTTATCTATTGGTTTTATA 1703
Query 1617 AGAGAGAAACAGAGTCAGGGTATGTTTCAGCCTC-AAATTCTGTAAATTTGTACTTTTGT 1675
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1704 AGAGAGAAACAGAGTCAGGGTATGTTTCAGCCCCCAAATTCTGTAAATTTGTACTTTTGT 1763
Query 1676 GCACATAAAAGTGACAGTCTAAAGCTAAGATTGGCTTAATGACTATAAAAACTGTACAGA 1735
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1764 GCACATTAAAGTGACAGTCTAAAGCTAAGATTGGCTTAGTGACTATAAAAACTGTATAGG 1823
Query 1736 CTTTTTA-GGTTTTTTGTACATT-TAGGTTGCTCCTAGAGTTAA-CTTTCTTCATCAAAA 1792
|||||| |||| |||||||||| | |||||||||||||||||| ||||||||||| |||
Sbjct 1824 CTTTTTTTGGTTCTTTGTACATTCT-GGTTGCTCCTAGAGTTAAACTTTCTTCATCTAAA 1882
Query 1793 ACATCTTTTTT 1803
|||||| ||||
Sbjct 1883 ACATCTCTTTT 1893
> AT1G53190.1 | Symbols: | RING/U-box superfamily protein | chr1:19837110-19840227
FORWARD LENGTH=1965
Length=1965
Score = 211 bits (114), Expect = 2e-53
Identities = 419/559 (75%), Gaps = 50/559 (9%)
Strand=Plus/Plus
Query 1005 AGTCATGTGGGACAGGTTCAATCAACCGGG-TTCAGGGTAAACCA--AT-ATCCCG-GAG 1059
||||| |||| | ||||||| |||||||| ||| || || |||| || || | | |||
Sbjct 1190 AGTCACATGGGTCCGGTTCAACCAACCGGGTTTC-GGATATACCAGCATCAT-CAGCGAG 1247
Query 1060 AAGATTTTGTACCTGCAGCAATTC-TA-A-GACACCGT-GA--A-TTGAATCACCTTAGA 1112
| |||| |||||||| ||||| || || | ||||||| || | || || ||||||
Sbjct 1248 ATGATTCTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTT-CCTCGGCTTAGA 1306
Query 1113 GCAATGCCCG-CGAATTCAA-TTGCACTTTGGGAGGTAGGAGACTT-C-T-ACGATGCT- 1166
| ||||| | | | | || |||| |||| |||| | |||||||| | | | | ||
Sbjct 1307 GTGATGCCTGATG-A-TGAAGTTGCGCTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTG 1364
Query 1167 G--TTAATTATGTCGATCATCATCAAGACATGCGCTTAGATATAGAGGATATGTCATATG 1224
| |||| | | |||||||||| ||| ||||| || || || ||||| ||||| || |
Sbjct 1365 GAAATAATCACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACG 1424
Query 1225 AGGAACTTCTTGCTTTGAGCGA-CCAGATTGGAACTGTGAAGACTGGCTTGTCAGAAGAA 1283
|||| |||||||||||||| || | | |||||||| || || ||||| ||| | || |||
Sbjct 1425 AGGAGCTTCTTGCTTTGAGTGAGCGA-ATTGGAACAGTAAACACTGGGTTGCCGGAGGAA 1483
Query 1284 GATGTTAAAG-ATC-TTCTGaaaaaaaGAACCTCGTTAACGACCAGAATCAACCTGGAAG 1341
|||||| ||| ||| || |||||| |||||| | ||| | |||||||| | |||
Sbjct 1484 GATGTT-AAGAATCATT-TGAAAACAAGAACAT-GTT-----CTGGAATCAACTTTGAAA 1535
Query 1342 AAG-GTC--C-T-TCTAC---C----GATCAAGAAACTGATTCTTGCACGATATGCCAGG 1389
||| ||| | | | || | ||| |||||| || | ||||| ||||| ||||
Sbjct 1536 AAGAGTCGTCGTCCCCACGAACTAAAGATTTAGAAACCGAACCGTGCACTATATGTCAGG 1595
Query 1390 AAAACTACAAGAACCAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1449
||| || ||||||| |||| ||||| || || |||||||| |||| | || |||||||
Sbjct 1596 AAAGCTTCAAGAACGAAGAAAAGATTGCGACTTTGGATTGCGGGCACGAGTATCATGCAG 1655
Query 1450 AATGCTTGGAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1509
| ||||||||||| ||| || || | ||||||||||||||||||||||||||||||||||
Sbjct 1656 AGTGCTTGGAGAAATGGCTGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1715
Query 1510 TGGTCATGGAGAAGAAGAA 1528
||||||||||||||| |||
Sbjct 1716 TGGTCATGGAGAAGA-GAA 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5