BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478950
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15180.2 | Symbols: | ARM repeat superfamily protein | chr3... 1454 0.0
> AT3G15180.2 | Symbols: | ARM repeat superfamily protein | chr3:5111893-5116007
FORWARD LENGTH=1919
Length=1919
Score = 1454 bits (787), Expect = 0.0
Identities = 883/929 (95%), Gaps = 8/929 (1%)
Strand=Plus/Plus
Query 1 ATTCAGCTTGCTCGCAACGAAACATATTTTACTGG---aaaaaaaC---GGAAATCGCCA 54
|||||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 1 ATTCAGCTTGCTCGCAACGAAACATATTTTGTTGGAAAAAAAAAACAAAGGAAATCGCCA 60
Query 55 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 120
Query 115 AAAACGAAGCCTCGGTCAAGGAATTTCTCGATCGCTTCCCTCTTCCCGTTATCTTCAATG 174
|||||||| | || || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 121 AAAACGAAACTTCCGTTAAGGAATTCCTCGATCGCTTCCCTCTTCCTGTTATCTTCAATG 180
Query 175 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTAGAGA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTGGAGA 240
Query 235 GGCTGTTTAAGACTAAGTATGGTGCCTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 294
|| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTGTTTAAGACTAAGTATGGCGCTTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 300
Query 295 TTGGTCTCAAGGCAGATTCTGCAATAGTTAAATCTCTGGCTTGCAAAACTGTCCTTTGTC 354
||||||||||||||||||||||| | || ||||||||||||||||||||||| || ||||
Sbjct 301 TTGGTCTCAAGGCAGATTCTGCAGTTGTGAAATCTCTGGCTTGCAAAACTGTTCTGTGTC 360
Query 355 TCTTGGAGGATTGCGATACAAACGATGTTTCTCCTGTTCAGCTAGTTGTTAGCAATGGCA 414
||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||
Sbjct 361 TCTTGGAGGATTGCGATACAAACGACGTTTCTTCTGTTCAGCTAGTTGTTAACAATGGCA 420
Query 415 TATACCCTCTTCTGCTTGATTATATCATTAACAGCGATGATGAAGTGGCACATGCTGCAA 474
||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 421 TATACCCTCTTCTACTTGACTATATCATTAACAGCGATGATGAAGTTGCAAATGCTGCAA 480
Query 475 GTGAGACAATTAAGAGTCTAGCACGCTTCCCTA-ATGCAATGTCTGTAATTTTCCCTTCT 533
|||||||||||||||| ||||| ||||| || | |||||||||| |||||||||||||||
Sbjct 481 GTGAGACAATTAAGAGCCTAGCTCGCTTTCC-AGATGCAATGTCCGTAATTTTCCCTTCT 539
Query 534 GAAACCAACGATGCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCGTCACTGGCACGA 593
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GAAACCAACGATCCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCATCACTGGCACGA 599
Query 594 GTCCGGGTTTTGTCTTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 653
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTCCGGGTTTTGTCGTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 659
Query 654 ATTAAGAAATCAGGGCTTCTTGATTTGCTGGAGGCAGAAATGAAGGGTACAAAAGACACT 713
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 GTTAAGAAATCGGGGCTTCTTGATTTACTGGAGGCAGAAATGAAGGGTACAAAAGACACT 719
Query 714 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 779
Query 774 GAGTTCGTGCCACAAACTTCTCTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 833
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGTTCGTGCCACAAACATCACTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 839
Query 834 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATTAGTGGCAGGCTACTCTCAAAGGAA 893
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 840 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATAAGTGGCAGACTACTCTCAAAGGAA 899
Query 894 AATATCTACAAAGTCGTGGAAGAAGCTAG 922
|||||||||||||||||||||||||||||
Sbjct 900 AATATCTACAAAGTCGTGGAAGAAGCTAG 928
Score = 1373 bits (743), Expect = 0.0
Identities = 813/846 (96%), Gaps = 8/846 (1%)
Strand=Plus/Plus
Query 922 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCGGTGGAGATGAATGATA 981
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1024 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCAGTTGAGATGAATGATA 1083
Query 982 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATTGGATCAACAACGAAGGGAG 1041
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1084 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATGGGATCAACAACGAAGGGAG 1143
Query 1042 CGGATATGGTGCTTTCAACTTCACTTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1101
||||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1144 CGGATCTTGTCCTTTCAACTTCACCTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1203
Query 1102 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1263
Query 1162 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1323
Query 1222 TGATATACGATGTTGCAGCACAGAGCACAAAACTAACCCCATCTGGTTTATTCCTCTCAG 1281
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1324 TGATATACGACGCTGCAGCACAGAGCACAAAACTAACCCCATCCGGTTTATTCCTCTCAG 1383
Query 1282 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATAGAACGTTAACAGCATTGGTGG 1341
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1384 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATCGAACGTTAACAGCATTAGTGG 1443
Query 1342 CACGGCCATGGTGCCTGGTGGAAATCTTGTCCAAAGAAGAGATAATAAACATAGTTACGG 1401
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1444 CTCGGCCATGGTGCCTGGTGGAAATCTTGGCCAAAGAAGAGATAATAAACATAGTTACGG 1503
Query 1402 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1563
Query 1462 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTaaaaaaaCCGGTG 1521
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1564 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTCTAAAAACCGGTG 1623
Query 1522 AAAAGTTGCAAGAAGCTGTTCGAAGTGGACCATACATGTCGAAGAAGCACAGAGGTGCAC 1581
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1624 ACAAGTTGCAAGAAGCTGTTCGAAGTGGACCATATATGTCGAAGAAGCACAGAGGCGCAC 1683
Query 1582 GACCAGAAGTAATGACTGGCGAAGGATTTTAAAGACATAACTAAAGAAAAAA-GTTTAAA 1640
|||||||||||||||| |||||||||||||||||||| | |||||||||||| ||| |||
Sbjct 1684 GACCAGAAGTAATGACAGGCGAAGGATTTTAAAGACA-A-CTAAAGAAAAAAAGTTAAAA 1741
Query 1641 CTTCTTTGTTAACCAAAGttttttttATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1700
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1742 CTTCTTTGTTAACCAAAGTTTTTTATATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1801
Query 1701 TCTTTCTA-AA-CGA-G--GGCTAGGACTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1755
|||||||| || | | | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1802 TCTTTCTATAAACAACGAAGGCTAGGAGTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1861
Query 1756 TACTTT 1761
|| |||
Sbjct 1862 TAATTT 1867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5