BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478948
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15160.1 | Symbols: | unknown protein; Has 266 Blast hits t... 2961 0.0
> AT3G15160.1 | Symbols: | unknown protein; Has 266 Blast hits
to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa
- 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes
- 9 (source: NCBI BLink). | chr3:5104367-5108473 FORWARD
LENGTH=2098
Length=2098
Score = 2961 bits (1603), Expect = 0.0
Identities = 1803/1898 (95%), Gaps = 19/1898 (1%)
Strand=Plus/Plus
Query 1 ATGGCATGCAGTTTAAGGATATAGATCTTTGGA-AACCGCCGTCGTCTTCGCTCCAATCC 59
|||||||| |||||||||||||||||||||| | || || |||||||||| ||||||||
Sbjct 58 ATGGCATGTAGTTTAAGGATATAGATCTTTGAATAAACGACGTCGTCTTCTTTCCAATCC 117
Query 60 TCCTCCTGCTCCGGGACTC-GGAGTCGCTGAAGCCGAAACTTCTTCATCCA-C--C--AT 113
| || | ||||||||||| |||||||| ||||| |||||||||||||||| | | ||
Sbjct 118 T-CT--TTCTCCGGGACTCTGGAGTCGCCGAAGCTGAAACTTCTTCATCCATCATCATAT 174
Query 114 --T-TGAA--TTTTCTACTGAGCTTCTTTTTGTTTGAGAACATGAGTGATCAAGAAGGAG 168
| |||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 175 CATATGAATTTTTTCTAGTGATCTTCTTTTTGATTGAGAACATGAGTGATCAAGAAGGAG 234
Query 169 ACTGGAATTTTTACCTCAGAATCCTAAGCAATAGCGCGCGGGATTCCACGGATCCTGCTT 228
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 235 ACTGGGATTTTTACCTCAGAATCCTAAGCAACAGCGCGCGGGATTCTACGGATCCTGCTT 294
Query 229 CTGATCCATCTATTCTACAATCAGTGAAGAAGCTACATGGGTTCTGTAAATTGGAGAAAT 288
||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 295 CTGATCCATCTATACTACAATCAGTGAAGAAGCTGCATGGGTTCTGTAAAATGGAGAAAT 354
Query 289 CAGATGATCTTGTGGCTAGAATTTATCCACAAATCAATAAGGTCTTCCATCGTTCGGTTG 348
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 355 CAGATGATCTTGTGGCTAGAATTTATCCACAATTCAATAAAGTCTTCCATCGTTCGGTTG 414
Query 349 CTTCACTGTCTCAGTCTGAGTCAGGGACGTCCAAAGGCCTTCTCTTGCTAGCCATTCTTC 408
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 CTTCACTATCTCAGTCCGAGTCAGGGGCGTCCAAAGGCCTTCTCTTGCTAGCCATTCTTC 474
Query 409 AGTTTTTTCTTGATTTTGGGGATATGGTTCTGCACGATGCGGACCCAAGTTTGAGGACAT 468
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 475 AGTTTTTTCTTGATTTTGGGGATATGGTTCTGCACGATTCTGACCCAAGTTTGAGGACAT 534
Query 469 TCTTCCGCTCATGTCTTAGCCGTGAGTTCTCAGATTCTGCTGTTGCAGAGGCAACTTGTG 528
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 535 TCTTCCGCTCATGTCTTAGCCGTGAGTTCTCAGATGCCGCTGTGGCAGAGGCAACTTGTG 594
Query 529 AATTCCTTGTTGCGAACCAGAGAAAGCTCTTAGCATCTTTCCCAAACTTACTCCCTCAGT 588
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AATTCCTTGTTGTGAACCAAAGAAAGCTCTTAGCATCTTTCCCAAACTTACTCCCTCAGT 654
Query 589 TTTTCCCGTTGTTGCTTAAGCTCATTGCCTGGAATTGGGAGAAGTTGGAGAAGTCATTCC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 TTTTCCCGTTGTTGCTTAAGCTCATTGCCTGGAATTGGGAGAAGTTGGAGAAGTCCTTCC 714
Query 649 TGAAGATATTTCCAGGACTGATATCTCCTGGGTCATTTCTTCCTCTGTTTCCATCCATTG 708
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 TGAAGATATTTCCAGGACTGATATCACCTGGGTCATTTCTTCCTCTGTTTCCATCCATTG 774
Query 709 TAGATTTGCCAATGTTGGTTGTGGCATTAGAAAAGGTGGAAAGGAGCTCGGGGTCTGGGT 768
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 TAGACTTGCCAATATTGGTCGTGGCATTAGAAAAGGTGGAAAGGAGCTCGGGGTCGGGGT 834
Query 769 CAAGGGTTGGAGGTAGCATTGCTTCAATTCAGAAGAGTGCAGCTCCGGAGATGCTTCTTG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAAGGGTTGGAGGTAGCATTGCTTCAATTCAGAAGAGTGCAGCTCCGGAGATGCTTCTTG 894
Query 829 CCCTTATGGATGAAGCATATACTGGTTCAACCATCGGGGATGGAGGAGATGACTCTGAAT 888
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 895 CCCTTATGGATGAAGCATATACTGGTTCAACCATCGGGGATGGAGGGGATGACTCTGAAT 954
Query 889 CTGAAGATAACAATACAATAGATGTAGCTGATCCTCTGTTTCTGGAGCTTCTGAAAGACG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 CTGAAGATAACAATACAATAGATGTAGCTGATCCTCTGTTTCTGGAGCTTCTGAAGGACG 1014
Query 949 AAAATGATGGTCTAGCTGAAAGACACCGCGCTTCTCCTGCATTGAATGCAGCGCTGCAGG 1008
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 AAAATGATGGTCTAGCGGAAAGACACCGCGCTTCTCCTACATTGAATGCAGCGCTGCAGG 1074
Query 1009 CTGCTGCACGTGGTCCTCAGTCTGAGAGGATGAAGCAGGCTCTTAAGATTGCTCCTCGAC 1068
|||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 1075 CTGCTGCAAGTGGTCCTCGGTCAGAGAGGATGAAGCAGACTCTTAAGATTGCTCCCCGAC 1134
Query 1069 TTCTTGATGTCTACTTTAGTGTTACATTGCGAGATGCAAATGACTCTCTGATCTGTGCAT 1128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 TTCTTGATGTCTACTTTAGTGTTACATTGCGAGATGCAAATGACTCTCTGATCTGTGCTT 1194
Query 1129 TAATCCCTCTACTCATGACAAGAAACTCTACAATGTTTCCGGATAAGAATTTTTCTCATG 1188
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1195 TAATCCCTCTACTCATGACAAGAAACTCTACAATGTTTCCGGATAAGATTTTTTCTCATG 1254
Query 1189 AGATCCGTAAGAGGCTACTGGAATTCGTACTAGCTGCATTTCAGAGGTCTCCAAATTTCA 1248
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1255 AGATCCGTAGGAGGCTACTGGAATTTGTACTAGCTGCATTTCAGAGGTCTCCAAATTTCA 1314
Query 1249 TTGCCCTGTTGAAAAAGCCTATAATTGACCGGCTTGGAGAAGCTTACGATGATGTTGCAA 1308
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1315 TTGCCCTGTTGAAAAAGCCTATTATTGACCGACTTGGGGAAGCTTACGATGATGTTGCAA 1374
Query 1309 AGAGAGAGTTAGCCTTACAGCTATGTTGGGCAATTGGAGAGTATGGTGGCGGGGGAGAAT 1368
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1375 AGAGAGAGTTAGCCTTACAGCTATGTTGGGCAATTGGAGAGTATGGTGGTGGGGGAGAAT 1434
Query 1369 CACACAAGGAAGCTGCTCGCGAGCTTTTTGAAAGTTTAGAGTTGCTTCTATATGAGAATC 1428
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 CTCACAAGGAAGCTGCTCGAGAGCTTTTTGAAAGTTTAGAGTTGCTTGTATATGAGAATC 1494
Query 1429 TCTCATCAAGCCGCCTAGGTTTGAGGCAAGAGTCTGGGAATGGTTCCAGAAGAACAACAC 1488
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1495 TCTCATCAAGCCGCCTAGGTTTGAGGCAAGAATCTGGGAATGGTTCAAGAAGAACAACAC 1554
Query 1489 AGTCAAGACTTTTGTGTTTTGTTGTGACAGCTATTGCAAAGCTTGCAACATATCACCGGG 1548
||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 1555 AGTCAAGACTTCTGTGTTTTGTAGTGACAGCTATCGCAAAGCTCGCAACATATCACCGAG 1614
Query 1549 AATTGTTACCAAGAGCCCGTGTCGCCTTGGGAAAGGTAGTACGGTCTCGGATATCTGATG 1608
|||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1615 AATTATTACCAAGAGCCCGCGTCGCCTTGGGAAAGGTAGTAAAGTCTCGGATATCTGATG 1674
Query 1609 CAAGGGTTTGGAGACGAGCACATGATTACTTAGGACTAATGAACGAACCAGGAATCTGTT 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CAAGGGTTTGGAGACGAGCACATGATTACTTAGGACTAATGAACGAACCAGGAATCTGTT 1734
Query 1669 GGTCTGTTTTAGGACCTTCGCGGGTTTCAGAAAAACGGTTTCCAGGCACAGTTAACTGGA 1728
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 GGTCTGTGTTAGGACCTTCACGGGTTTCAGAAAAACGGTTTCCAGGCACAGTTAACTGGA 1794
Query 1729 GCGAGGGCGGACAAAAAATGGTTGCACACATTCCATTTCACATCCTTAGTGAACAAGGAG 1788
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1795 GCGAGGGTGGACAAAAAATGGTTGCACACATTCCATTTCACATTCTTAGTGAACAAGGAG 1854
Query 1789 GTCCTCCGTTCCATGACTTTGCTTTCTCCGATGTCATCCCCAAAAACTGATCAAACAA-- 1846
||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1855 GTCCTCCATTCCATGACTTTGCTTTCTCCGATATCATCCCCAAAAACTAATCAAACAAAC 1914
Query 1847 --GTCTCTTAAATTGTTTTTTGTTGTGAATAGTGAAAC 1882
|||||||||||||| |||| ||||||||||||||||
Sbjct 1915 AAGTCTCTTAAATTGTGTTTTATTGTGAATAGTGAAAC 1952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93172211520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5