BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478960
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 857 0.0
> AT3G15280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: mitochondrion; EXPRESSED
IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage,
4 anthesis, petal differentiation and expansion stage;
Has 36 Blast hits to 36 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5143968-5144693
REVERSE LENGTH=652
Length=652
Score = 857 bits (464), Expect = 0.0
Identities = 585/643 (91%), Gaps = 10/643 (2%)
Strand=Plus/Plus
Query 1 AATCAAGAAAACGAAAAGTAACAATGGCGACTAGGTTTTTGGTGAAGAGACTCACGGAGG 60
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AATCAAGACAACGAAAATTAACAATGGCGACTAGGTTTTTGGTGAAGAGACTCACGGCGG 60
Query 61 TGAATGTTTCAAGAACTCCAGGGGGAGATTTATCCGGTTATGTTTTACGACAAGCTACAA 120
||||||||||||||||||| ||||||||||| |||||||||| | | |||||||||||||
Sbjct 61 TGAATGTTTCAAGAACTCCTGGGGGAGATTTCTCCGGTTATGCTCTCCGACAAGCTACAA 120
Query 121 CCGGTATCAACCGCTTCTCAACCGGATTTAAGCAAACGGAGGGCACTAGTCACGACGATA 180
||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 121 TCGGAATCAACCACTTCTCAACCGGATTTAAGCAAACGGAGGGCTCTACTCATGACGATA 180
Query 181 AGTCCACAACGAATTACGTGGCGGACAAGGCAAAGGAAGGGGTGAAGAAAGCGACAGACG 240
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 181 AGTCCACGACGAGTTACGTGGCAGACAAGGCAAAGGAAGGGGTGAAGAAAGCGACCGACG 240
Query 241 CAGCCGTCAACGCAGGAGATAACGTGAAGGATGCGATGGACGGTGCATGGAAAGCGGCTA 300
||||||||| | | || |||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 241 CAGCCGTCAGCACGGGTGATAACATGAAGGATGCGATGGATGGTGCGTGGAAAGCGGCTA 300
Query 301 AGGAAACGGGTCAAAACATTAGTGATGCGGTTGCGGGCGATGATGACGACGGCAGGATTC 360
|||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||
Sbjct 301 AGGAAACGGGTCAAAACATTAGCGATGCGGTTACGGGCGATGATGATGACGGCAGAATTC 360
Query 361 AAGAGGATAAGGTCGCTGTGGAGTTGAAGGATGTTCAACAGCCTGTGGATACGACGGAGT 420
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 361 AAGAGGATAAGGTCGCAGTGGAATTGAAGGATGTGCAACAGCCTGTGGATACGACGGAGT 420
Query 421 ATAGAGGCGTGGAGGATCTACATCAGCAAACCGGCGGCGAAGTTAAGTCACCCTAAGCTA 480
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 ATAGAGGTGTGGAGGATCTACATCAGCAAACCGGCGGAGAAGTTAAGTCACCCTAAGCTA 480
Query 481 TTGTGATAGTGTTTCTTTCCTTT-TCTCATTGTTGTTTCAGTGAGAGCTAGGTTGCTTGT 539
|||| ||| || ||| |||||| | ||||||||||||||||||||| | ||||||||
Sbjct 481 ATGTGTTAGGGTGTCTATCCTTTCTTTCATTGTTGTTTCAGTGAGAG---G-TTGCTTGT 536
Query 540 GCCTCGTGGTTCAGA-----GGTTTATGAATGGACCGTAGCTTAGATCGCTTTGCAATTT 594
||||||||||||| | |||||||||||||||||| ||||||||||| || ||||||
Sbjct 537 GCCTCGTGGTTCAAATTAAAGGTTTATGAATGGACCGTGGCTTAGATCGCATTACAATTT 596
Query 595 GTTTTTATTACTAGTTGAACTAAAGCAAAATAAACAACCACTC 637
| |||||||||||||||||||||||||||||||||| ||||
Sbjct 597 ACTCTTATTACTAGTTGAACTAAAGCAAAATAAACAACTACTC 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30743297964
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5