BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478956
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1020 0.0
> AT3G15250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53163.1);
Has 409 Blast hits to 218 proteins in 63 species: Archae -
0; Bacteria - 22; Metazoa - 178; Fungi - 77; Plants - 38; Viruses
- 1; Other Eukaryotes - 93 (source: NCBI BLink). | chr3:5136262-5137195
REVERSE LENGTH=934
Length=934
Score = 1020 bits (552), Expect = 0.0
Identities = 689/754 (91%), Gaps = 14/754 (2%)
Strand=Plus/Plus
Query 1 AAATGGAGAATCATAGAGAAACCACAAACTCCGACGAGCCACCACCGGATTTTGAGTTCG 60
|||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 11 AAATGGAGAATCATCGAGTAACAACAAACTCCGACGAGCCACCACCGGAGTTTGAGTTCG 70
Query 61 GATCGTTGACTCCAACTTCTCCGTCGCAAGACTCTTTCACTGAGAATTCTCCCGCCGATC 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 71 GATCGTTGACTCCAACTTCTCCGTCGCAAGACTCTTTCTCAGAGAATTCTCCCGCCGATC 130
Query 121 ACCTCTTCTTCAACGGCCGTCTCTTGCCACACTCTTTCCCAGCGCCGACCAGTATTTATA 180
| ||||| |||||||||||||||||||||||| | ||||| ||| ||| |||||||||||
Sbjct 131 ATCTCTTTTTCAACGGCCGTCTCTTGCCACACGCATTCCCGGCGGCGAGCAGTATTTATA 190
Query 181 CAAAGCGGTCAATCTCGAGTACGACCAGCGAATACACCTCCCGGAGCAGTAGTACGAACA 240
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 191 CAAAGCGGTCAATCTCGAGTACGACCAGCGAATACACCTCCCGGTGCAATAGTACGAACA 250
Query 241 GCCGAAGTAGTTTTGGGAGTAATAGCAGCTCAACTTCTCAATCTCCGAGAACGAGC-AGT 299
|| | ||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |
Sbjct 251 GCAGCAGTAGTTTTGGTAGTAACAACAGCTCAACTTCTCAATCTCCGAGAACGAGCTA-T 309
Query 300 TGCAA-CATTAACAAGAACAACAGCCCCAATAATCAAGAGCCACTGGA--T----TTGAA 352
| ||| || |||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 310 T-CAACCAGTAACAAGAACAACAGCCCCATTAATCAAGAGCCACTGGATTTGAAGTTGAA 368
Query 353 GCCTCCAATTAGCAGATGTGGCAAAACCGTAAATACGACCAACAACAGCTCGTACTCGTC 412
|||||||||||||||||||| ||||||||||||||||| | || ||||| ||||||||
Sbjct 369 GCCTCCAATTAGCAGATGTGACAAAACCGTAAATACGATGAGCAGTAGCTCCTACTCGTC 428
Query 413 GCCGCAATACAAGAGGAGGAAAGCGACGGAGATGGTGACAGCGTCTCTATACAGGTCTTA 472
||| ||| ||||||| ||||| |||| |||||||| |||| ||||||| |||||||| ||
Sbjct 429 GCCACAACACAAGAGAAGGAAGGCGATGGAGATGGCGACAACGTCTCTGTACAGGTCGTA 488
Query 473 TTCATCGCAGCGGTGGCAATATGTAACTCCGGTACCGGTGAAAATGAGTGGAGGGATAAG 532
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 489 TTCATCGCAGCGGTGGCAATATATAACTCCGGTACCGGTGAGAATGAGTGGAGGGATAAG 548
Query 533 GGTCGGTGGCCGGAAGAAGAAGGCGGCGAGGGTGAGGAAGGAGACGGAGGAGAGAAGAGG 592
|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||
Sbjct 549 GGTCGGTGGCCGGAAGAAGAAGGCGGTGAGGGTGAGGAAGAAGACGGAAGAGAGAAG-GG 607
Query 593 -GAGTAGGGTGATGAAGTTGTGGAGAAAACTTTTAATGGCGGCAATTTTTGCTTGTAGAG 651
||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 608 TGAGTAGGGTGATGAAGTTGTGGAGAAAACTTTTGATGGCGGCTATTTTTGTTTGTAGAG 667
Query 652 AGTGTCATGCATTGGAGGGAGCTTGAGTGAGACTTGTGAAATTGTGACGTGGTTATGAT- 710
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 668 AGTGTCATGCATTGGAGGGAGCTTGAGTGAGACTTGTGATTTTGTGACGTGGTTATGATT 727
Query 711 AAGGAAAGTATTGATTATTCAATACTGTAGACTT 744
||| |||||||||||| ||||||| || ||||||
Sbjct 728 AAG-AAAGTATTGATTGTTCAATAGTGAAGACTT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5