BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478950 Length=1761 Score E Sequences producing significant alignments: (Bits) Value AT3G15180.2 | Symbols: | ARM repeat superfamily protein | chr3... 1454 0.0 > AT3G15180.2 | Symbols: | ARM repeat superfamily protein | chr3:5111893-5116007 FORWARD LENGTH=1919 Length=1919 Score = 1454 bits (787), Expect = 0.0 Identities = 883/929 (95%), Gaps = 8/929 (1%) Strand=Plus/Plus Query 1 ATTCAGCTTGCTCGCAACGAAACATATTTTACTGG---aaaaaaaC---GGAAATCGCCA 54 |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| Sbjct 1 ATTCAGCTTGCTCGCAACGAAACATATTTTGTTGGAAAAAAAAAACAAAGGAAATCGCCA 60 Query 55 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 120 Query 115 AAAACGAAGCCTCGGTCAAGGAATTTCTCGATCGCTTCCCTCTTCCCGTTATCTTCAATG 174 |||||||| | || || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 121 AAAACGAAACTTCCGTTAAGGAATTCCTCGATCGCTTCCCTCTTCCTGTTATCTTCAATG 180 Query 175 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTAGAGA 234 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 181 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTGGAGA 240 Query 235 GGCTGTTTAAGACTAAGTATGGTGCCTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 294 || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 241 GGTTGTTTAAGACTAAGTATGGCGCTTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 300 Query 295 TTGGTCTCAAGGCAGATTCTGCAATAGTTAAATCTCTGGCTTGCAAAACTGTCCTTTGTC 354 ||||||||||||||||||||||| | || ||||||||||||||||||||||| || |||| Sbjct 301 TTGGTCTCAAGGCAGATTCTGCAGTTGTGAAATCTCTGGCTTGCAAAACTGTTCTGTGTC 360 Query 355 TCTTGGAGGATTGCGATACAAACGATGTTTCTCCTGTTCAGCTAGTTGTTAGCAATGGCA 414 ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| Sbjct 361 TCTTGGAGGATTGCGATACAAACGACGTTTCTTCTGTTCAGCTAGTTGTTAACAATGGCA 420 Query 415 TATACCCTCTTCTGCTTGATTATATCATTAACAGCGATGATGAAGTGGCACATGCTGCAA 474 ||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||| Sbjct 421 TATACCCTCTTCTACTTGACTATATCATTAACAGCGATGATGAAGTTGCAAATGCTGCAA 480 Query 475 GTGAGACAATTAAGAGTCTAGCACGCTTCCCTA-ATGCAATGTCTGTAATTTTCCCTTCT 533 |||||||||||||||| ||||| ||||| || | |||||||||| ||||||||||||||| Sbjct 481 GTGAGACAATTAAGAGCCTAGCTCGCTTTCC-AGATGCAATGTCCGTAATTTTCCCTTCT 539 Query 534 GAAACCAACGATGCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCGTCACTGGCACGA 593 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 540 GAAACCAACGATCCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCATCACTGGCACGA 599 Query 594 GTCCGGGTTTTGTCTTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 653 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GTCCGGGTTTTGTCGTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 659 Query 654 ATTAAGAAATCAGGGCTTCTTGATTTGCTGGAGGCAGAAATGAAGGGTACAAAAGACACT 713 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 660 GTTAAGAAATCGGGGCTTCTTGATTTACTGGAGGCAGAAATGAAGGGTACAAAAGACACT 719 Query 714 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 779 Query 774 GAGTTCGTGCCACAAACTTCTCTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 833 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 780 GAGTTCGTGCCACAAACATCACTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 839 Query 834 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATTAGTGGCAGGCTACTCTCAAAGGAA 893 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 840 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATAAGTGGCAGACTACTCTCAAAGGAA 899 Query 894 AATATCTACAAAGTCGTGGAAGAAGCTAG 922 ||||||||||||||||||||||||||||| Sbjct 900 AATATCTACAAAGTCGTGGAAGAAGCTAG 928 Score = 1373 bits (743), Expect = 0.0 Identities = 813/846 (96%), Gaps = 8/846 (1%) Strand=Plus/Plus Query 922 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCGGTGGAGATGAATGATA 981 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1024 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCAGTTGAGATGAATGATA 1083 Query 982 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATTGGATCAACAACGAAGGGAG 1041 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1084 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATGGGATCAACAACGAAGGGAG 1143 Query 1042 CGGATATGGTGCTTTCAACTTCACTTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1101 ||||| | || ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1144 CGGATCTTGTCCTTTCAACTTCACCTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1203 Query 1102 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1204 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1263 Query 1162 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1264 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1323 Query 1222 TGATATACGATGTTGCAGCACAGAGCACAAAACTAACCCCATCTGGTTTATTCCTCTCAG 1281 |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1324 TGATATACGACGCTGCAGCACAGAGCACAAAACTAACCCCATCCGGTTTATTCCTCTCAG 1383 Query 1282 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATAGAACGTTAACAGCATTGGTGG 1341 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1384 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATCGAACGTTAACAGCATTAGTGG 1443 Query 1342 CACGGCCATGGTGCCTGGTGGAAATCTTGTCCAAAGAAGAGATAATAAACATAGTTACGG 1401 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1444 CTCGGCCATGGTGCCTGGTGGAAATCTTGGCCAAAGAAGAGATAATAAACATAGTTACGG 1503 Query 1402 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1563 Query 1462 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTaaaaaaaCCGGTG 1521 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1564 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTCTAAAAACCGGTG 1623 Query 1522 AAAAGTTGCAAGAAGCTGTTCGAAGTGGACCATACATGTCGAAGAAGCACAGAGGTGCAC 1581 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1624 ACAAGTTGCAAGAAGCTGTTCGAAGTGGACCATATATGTCGAAGAAGCACAGAGGCGCAC 1683 Query 1582 GACCAGAAGTAATGACTGGCGAAGGATTTTAAAGACATAACTAAAGAAAAAA-GTTTAAA 1640 |||||||||||||||| |||||||||||||||||||| | |||||||||||| ||| ||| Sbjct 1684 GACCAGAAGTAATGACAGGCGAAGGATTTTAAAGACA-A-CTAAAGAAAAAAAGTTAAAA 1741 Query 1641 CTTCTTTGTTAACCAAAGttttttttATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1700 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1742 CTTCTTTGTTAACCAAAGTTTTTTATATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1801 Query 1701 TCTTTCTA-AA-CGA-G--GGCTAGGACTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1755 |||||||| || | | | |||||||| |||||||||||||||||||||||||||||||| Sbjct 1802 TCTTTCTATAAACAACGAAGGCTAGGAGTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1861 Query 1756 TACTTT 1761 || ||| Sbjct 1862 TAATTT 1867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87097945575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5