BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478955
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15240.2 | Symbols: | Serine/threonine-protein kinase WNK (... 1912 0.0
> AT3G15240.2 | Symbols: | Serine/threonine-protein kinase WNK
(With No Lysine)-related | chr3:5133606-5135902 FORWARD LENGTH=1269
Length=1269
Score = 1912 bits (1035), Expect = 0.0
Identities = 1188/1256 (95%), Gaps = 33/1256 (3%)
Strand=Plus/Plus
Query 1 AAAACTAGAAGAGAAACACATATAACACACATATATACCGACATATTTATATAGATGGTG 60
||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 28 AAAACTAGAGGAGAAACCCATATAACACAC------ACCGACATATTCATATAGATGGTG 81
Query 61 GGCTCGGAAcatcat---catcat------catcatcatcaAAACCATCAGCAGCAGCAA 111
||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 82 GGCTCGGAACATCATCACCATCATCAACAACATCATCATCAAAACCATCAGCAGCAGCAA 141
Query 112 CAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGAGGCCCTAAGAACCGTTTGT 171
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 142 CAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGT 201
Query 172 CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGA 261
Query 232 GGCGGTGGCAACGGCTGCAAAGTGGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAA 291
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 262 GGCGGTGGCAACGGCTGCAAAGTTGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAA 321
Query 292 GATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAA 381
Query 352 GATCCTGTTCGTAAATCTTTCAGCAAGATGTCAATTCAGTTATATAATTATGGCGAAGGG 411
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 382 GATCCTGTTCGTAAATCTTTCAGCAAGATGTCTATTCAGTTATATAATTATGGCGAAGGG 441
Query 412 TTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAA 501
Query 472 TCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCGGAGTGG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 502 TCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCAGAGTGG 561
Query 532 AATGATCAATTCGAATCTGGGATTCAGACCATAGCTGTTATTCAAGCCGGACATGGCCTT 591
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 562 AATGATCAGTTCGAATCTGGGATTCGGACCATAGCTGTTATTCAAGCCGGACATGGCCTT 621
Query 592 TTACAACTCGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTACTTCGGATGAGG 651
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 622 TTACAACTTGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTTCTTCGGATGAGG 681
Query 652 CACACGTTTGAATCACTCGGCTACCAATCCGGCTTTTACCTCTCTCAGCTATTCTCCTCA 711
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 682 CACACGTTTGAATCACTTGGCTACCAATCCGGATTTTACCTCTCTCAGCTCTTCTCCTCA 741
Query 712 AACCGAACCACTTCGACTTCAAACACATCGCTCATGGGCTCGAACCATCCTATACTTCCT 771
||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| |||| |||
Sbjct 742 AACCGAACCACTTCGTCTTCAAACACACCGCTCATGGCCTCGAACCACCCTCTACTACCT 801
Query 772 CCACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAA 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 ACACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAA 861
Query 832 CGACCAATGATGGTTCAAACCTCTTTGCCTACCTACCAGCCTCACATG-C----C-TTTC 885
|||||||||||| |||||||||||||||||||||||||||||||||| | | ||||
Sbjct 862 CGACCAATGATGCCTCAAACCTCTTTGCCTACCTACCAGCCTCACATGACTATGCCTTTC 921
Query 886 CCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGGCTA 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 922 CCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGCCTA 981
Query 946 TCATTCTTCAATGCGTTGACTAACAATGTCAATGCTAAGCTTCTGTTTGATTCAGAGGGG 1005
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 982 TCTTTCTTCAATGCGTTGACTAACAATGTCAACGCTAAGCTTCTGTTTGATTCAGAGGGG 1041
Query 1006 TTAGGTGACAAAACAGACCACCAAAGCCACCAAAACCAGAGCCAGGAACAGAGCAACTCT 1065
||||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 1042 TTAGGTGACAAAACAGACCACCA--G--A--A---CCAGAGCCAGGAACAGAGCAACTCT 1092
Query 1066 GAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGT 1152
Query 1126 TTCTTGGAGTGATATGACTTCGTGTATGCCTCTCGTAAGAACTTAGTTTGGTCCTTTTTC 1185
||||| ||||||||||||||| ||||| || |||||||||||||||||||||| ||||||
Sbjct 1153 TTCTTAGAGTGATATGACTTCATGTATTCCCCTCGTAAGAACTTAGTTTGGTCTTTTTTC 1212
Query 1186 TATGCCTCTTGTTTGTTGTTTGGATCGTTTTATCA-C--TTGTGTTAAACCTAGTT 1238
|||||||||||||||||||||||||| |||||||| | || ||||||||||||||
Sbjct 1213 TATGCCTCTTGTTTGTTGTTTGGATCATTTTATCATCACTTATGTTAAACCTAGTT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5