BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478938
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15090.1 | Symbols: | GroES-like zinc-binding alcohol dehyd... 2409 0.0
> AT3G15090.1 | Symbols: | GroES-like zinc-binding alcohol dehydrogenase
family protein | chr3:5076689-5079117 FORWARD LENGTH=1506
Length=1506
Score = 2409 bits (1304), Expect = 0.0
Identities = 1437/1501 (96%), Gaps = 10/1501 (1%)
Strand=Plus/Plus
Query 1 GTAAACAAACCCGCTCTGCGGACGCAAATGCTGCCACGTCTTTAATTTCCGTTTCTGTGT 60
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GTAAACAAAGCCGCTCTGCGGACGCAAATGCTGCCACGTCTTCAATTTCCGTTTCTGTGT 60
Query 61 AAACAAGAAAACCTaaaaaaaCAGAAGCAAGCAGATTCTCGCATCAAC---GAAGAAGAA 117
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AAACAAGAAAACCT-AAAAAACAGAAGCAAGCAGATTCTCGCATCAACGAAGAAGAAGAA 119
Query 118 G--AA-GACGAGTAAATTGATTTCATAGACGACGGAGAAATGCGAGTGATGAGATCATTG 174
| || |||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 GAAAAGGACGAGTAGATTGATTTCTTAGACGACGGAGAAATGCGAGTGATGAGATCATTG 179
Query 175 CGCTGTAATTCCGGTGCAGGATTGATTTCCCGGCCGGCGAGGTTAAGTTCTCTTCGGAGC 234
||| ||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 180 CGCGGTAATTCCGGTGCTGGATTGGTTTTCCGGCCGGCGAGGTTAAATTCTCTTCGGAGC 239
Query 235 GTTTTTACCGGTTGCCGTGCTGTGATGTTACCCCGCTTTGGCGGTCCGGAGGTTTTTGAG 294
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 240 GTCTTTACCGGTTGCCGTGCTGTGATTTTGCCCCGCTTTGGTGGTCCGGAGGTTTTTGAG 299
Query 295 CTCCGGGAGAATGTTCCGGTGCCGAATCTGAATCCAAATGAGGTTCTTGTCCGA-GCGAA 353
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 300 CTCCGGGAGAATGTTCCGGTGCCGAATCTGAATCCAAATGAGGTTCTTGT-CAAGGCGAA 358
Query 354 AGCTGTTTCCGTCAATCCTCTTGATTGCAGAATACGAGCTGGATATGGACGTTCTGTATT 413
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTGTCTCCGTTAATCCTCTTGATTGCAGAATACGAGCTGGATATGGACGTTCTGTATT 418
Query 414 CCAACCGCATCTACCTATTATAGTTGGACGCGATATCAGTGGTGAAGTTGCGGCAATTGG 473
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 419 CCAACCGCATCTACCTATTATAGTTGGACGTGATGTCAGTGGTGAAGTTGCGGCAATTGG 478
Query 474 GACTTCAGTAAAGTCACTTAAAGTTGGACAAGAAGTTTTTGGTGCGTTGCATCCTACGGC 533
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 479 GACTTCAGTAAAGTCACTTAAAGTAGGACAAGAAGTTTTTGGTGCGTTGCATCCGACGGC 538
Query 534 GTTGAGAGGTACTTATACTGACTATGGAATTCTTTCGGAAGACGAACTCACGGAAAAGCC 593
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTAAGAGGTACTTATACTGACTATGGAATTCTTTCGGAAGACGAACTCACGGAAAAGCC 598
Query 594 ATCATCTGTTTCACATGTGGTAGCAAGTGCCATTCCTTTTGCAGCTTTGACTGCTTGCCG 653
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 599 ATCATCAATTTCACATGTGGAAGCAAGTGCCATTCCTTTTGCAGCTTTGACTGCTTGGCG 658
Query 654 TGCTTTGAAGAGTAATGCTCGGATAACTGAAGGACAAAGGCTCTTAGTCTTTGGAGGAGG 713
|||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 659 TGCTTTGAAGAGTAATGCAAGGATAACTGAAGGACAAAGACTATTAGTCTTTGGAGGAGG 718
Query 714 AGGAGCAGTAGGTTTTTCTGCAATCCAGCTTGCGGTAGCATCTGGGTGCCATGTTACGGC 773
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 719 AGGAGCAGTAGGTTTTTCTGCAATCCAGCTTGCGGTAGCATCTGGGTGTCATGTTACAGC 778
Query 774 CTCTTGTGTGGGTCAGACTAAAGACAGAATACTTGCAGCTGGTGCCGAGCAAGCTGTTGA 833
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 CTCTTGTGTTGGTCAGACTAAAGACAGAATACTTGCAGCTGGGGCCGAGCAAGCTGTTGA 838
Query 834 CTACACAACCGAGGACATTGAGTTGGCGGTAAAAGGAAAATTTGATGCTGTGTTGGACAC 893
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 839 CTACACAACCGAGGACATTGAGTTGGCGGTAAAAGGAAAATTTGATGCCGTGTTAGATAC 898
Query 894 TATTGGTGGGCCTGAAACAGAGAGAATAGGCATTAACTTCTTAAGGAAGGGTGGAAACTA 953
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TATTGGTGGGCCTGAAACGGAGAGAATAGGCATTAACTTCTTAAGGAAGGGTGGAAACTA 958
Query 954 TATGACTCTCCAGGGTGAGGCTGCATCGTTGACTGATAAATACGGTTTTGTGGTTGGGCT 1013
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TATGACTCTTCAGGGTGAGGCTGCATCGTTGACTGATAAATACGGTTTTGTGGTTGGGCT 1018
Query 1014 TCCCCTTGCAACATCACTCTTGATGAAGAAAAAGATACAATATCAGTATTCTCATGGAAT 1073
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCCCCTTGCAACATCGCTCTTGATGAAGAAAAAGATACAATATCAGTATTCTCATGGAAT 1078
Query 1074 AGACTATTGGTGGACGTATATGAGGGCTGATCCTGAAGGTCTAGCCGAGATTCAGCGGTT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 AGACTATTGGTGGACGTATATGAGGGCTGATCCTGAAGGTCTAGCCGAGATTCAGCGTTT 1138
Query 1134 AGTTGGAGCCGGAAAGCTAAAGATACCTGTCGAAAAAACTTTTTCAATAACCGATGTTGT 1193
||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 1139 AGTTGGAGCTGGAAAGCTAAAAATACCTGTTGAAAAAACATTTCCAATAACCGATGTTGT 1198
Query 1194 TGCAGCTCATGAAGCCAAGGAGAAGAAGCAGATTCCGGGTAAGGTGGTTCTAGAGTTCTG 1253
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1199 AGCAGCTCATGAAGCCAAGGAGAAGAAACAGATTCCGGGTAAGGTGGTTCTAGAGTTCTG 1258
Query 1254 AACTACATATACATAGTAGCAATAATAACACCTGCATAGTTCTCTAGCAGTTGTTCTTTC 1313
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AACTACATATACATAGTAGAAATAATAACACCTGCATAGTTCTCTAGCAGTTGTTCTTTC 1318
Query 1314 TAGAATTTACACGCAGAGAAACAAATGTTTCGCGTCTGGAGTTTTCTGTAAATGAGATCT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGAATTTACACGCAGAGAAACAAATGTTTCGCGTCTGGAGTTTTCTGTAAATGAGATCT 1378
Query 1374 ATCAGGCTTAGATTCAGATCAAGAACTTGAAGTTTCTGTATAGACTTTCCAAAAGGTTCG 1433
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1379 ATCAGGCTTAGATTCAGATCAAGAACTTGAAGTGTCTGTATAGACTTTCCAAAGGGTTCG 1438
Query 1434 GTTTTATTTGGATTTTGTCTGTTTTGCAAG-TACTAAGCCTAGTAATGGAAATGGTTTAG 1492
||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1439 TTTTTATTTGGATTTTGTCTGTGTTGCAAACTACTAAGCCAAGTAATGGAAATGGTTTAG 1498
Query 1493 A 1493
|
Sbjct 1499 A 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5