BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478949
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15170.1 | Symbols: CUC1, ANAC054, ATNAC1 | NAC (No Apical M... 1515 0.0
AT4G17980.1 | Symbols: anac071, NAC071 | NAC domain containing ... 58.4 1e-07
> AT3G15170.1 | Symbols: CUC1, ANAC054, ATNAC1 | NAC (No Apical
Meristem) domain transcriptional regulator superfamily protein
| chr3:5109883-5111447 FORWARD LENGTH=974
Length=974
Score = 1515 bits (820), Expect = 0.0
Identities = 929/980 (95%), Gaps = 14/980 (1%)
Strand=Plus/Plus
Query 1 ATTTTTAGAGCTTTCTTCTTGTGCCGACAATGGATGTTGATGTGTTTAACGGTTGGGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTTAGAGCTTTCTTCTTGTGCCGACAATGGATGTTGATGTGTTTAACGGTTGGGGGA 60
Query 61 GGCCAAGGTATGAAGATGAAACCCTAATGCCACCTGGGTTTAGATTTCATCCAACTGATG 120
||||||| | |||||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 61 GGCCAAGATTTGAAGATGAATCCCTTATGCCACCTGGGTTTAGGTTTCATCCAACTGATG 120
Query 121 AAGAGCTGATCACTTACTATCTCCTCAAGAAAGTTCTTGACTCCAATTTCTCTTGTGCCG 180
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 121 AAGAGCTGATCACTTACTATCTCCTCAAGAAGGTTCTTGACTCTAATTTCTCTTGTGCCG 180
Query 181 CCATTTCTCAAGTTGATCTCAACAAGTCTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATTTCTCAAGTTGATCTCAACAAGTCTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAAA 240
Query 241 TGGGGGAGAAAGAATGGTACTTTTTCACACTAAGAGATCGAAAATACCCAACTGGACTAA 300
|||||||||| || |||||||| |||||||||||||| || ||||||||||| ||||| |
Sbjct 241 TGGGGGAGAAGGAGTGGTACTTCTTCACACTAAGAGACCGTAAATACCCAACGGGACTGA 300
Query 301 GAACGAACAGAGCAACAGAAGCTGGTTACTGGAAAGCCACAGGTAAAGACAGAGAGATCA 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 GAACGAACAGAGCAACAGAAGCTGGTTACTGGAAAGCCACTGGTAAAGACAGAGAGATCA 360
Query 361 AAAGCTCAAAGACAAAATCACTTCTCGGGATGAAGAAAACTCTTGTCTTTTACAAAGGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGCTCAAAGACAAAATCACTTCTCGGGATGAAGAAAACTCTTGTCTTTTACAAAGGCA 420
Query 421 GAGCTCCTAAAGGAGAGAAGAGTTGTTGGGTCATGCATGAGTATCGCCTTGACGGCAAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGCTCCTAAAGGAGAGAAGAGTTGTTGGGTCATGCATGAGTATCGCCTTGACGGCAAAT 480
Query 481 TCTCTTACCATTACATTTCTTCTTCCGCTAAGGATGAATGGGTTCTCTGTAAAGTTTGTC 540
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCTTACCATTACATTTCCTCCTCCGCTAAGGATGAATGGGTTCTCTGTAAAGTTTGTC 540
Query 541 TGAAAAGCGGCGTAGTTAGCAGAGAGACAAACTTGAtctcttcttcttcttcttcttctt 600
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 541 TGAAAAGCGGCGTAGTTAGTAGAGAGACGAACTTGATCTCTTCTTCTTCTTCTTCT---- 596
Query 601 ctGCCGTCGCCGGAGAGTACTCCTCTGCCGGATCTGTAATTGCTCCGATCATCAATACCT 660
|||||| ||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 597 --GCCGTCACCGGAGAGTTCTCCTCTGCCGGTTCTGCAATTGCTCCGATCATCAATACCT 654
Query 661 TTGCGACGGAGCACGTGTCCTGTTTCTCCAATAACTCTGCTGCTCATACCGATGCGAGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTGCGACGGAGCACGTGTCCTGTTTCTCCAATAACTCTGCTGCTCATACCGATGCGAGCT 714
Query 721 TCCATACATACCTTCCCGCTCCACCACCGTCACT-CCCGCCACGTCAGCCTCGTCACGTC 779
| ||||||| ||||||||||||||| |||||||| ||| ||||||||||| |||||||||
Sbjct 715 TTCATACATTCCTTCCCGCTCCACCGCCGTCACTGCCC-CCACGTCAGCCACGTCACGTC 773
Query 780 GGCGATGACGTGGTGTTTGGTCAGTTTCTGGATTTGGGATCATCGGGACAGGTTAATTTC 839
|| |||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 774 GGTGATGGCGTGGCGTTTGGTCAGTTTCTGGATTTGGGATCATCGGGACAGATTGATTTC 833
Query 840 GATGCAGCAGCAGC-G--TTCTTTCCGAATCTACCTTCTCTGCCTCCAACGGTTCTTCCT 896
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 834 GATGCAGCAGCAGCAGCGTTCTTTCCGAATCTACCTTCTCTGCCTCCCACGGTTCTTCCT 893
Query 897 CCTCCTCCGTCATTTGCAATGTTCGGTGGAGGCTCC---GCCGTGAGTGTCTGGCCGTTT 953
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 894 CCTCCTCCGTCATTTGCAATGTACGGTGGAGGCTCCCCCGCCGTGAGTGTGTGGCCGTTT 953
Query 954 GCTCTCTGATCGTCATGCGG 973
||||||||||| |||||||
Sbjct 954 ACTCTCTGATCGCCATGCGG 973
> AT4G17980.1 | Symbols: anac071, NAC071 | NAC domain containing
protein 71 | chr4:9978850-9980038 REVERSE LENGTH=789
Length=789
Score = 58.4 bits (31), Expect = 1e-07
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 88 TGCCACCTGGGTTTAGATTTCATCCAACTGATGAAGAGCT 127
|||| || || |||||||||||||||||||||||||||||
Sbjct 17 TGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCT 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5